View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_113 (Length: 213)
Name: NF15182_low_113
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_113 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33287270 - 33287061
Alignment:
| Q |
1 |
gtgtaaaacaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtac |
100 |
Q |
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| T |
33287270 |
gtgtaaaacaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaaggttctattgtgattgctgttggccatggtac |
33287171 |
T |
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| Q |
101 |
tacagcgtcgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttggacatgcatttaatgaacatcatgataagaaggtt |
200 |
Q |
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| T |
33287170 |
tacagtgtcgaaaacagtgtccgagtttgacaaatggaaagaagtggcaattaaaaagggctttgaacatgcatttaatgaacatc---ataagaaggtt |
33287074 |
T |
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| Q |
201 |
gctcctttctttc |
213 |
Q |
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| T |
33287073 |
gctccttcctttc |
33287061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 33140837 - 33141000
Alignment:
| Q |
2 |
tgtaaaacaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtact |
101 |
Q |
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| T |
33140837 |
tgtaacacaacaggttgagaaattgctttcttacaagaatgagactgggtgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggact |
33140936 |
T |
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| Q |
102 |
acagcgtcgaaaacagtggtagagtttgacaaatggaaagaagtggcaattaaaaagggctttg |
165 |
Q |
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| T |
33140937 |
tcagttttgaagacagtgtccgagtttgacaaatggaaagatgtggcgatcaataaaggctttg |
33141000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 33159463 - 33159560
Alignment:
| Q |
8 |
acaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacag |
105 |
Q |
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| T |
33159463 |
acaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtcatgggactacag |
33159560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 33182307 - 33182404
Alignment:
| Q |
8 |
acaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaagggtctgttgtgacttatgttggccatggtactacag |
105 |
Q |
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| T |
33182307 |
acaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtcatgggactacag |
33182404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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