View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_109 (Length: 221)

Name: NF15182_low_109
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_109
NF15182_low_109
[»] chr3 (17 HSPs)
chr3 (1-109)||(1758174-1758282)
chr3 (125-203)||(1757691-1757769)
chr3 (169-204)||(38890461-38890496)
chr3 (170-205)||(48924339-48924374)
chr3 (24-66)||(1751311-1751353)
chr3 (169-203)||(6901476-6901510)
chr3 (169-203)||(18870747-18870781)
chr3 (167-205)||(24145401-24145439)
chr3 (169-203)||(45431953-45431987)
chr3 (171-204)||(2151067-2151100)
chr3 (170-203)||(36431815-36431848)
chr3 (167-203)||(10308470-10308506)
chr3 (169-205)||(13992676-13992712)
chr3 (167-203)||(19599160-19599196)
chr3 (167-203)||(25441522-25441558)
chr3 (167-203)||(35718584-35718620)
chr3 (167-199)||(49983740-49983772)
[»] chr6 (7 HSPs)
chr6 (167-203)||(6555537-6555573)
chr6 (170-205)||(14918320-14918355)
chr6 (169-203)||(10780129-10780163)
chr6 (169-203)||(17382089-17382123)
chr6 (169-202)||(4891280-4891313)
chr6 (167-203)||(14609984-14610020)
chr6 (169-205)||(26522477-26522513)
[»] scaffold0045 (2 HSPs)
scaffold0045 (170-205)||(63868-63903)
scaffold0045 (170-205)||(71200-71235)
[»] chr2 (19 HSPs)
chr2 (167-205)||(30089052-30089090)
chr2 (167-205)||(30125656-30125694)
chr2 (167-203)||(24592868-24592904)
chr2 (169-203)||(17142835-17142869)
chr2 (169-203)||(20565097-20565131)
chr2 (167-205)||(30045456-30045494)
chr2 (167-205)||(30050619-30050657)
chr2 (167-205)||(30141663-30141701)
chr2 (167-205)||(30243253-30243291)
chr2 (165-203)||(31156814-31156852)
chr2 (169-203)||(34191330-34191364)
chr2 (170-203)||(3197101-3197134)
chr2 (167-203)||(4927471-4927507)
chr2 (169-205)||(7413209-7413245)
chr2 (169-205)||(13922652-13922688)
chr2 (167-203)||(25598584-25598620)
chr2 (169-205)||(34117449-34117485)
chr2 (170-205)||(37600103-37600139)
chr2 (167-203)||(37670503-37670539)
[»] chr4 (13 HSPs)
chr4 (167-204)||(25999400-25999437)
chr4 (167-203)||(8494990-8495026)
chr4 (167-205)||(10082405-10082443)
chr4 (169-203)||(20799416-20799450)
chr4 (169-203)||(50362161-50362195)
chr4 (170-203)||(897431-897464)
chr4 (170-203)||(2649755-2649788)
chr4 (174-203)||(48067143-48067172)
chr4 (167-203)||(10069110-10069146)
chr4 (167-203)||(21623441-21623477)
chr4 (171-203)||(23160047-23160079)
chr4 (167-199)||(26610186-26610218)
chr4 (167-203)||(45837141-45837177)
[»] chr8 (12 HSPs)
chr8 (170-202)||(4600301-4600333)
chr8 (167-203)||(36588116-36588152)
chr8 (170-205)||(14303171-14303206)
chr8 (167-205)||(1244725-1244763)
chr8 (169-203)||(11708991-11709025)
chr8 (169-203)||(39821889-39821923)
chr8 (169-203)||(42200684-42200718)
chr8 (169-205)||(5032934-5032970)
chr8 (171-203)||(9070965-9070997)
chr8 (171-203)||(29908018-29908050)
chr8 (167-203)||(31888029-31888065)
chr8 (169-205)||(33445575-33445611)
[»] chr5 (19 HSPs)
chr5 (169-205)||(1082239-1082275)
chr5 (169-205)||(20175730-20175766)
chr5 (169-203)||(5485191-5485225)
chr5 (169-203)||(6489012-6489046)
chr5 (169-203)||(8902798-8902832)
chr5 (169-203)||(15889416-15889450)
chr5 (169-203)||(16701603-16701637)
chr5 (167-205)||(32020366-32020404)
chr5 (169-203)||(34436856-34436890)
chr5 (170-204)||(37054290-37054324)
chr5 (170-203)||(17861985-17862018)
chr5 (158-203)||(33014266-33014311)
chr5 (167-203)||(5846032-5846068)
chr5 (167-203)||(11844460-11844496)
chr5 (167-203)||(16188827-16188863)
chr5 (167-203)||(16188929-16188965)
chr5 (169-205)||(20370150-20370186)
chr5 (167-203)||(33952802-33952838)
chr5 (167-203)||(41417766-41417802)
[»] scaffold0117 (1 HSPs)
scaffold0117 (169-203)||(18298-18332)
[»] scaffold0040 (1 HSPs)
scaffold0040 (169-203)||(56789-56823)
[»] chr7 (13 HSPs)
chr7 (169-203)||(30296338-30296372)
chr7 (169-203)||(41029277-41029311)
chr7 (170-203)||(4346667-4346700)
chr7 (167-200)||(43579078-43579111)
chr7 (167-203)||(3830071-3830107)
chr7 (167-203)||(7872770-7872806)
chr7 (167-203)||(23172403-23172439)
chr7 (169-205)||(32263012-32263048)
chr7 (167-203)||(34891795-34891831)
chr7 (167-203)||(40518917-40518953)
chr7 (169-205)||(42753447-42753483)
chr7 (167-203)||(43346586-43346622)
chr7 (169-205)||(48980492-48980528)
[»] chr1 (11 HSPs)
chr1 (169-203)||(17139539-17139573)
chr1 (169-203)||(21400045-21400079)
chr1 (167-205)||(32030925-32030963)
chr1 (169-203)||(37098503-37098537)
chr1 (167-205)||(41513640-41513678)
chr1 (158-203)||(3509963-3510008)
chr1 (174-203)||(14768816-14768845)
chr1 (167-203)||(17201228-17201264)
chr1 (167-203)||(26803473-26803509)
chr1 (171-203)||(51503686-51503718)
chr1 (167-207)||(52202315-52202355)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 1758282 - 1758174
Alignment:
Q  1 gctgataatgggggaggagcaggtattgtagccaaccgtgactcagcttctggttgggaaacattcccggtaagtaacatattactctcatttcagttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1758282 gctgataatgggggaggagcaggtattgtagccaaccgtgactcagcttctggttgggaaacattcccggtaagtaacatattactctcatttcagttgt 1758183  T
Q  101 ttgtcatag 109  Q
    |||||||||    
T  1758182 ttgtcatag 1758174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 1757769 - 1757691
Alignment:
Q  125 ctattttttatatataacaaacagaccttacttgttctctttaacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||| |||| ||  ||| ||| | | |||| ||||||||||||| |||||| |||||||||    
T  1757769 ctattttttatatataacaaacggaccctaagtgtcctcgtgagcttaactcagttggtaggaacaatgcataatatat 1757691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 38890496 - 38890461
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatata 204  Q
    ||||||||||||||||| ||||||||||||||||||    
T  38890496 cttagctcagttggtagtgacaatgtataatatata 38890461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 48924374 - 48924339
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||| |||||||||||||||||||||||||||||    
