View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_11 (Length: 595)
Name: NF15182_low_11
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 21 - 577
Target Start/End: Original strand, 49256187 - 49256748
Alignment:
| Q |
21 |
tatacaataccagaagcaactggctcagcagcaaggttttgattcacatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaa |
120 |
Q |
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| T |
49256187 |
tatacaataccagaagcaactggctcagcagcaaggttttgattcacatcattcaaaacccattcaatttgtgcatacacatttttctgtacaaataaaa |
49256286 |
T |
|
| Q |
121 |
agtgatgctatttctttgtttgtgtttggtttttcttttcgttgtgttattcagtgcaagagtttcaaatgcattaggagctggatgtccacacgcagca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256287 |
agtgatgctatttctttgtttgtgtttggtttttcttttcgttgtgtcattcagtgcaagagtttcaaatgcattaggagctggatgtccacacgcagca |
49256386 |
T |
|
| Q |
221 |
cgattgtctgtctatgctgctatggctatcgcagtttctgaggctatattggtgagtttcatcattttcgcctctcgacgggtgttaggttatatattta |
320 |
Q |
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| T |
49256387 |
cgattgtctgtctatgctgctatggctatcgcagtttctgaggctatattggtgagttccatcattttcgcctctcgacgggtgttaggttatatattta |
49256486 |
T |
|
| Q |
321 |
gcaatgagcaggatgtggtggattatgtcacagatatggctc-----ataagtctatctgttatagtagatagtttacatggtaccctttcaggttggct |
415 |
Q |
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| T |
49256487 |
gcaatgagcaggatgtggtggattatgtcacagatatggctcctctaataagtctatctgttatagtagatagtttacatggtaccctttcaggttggct |
49256586 |
T |
|
| Q |
416 |
ctttatttctttttactataattcaatgcacaataattcannnnnnncatgaaattcatggtacctgaatgaattatgacatggaatgtaacacttgtct |
515 |
Q |
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| T |
49256587 |
ctttatttcttttttctataattcaatgcacaataattcatttttttcatgaaattcatggtacctgaatgaattatgacatggaatgtaacacctgtct |
49256686 |
T |
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| Q |
516 |
attataggtattgctagaggatgtggttggcagaagttgggagcatatgtgaaccttggagc |
577 |
Q |
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| T |
49256687 |
attataggtattgctagaggatgtggttggcagaaattgggagcatatgtgaaccttggagc |
49256748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 179 - 577
Target Start/End: Original strand, 49269303 - 49269708
Alignment:
| Q |
179 |
agagtttcaaatgcattaggagctggatgtccacacgcagcacgattgtctgtctatgctgctatggctatcgcagtttctgaggctatattggtgagtt |
278 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||| ||||| | | ||||||||||||||||| |||||||||| |
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| T |
49269303 |
agagtttcaaatgcattaggaggtggatgtccacaagcagcgcgattgtctgtctttgcttctatgaccgttgcagtttctgaggctattttggtgagtt |
49269402 |
T |
|
| Q |
279 |
tcatcattttcgcctctcgacgggtgttaggttatatatttagcaatgagcaggatgtggtggattatgtcacagatatgg-----ctcataagtctatc |
373 |
Q |
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| T |
49269403 |
ccaccattttcgcctctcggaaggtgttaggttatatatttagcaatgagcaggatgtggtggactatgtcacacatatggttcctctaataagtataaa |
49269502 |
T |
|
| Q |
374 |
tgttatagtagatagtttacatggtaccctttcaggttggctctttatttctttttactataattcaatgcacaataattcannnnnnncatgaaattca |
473 |
Q |
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||||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||| || |||||||||||| |||| ||| || || |
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| T |
49269503 |
tgttatagtggatagtttacatggcaccctttcaggttgg--ctttttttc--tttact---atccaatgcacaatacttca-tttgttcattaagtttc |
49269594 |
T |
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| Q |
474 |
tggtacctgaatgaattatgacatggaatgtaacacttgtctattat----------aggtattgctagaggatgtggttggcagaagttgggagcatat |
563 |
Q |
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| | | ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
49269595 |
tactgcatgaatgaattatgctatggaatgtaacacttgtccattatatttatatacaggtattgctagaggatctggttggcagaagttgggagcatat |
49269694 |
T |
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| Q |
564 |
gtgaaccttggagc |
577 |
Q |
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|||||||||||||| |
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| T |
49269695 |
gtgaaccttggagc |
49269708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 49269170 - 49269218
Alignment:
| Q |
21 |
tatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49269170 |
tatacaataccagaagcaactggctcagcagcaaggttttgattcacat |
49269218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 550
Target Start/End: Complemental strand, 30379883 - 30379851
Alignment:
| Q |
518 |
tataggtattgctagaggatgtggttggcagaa |
550 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
30379883 |
tataggtattgcaagaggatgtggttggcagaa |
30379851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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