View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_103 (Length: 232)
Name: NF15182_low_103
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_103 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 36233961 - 36234139
Alignment:
| Q |
50 |
acaacatcattatgctccatccaattacaccacgccgttgttaacgaaacagtaatatgtagacaccaataatacttnnnnnnnttaaaagtcattaaat |
149 |
Q |
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| T |
36233961 |
acaacatcattatgctccatccaattacaccatgccgttgttaacgaagcagtaatatgtagacaccgataatacttaaaaaaattaaaagtcattaaat |
36234060 |
T |
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| Q |
150 |
gttgagacacaacatgatcattcataaacatgaaattgcttagaaattgtaattcaagcaagctgaaaaggactcttag |
228 |
Q |
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| T |
36234061 |
gttgagacacaacatgatcattcataaacatgaaattgcttagaaattgtaattcaagcaagctgaaaaggactcttag |
36234139 |
T |
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Target: scaffold0352 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 8583 - 8541
Alignment:
| Q |
52 |
aacatcattatgctccatccaattacaccacgccgttgttaac |
94 |
Q |
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| T |
8583 |
aacatcattatgttccatccaaatacaccaccccgttgttaac |
8541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 27479429 - 27479387
Alignment:
| Q |
52 |
aacatcattatgctccatccaattacaccacgccgttgttaac |
94 |
Q |
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| T |
27479429 |
aacatcattacgctccatctaaatacaccacgccgttgttaac |
27479387 |
T |
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