View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_117 (Length: 204)
Name: NF15182_low_117
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 5e-61; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 10355946 - 10355780
Alignment:
| Q |
23 |
acacatggcatgttatgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgatttttt-aactgtgacacgttct |
121 |
Q |
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| T |
10355946 |
acacatgacatgttatgattgtatcatttctaaaaaacttaagcgtattacaataacgattgtatttttattggtgatttttttaaccgtgacacgttct |
10355847 |
T |
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| Q |
122 |
tacacgtgccatattttgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10355846 |
tacacgtgccatattttgattgtatcatgatttagaaacttacgtgtattccgccaatcattatatt |
10355780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 10352397 - 10352232
Alignment:
| Q |
23 |
acacatggcatgttatgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgattttttaactgtgacacgttctt |
122 |
Q |
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| T |
10352397 |
acacatggcatgttatgattgtatcattactaagaaacatacgtgtattacattaaagattgtgttttgattggtgattttttaactgtgacacgttctt |
10352298 |
T |
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| Q |
123 |
acacgtgccatattttgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10352297 |
acatgtggcatattttgattgtatgatgatttagaaacttgcgtgtattacaccaatcattatatt |
10352232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 10335589 - 10335424
Alignment:
| Q |
23 |
acacatggcatgttatgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgattttttaactgtgacacgttctt |
122 |
Q |
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| T |
10335589 |
acacatggcatgttttgattgtatcagtgctaagaaacatacgtgtattacagtaaatattgtattttaattgatgattttttaactttgacgcgttctt |
10335490 |
T |
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| Q |
123 |
acacgtgccatattttgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10335489 |
acacgtggcatattttgattgcatcatgatttagaaacttgcgtgtattccgccaacaattatatt |
10335424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 188
Target Start/End: Complemental strand, 10180093 - 10179932
Alignment:
| Q |
27 |
atggcatgttatgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgattttttaactgtgacacgttcttacac |
126 |
Q |
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| T |
10180093 |
atggcatgctatgattgaatcattactaaaaaacttacgtgtattctactaaagattgtattttgatggatgagtttttaatcgtgacagattcttacac |
10179994 |
T |
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| Q |
127 |
gtgccatattttgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10179993 |
gtgacatattataaatgcatcattattttggaaattgtgtgtattcttccaaacattatatt |
10179932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 10352188 - 10352032
Alignment:
| Q |
32 |
atgttatgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgattttttaactgtgacacgttcttacacgtgcc |
131 |
Q |
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| T |
10352188 |
atgttttgattgtatcattaattagaaacttatgtgtattctaccaaatattgtattttgattggtgagtttttaatcgtgatgtgttcctacacatgtg |
10352089 |
T |
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| Q |
132 |
atattttgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10352088 |
atgttttgattgtatcactacttagaaacttgcgtgtattccgccaaacattatatt |
10352032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 10335374 - 10335224
Alignment:
| Q |
38 |
tgattgtattattactaaaaaacttaagtgtattacaataaagattgaattttcattagtgattttttaactgtgacacgttcttacacgtgccatattt |
137 |
Q |
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| T |
10335374 |
tgattgtatcattaattagaaacttacatgtattataccaaaggttgtattttgattggtgagtttctaatcgtgacgtgttcctacacatggcatgttt |
10335275 |
T |
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| Q |
138 |
tgattgtatcatgatttagaaacttgcgtgtattccgccaatcattatatt |
188 |
Q |
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| T |
10335274 |
tgattgtatcattacttacaaacttgcgtgtatttcgccaaacattatatt |
10335224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 10341451 - 10341407
Alignment:
| Q |
27 |
atggcatgttatgattgtattattactaaaaaacttaagtgtatt |
71 |
Q |
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| T |
10341451 |
atggcatgttatgattgtatcattactaaaaaacttacgtgtatt |
10341407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 10352203 - 10352148
Alignment:
| Q |
117 |
gttcttacacgtgccatattttgattgtatcatgatttagaaacttgcgtgtattc |
172 |
Q |
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| T |
10352203 |
gttcttacacgtgctatgttttgattgtatcattaattagaaacttatgtgtattc |
10352148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 10341567 - 10341506
Alignment:
| Q |
111 |
tgacacgttcttacacgtgccatattttgattgtatcatgatttagaaacttgcgtgtattc |
172 |
Q |
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| T |
10341567 |
tgacgcgttcttacacatggcaagttttgattgtatcattactttgaaacttgcgtgtattc |
10341506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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