T  48924374 ttagcttagttggtagggacaatgtataatatatac 48924339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 1751353 - 1751311
Alignment:
Q  24 tattgtagccaaccgtgactcagcttctggttgggaaacattc 66  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  1751353 tattgtagccaaccgtggttcaccttctggttgggaaacattc 1751311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 6901510 - 6901476
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| ||||||||||||||||    
T  6901510 cttagctcagttggtaggaacaatgtataatatat 6901476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 18870781 - 18870747
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  18870781 cttagctcagttggtagggacaatgcataatatat 18870747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 24145401 - 24145439
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  24145401 aacttaactcagttggtagggacaatgcataatatatac 24145439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 45431953 - 45431987
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  45431953 cttagctcagttggtagggacaatgcataatatat 45431987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 2151067 - 2151100
Alignment:
Q  171 tagctcagttggtagggacaatgtataatatata 204  Q
    ||||||||||||||||||||||| ||||||||||    
T  2151067 tagctcagttggtagggacaatgcataatatata 2151100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 36431815 - 36431848
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||| ||||||||||||||    
T  36431815 ttagctcagttggtagggataatgtataatatat 36431848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 10308470 - 10308506
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  10308470 aacttagctcaattggtagggacaatgcataatatat 10308506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 13992676 - 13992712
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||| |||||||| |||||||||||    
T  13992676 cttagctcagttggtaaggacaatgcataatatatac 13992712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 19599196 - 19599160
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  19599196 aacttagctcagttggtaaggacaatatataatatat 19599160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 25441558 - 25441522
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  25441558 aacttagctcagttggtatggacaatgcataatatat 25441522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 35718620 - 35718584
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| || |||||||||    
T  35718620 aacttagctcagttggtagggacattgcataatatat 35718584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 49983772 - 49983740
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataat 199  Q
    |||||||||||||||||||||||| ||||||||    
T  49983772 aacttagctcagttggtagggacattgtataat 49983740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 6555573 - 6555537
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||||||||||||||||    
T  6555573 aacttagctcagttggtagggacaatgtataatatat 6555537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 14918355 - 14918320
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||||||||| |||||||||||    
T  14918355 ttagctcagttggtagggacaatgcataatatatac 14918320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 10780163 - 10780129
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  10780163 cttagctcagttggtagggacaatgcataatatat 10780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 17382089 - 17382123
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  17382089 cttagctcagttggtatggacaatgtataatatat 17382123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 4891313 - 4891280
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatata 202  Q
    ||||| ||||||||||||||||||||||||||||    
T  4891313 cttagatcagttggtagggacaatgtataatata 4891280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 14609984 - 14610020
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  14609984 aacttagctcagttgatagggacaatctataatatat 14610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 26522477 - 26522513
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||| |||||||| |||||||||||    
T  26522477 cttagctcagttggtaaggacaatgcataatatatac 26522513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 63868 - 63903
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  63868 ttagctcagttggtagggacaatgtataatatatac 63903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 71200 - 71235
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||||||||||||||||||||    
T  71200 ttagctcagttggtagggacaatgtataatatatac 71235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30089052 - 30089090
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30089052 aacttagctcagttggtagggacaatgcataatatatac 30089090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30125656 - 30125694
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30125656 aacttagctcagttggtagggacaatgcataatatatac 30125694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 24592904 - 24592868
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||||| |||||||||    
T  24592904 aacttagctcagttggtagggacaatgcataatatat 24592868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 17142835 - 17142869
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||| |||||||||||||||||    
T  17142835 cttagctcagttggtagtgacaatgtataatatat 17142869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 20565131 - 20565097
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  20565131 cttagctcagttggtagggacaatgcataatatat 20565097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30045456 - 30045494
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  30045456 aacttagctcaattggtagggacaatgcataatatatac 30045494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30050619 - 30050657
