View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_110 (Length: 220)
Name: NF15182_low_110
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_110 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 2484568 - 2484415
Alignment:
| Q |
67 |
tagaaggaattaaaaagggagagaagcaatcaattagaagaatcaaaacagggagaagcaatccaatcaatcagaagaagaaaccaagagggagagatac |
166 |
Q |
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| T |
2484568 |
tagaaggaattaaaaagggggagaaacaatcaattagaagaatcaaaacagggagaagcaatccaatcaatcagaagaagaaatcaagagggagagatac |
2484469 |
T |
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| Q |
167 |
aatcattcaaaagtatgaagaagagaccaacagagagggacaatcaatcagaaa |
220 |
Q |
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| T |
2484468 |
aatcaatcaaaagaatgaagaagagaccaacagagagggacaatcaatgagaaa |
2484415 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 11828384 - 11828434
Alignment:
| Q |
79 |
aaaagggagagaagcaatcaattagaagaatcaaaacagggagaagcaatc |
129 |
Q |
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| T |
11828384 |
aaaagggaaagaagcaatcaattaaaagaatcaaaagggggagaagcaatc |
11828434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 8574462 - 8574429
Alignment:
| Q |
79 |
aaaagggagagaagcaatcaattagaagaatcaa |
112 |
Q |
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| T |
8574462 |
aaaagggagagaagcaatcaattagaagaatcaa |
8574429 |
T |
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