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  30050619 aacttagctcaattggtagggacaatgcataatatatac 30050657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30141663 - 30141701
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  30141663 aacttagctcaattggtagggacaatgcataatatatac 30141701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 30243253 - 30243291
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  30243253 aacttagctcagttggtagagacaatgcataatatatac 30243291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 31156814 - 31156852
Alignment:
Q  165 ttaacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| |||| |||||||||    
T  31156814 ttaacttagctcagttggtagggataatgcataatatat 31156852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 34191364 - 34191330
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  34191364 cttagctcagttggtagggacaatgcataatatat 34191330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 3197134 - 3197101
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| |||||||||    
T  3197134 ttagctcagttggtagggacaatgcataatatat 3197101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 4927507 - 4927471
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| | |||||||||    
T  4927507 aacttagctcagttggtagggacaaagcataatatat 4927471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 7413245 - 7413209
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||| |||||||| |||||||||||    
T  7413245 cttagctcagttggtaaggacaatgcataatatatac 7413209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 13922688 - 13922652
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||| |||||||||||||||||||| |||||||||||    
T  13922688 cttaactcagttggtagggacaatgcataatatatac 13922652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 25598620 - 25598584
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  25598620 aacttagctcagttggtatggacaatgcataatatat 25598584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 34117449 - 34117485
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||| |||||||||||||||||||||||||| |||||    
T  34117449 cttaactcagttggtagggacaatgtataatgtatac 34117485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 37600103 - 37600139
Alignment:
Q  170 ttagctcagttggtagggac-aatgtataatatatac 205  Q
    |||||||||||||||||||| ||||||||||||||||    
T  37600103 ttagctcagttggtagggacaaatgtataatatatac 37600139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 37670539 - 37670503
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| | ||||||||||||||||    
T  37670539 aacttagctcagttggtaagaacaatgtataatatat 37670503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 25999400 - 25999437
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatata 204  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  25999400 aacttagctcagttggtagggacaatgcataatatata 25999437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 8494990 - 8495026
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||||| |||||||||    
T  8494990 aacttagctcagttggtagggacaatgcataatatat 8495026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 10082405 - 10082443
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  10082405 aacttagctcagttggtagggacaatacataatatatac 10082443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 20799450 - 20799416
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  20799450 cttagctcagttggtagggacaatgcataatatat 20799416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 50362195 - 50362161
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  50362195 cttagctcagttggtagggacaatgcataatatat 50362161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 897431 - 897464
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||| ||||||||||||||||||    
T  897431 ttagctcagttggtatggacaatgtataatatat 897464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 2649788 - 2649755
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| |||||||||    
T  2649788 ttagctcagttggtagggacaatgcataatatat 2649755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 48067143 - 48067172
Alignment:
Q  174 ctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||||||||    
T  48067143 ctcagttggtagggacaatgtataatatat 48067172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 10069146 - 10069110
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| | ||||||||||||||||    
T  10069146 aacttagctcagttggtatgaacaatgtataatatat 10069110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 21623477 - 21623441
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  21623477 aacttagttcagttggtagggacaatgcataatatat 21623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 23160047 - 23160079
Alignment:
Q  171 tagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||| |||||||||    
T  23160047 tagctcagttggtagggacaatgcataatatat 23160079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 26610186 - 26610218
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataat 199  Q
    |||||| ||||||||||||||||||||||||||    
T  26610186 aacttaactcagttggtagggacaatgtataat 26610218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 45837177 - 45837141
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  45837177 aacttagctcagttggtatggacaatgcataatatat 45837141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 202
Target Start/End: Complemental strand, 4600333 - 4600301
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatata 202  Q
    |||||||||||||||||||||||||||||||||    
T  4600333 ttagctcagttggtagggacaatgtataatata 4600301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 36588152 - 36588116
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||| ||||||||||||||||    
T  36588152 aacttagctcagttggtaggaacaatgtataatatat 36588116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 205
Target Start/End: Original strand, 14303171 - 14303206
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||| ||||||||||||||||||||    
T  14303171 ttagctcagttggtatggacaatgtataatatatac 14303206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 1244763 - 1244725
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  1244763 aacttagctcagttggtaaggacaatgcataatatatac 1244725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 11708991 - 11709025
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  11708991 cttagctcagttggtagggacaatgcataatatat 11709025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 39821889 - 39821923
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  39821889 cttagctcagttggtagggacaatgcataatatat 39821923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 42200718 - 42200684
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||| |||||||||||||||||||||    
T  42200718 cttagctcagttgatagggacaatgtataatatat 42200684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 5032970 - 5032934
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||| |||||||||| |||||||||||||||||||||    
T  5032970 cttaactcagttggttgggacaatgtataatatatac 5032934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 9070965 - 9070997
Alignment:
Q  171 tagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||| ||||||||||||||||||    
T  9070965 tagctcagttggtaaggacaatgtataatatat 9070997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 29908018 - 29908050
Alignment:
Q  171 tagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||| |||||||||    
T  29908018 tagctcagttggtagggacaatgcataatatat 29908050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 31888029 - 31888065
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  31888029 aacttagctcagttggtaaggacaatggataatatat 31888065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 33445575 - 33445611
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33445575 cttagctcagttggtaggaacaatgcataatatatac 33445611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 1082275 - 1082239
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||| |||||||||||||||||||||||||||||||    
T  1082275 cttagttcagttggtagggacaatgtataatatatac 1082239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 20175730 - 20175766
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||| ||||||||||||||||||||    
T  20175730 cttagctcagttggtatggacaatgtataatatatac 20175766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 5485191 - 5485225
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  5485191 cttagctcagttggtagggacaatgcataatatat 5485225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 6489012 - 6489046
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  6489012 cttagctcagttggtagggacaatgcataatatat 6489046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 8902832 - 8902798
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  8902832 cttagctcagttggtatggacaatgtataatatat 8902798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 15889416 - 15889450
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  15889416 cttagctcagttggtagggacaatgcataatatat 15889450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 16701637 - 16701603
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  16701637 cttagctcagttggtagggacaatgaataatatat 16701603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 32020404 - 32020366
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  32020404 aacttagctcagttggtatggacaatgtatgatatatac 32020366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 34436856 - 34436890
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  34436856 cttagctcagttggtagggacaatgcataatatat 34436890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 37054324 - 37054290
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatata 204  Q
    |||||||||||||||||||||||| ||||||||||    
T  37054324 ttagctcagttggtagggacaatgcataatatata 37054290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 17861985 - 17862018
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| |||||||||    
T  17861985 ttagctcagttggtagggacaatgcataatatat 17862018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 33014311 - 33014266
Alignment:
Q  158 gttctctttaacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||| |||||||||||||||||  |||||||| |||||||||    
T  33014311 gttctcttgaacttagctcagttggtgtggacaatgcataatatat 33014266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 5846032 - 5846068
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  5846032 aacttagctcagttggtaaggacaatgcataatatat 5846068  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 11844496 - 11844460
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  11844496 aacttagctcagttggtaaggacaatgcataatatat 11844460  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 16188827 - 16188863
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  16188827 aacttagctcagttggtatggacaatgcataatatat 16188863  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 16188929 - 16188965
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  16188929 aacttagctcagttggtatggacaatgcataatatat 16188965  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 20370186 - 20370150
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||||| |||| |||||||||||    
T  20370186 cttagctcagttggtagggataatgcataatatatac 20370150  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 33952838 - 33952802
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||| |||| |||||||||    
T  33952838 aacttagctcagttggtagggataatgaataatatat 33952802  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 41417766 - 41417802
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  41417766 aacttagttcagttggtagggataatgtataatatat 41417802  T

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Target: scaffold0117 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 18298 - 18332
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  18298 cttagctcagttggtaaggacaatgtataatatat 18332  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 56789 - 56823
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  56789 cttagctcagttggtatggacaatgtataatatat 56823  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 30296338 - 30296372
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  30296338 cttagctcagttggtaaggacaatgtataatatat 30296372  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Original strand, 41029277 - 41029311
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||| ||||||||||||||||||    
T  41029277 cttagctcagttggtaaggacaatgtataatatat 41029311  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 4346667 - 4346700
Alignment:
Q  170 ttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| |||||||||    
T  4346667 ttagctcagttggtagggacaatgcataatatat 4346700  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 43579111 - 43579078
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataata 200  Q
    ||||||||||||||||||||||||||| ||||||    
T  43579111 aacttagctcagttggtagggacaatgcataata 43579078  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 3830071 - 3830107
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||| |||||||||||| |||||||||    
T  3830071 aacttagctcagtttgtagggacaatgcataatatat 3830107  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 7872806 - 7872770
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  7872806 aacttagctcagttggtaaggacaatgcataatatat 7872770  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 23172403 - 23172439
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  23172403 aacttaactcagttggtaggaacaatgtataatatat 23172439  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 32263012 - 32263048
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||||  |||||||||||||||||||    
T  32263012 cttagctcagttggtatagacaatgtataatatatac 32263048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34891831 - 34891795
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  34891831 aacttagctcaattggtatggacaatgtataatatat 34891795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 40518953 - 40518917
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||||||||| || |||||||||    
T  40518953 aacttagctcagttggtagggacattgcataatatat 40518917  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 42753483 - 42753447
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||| |||| |||||||||||||||||||||||||||    
T  42753483 cttaactcaattggtagggacaatgtataatatatac 42753447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 43346622 - 43346586
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  43346622 aacttagctcagttggtatggacaatgcataatatat 43346586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 48980492 - 48980528
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||| |||||||| |||||||||||    
T  48980492 cttagctcagttggtatggacaatgcataatatatac 48980528  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 17139573 - 17139539
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  17139573 cttagctcagttggtagggacaatgcataatatat 17139539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 21400079 - 21400045
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  21400079 cttagctcagttggtagggacaatgcataatatat 21400045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 32030963 - 32030925
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  32030963 aacttagctcagttgttagggacaatgcataatatatac 32030925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 37098537 - 37098503
Alignment:
Q  169 cttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||| |||||||||    
T  37098537 cttagctcagttggtagggacaatgaataatatat 37098503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 41513640 - 41513678
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatac 205  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  41513640 aacttagctcagttggtatggacaatatataatatatac 41513678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 3510008 - 3509963
Alignment:
Q  158 gttctctttaacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||| | |||||||||||||||||| |||||||| |||||||||    
T  3510008 gttctcgtgaacttagctcagttggtatggacaatgcataatatat 3509963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 14768816 - 14768845
Alignment:
Q  174 ctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||||||||    
T  14768816 ctcagttggtagggacaatgtataatatat 14768845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 17201264 - 17201228
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||||||  |||||||||    
T  17201264 aacttagctcagttggtagggacaatacataatatat 17201228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26803509 - 26803473
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatat 203  Q
    |||||||||||||||||| |||||||| |||||||||    
T  26803509 aacttagctcagttggtatggacaatgcataatatat 26803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 51503686 - 51503718
Alignment:
Q  171 tagctcagttggtagggacaatgtataatatat 203  Q
    ||||||||||||||||||||||| |||||||||    
T  51503686 tagctcagttggtagggacaatgcataatatat 51503718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 52202355 - 52202315
Alignment:
Q  167 aacttagctcagttggtagggacaatgtataatatatactg 207  Q
    ||||||||||||||||||| || |||| |||||||||||||    
T  52202355 aacttagctcagttggtagagataatgcataatatatactg 52202315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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