View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_15 (Length: 571)

Name: NF15182_low_15
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_15
NF15182_low_15
[»] chr3 (17 HSPs)
chr3 (294-571)||(51231143-51231425)
chr3 (2-285)||(53467044-53467341)
chr3 (189-288)||(49308124-49308223)
chr3 (192-280)||(37915410-37915498)
chr3 (231-288)||(49308832-49308889)
chr3 (190-243)||(50704311-50704364)
chr3 (189-280)||(1093175-1093265)
chr3 (236-280)||(50703745-50703789)
chr3 (232-280)||(55336841-55336888)
chr3 (117-190)||(37915513-37915588)
chr3 (249-280)||(51149164-51149195)
chr3 (234-280)||(18387649-18387694)
chr3 (193-255)||(20111861-20111923)
chr3 (156-190)||(50704264-50704298)
chr3 (248-285)||(55337600-55337637)
chr3 (248-288)||(25080810-25080850)
chr3 (189-217)||(26250201-26250229)
[»] chr4 (8 HSPs)
chr4 (1-280)||(51702669-51702962)
chr4 (191-280)||(49648192-49648281)
chr4 (152-286)||(24844081-24844228)
chr4 (193-288)||(33114078-33114176)
chr4 (232-285)||(11380990-11381042)
chr4 (190-279)||(49479909-49479997)
chr4 (158-190)||(33114192-33114224)
chr4 (248-288)||(33352123-33352163)
[»] chr8 (2 HSPs)
chr8 (1-288)||(20104827-20105127)
chr8 (248-288)||(37550955-37550995)
[»] chr2 (8 HSPs)
chr2 (1-189)||(32394765-32394954)
chr2 (191-280)||(42847934-42848023)
chr2 (190-280)||(1677572-1677662)
chr2 (191-280)||(42848613-42848702)
chr2 (191-280)||(45632379-45632467)
chr2 (113-190)||(1678240-1678319)
chr2 (189-243)||(1678331-1678385)
chr2 (189-255)||(30266349-30266415)
[»] chr7 (7 HSPs)
chr7 (113-280)||(32577238-32577419)
chr7 (192-288)||(12293460-12293556)
chr7 (113-284)||(12294138-12294324)
chr7 (117-286)||(9146060-9146244)
chr7 (191-287)||(42745629-42745725)
chr7 (237-280)||(7831635-7831678)
chr7 (189-253)||(32576627-32576690)
[»] scaffold0136 (2 HSPs)
scaffold0136 (193-284)||(23689-23780)
scaffold0136 (158-190)||(23641-23673)
[»] chr5 (7 HSPs)
chr5 (1-110)||(10951692-10951809)
chr5 (189-280)||(41609509-41609600)
chr5 (189-282)||(14098382-14098475)
chr5 (119-279)||(210321-210496)
chr5 (1-110)||(4084280-4084397)
chr5 (232-287)||(29630386-29630440)
chr5 (245-280)||(14098307-14098342)
[»] chr1 (4 HSPs)
chr1 (232-288)||(51097509-51097564)
chr1 (237-285)||(36930179-36930227)
chr1 (248-288)||(36681522-36681562)
chr1 (237-274)||(43250883-43250920)
[»] chr6 (1 HSPs)
chr6 (195-255)||(18970615-18970675)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 294 - 571
Target Start/End: Original strand, 51231143 - 51231425
Alignment:
Q  294 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacc-actcgtaaaacaaacaa 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51231143 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacccactcgtaaaacaaacaa 51231242  T
Q  393 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51231243 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 51231342  T
Q  493 aacattggttctagctagaaataaggtgctttgtaatttggcatgtatgtgag----ttgcttattctgtggggtatctttat 571  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  51231343 aacattggttctagctagaaataaggtgctttgtaatttggcatgtatgtgagttgcttgcttattctgtggggtatctttat 51231425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 53467044 - 53467341
Alignment:
Q  2 tttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaaaa 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53467044 tttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaaga 53467143  T
Q  102 ccacaaaaactagagggaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgcat------------ 188  Q
    ||| | ||| |||||| |||||||||||||||||  |||| || ||||||||||||||||||||| |||||||||| |||||||||||                
T  53467144 ccatacaaattagaggaaaaaatgtagaagcagaaggagatgagggtaggcagagtggagaagataaaaggtagaggttgtagtgcatgaccctttttaa 53467243  T
Q  189 -gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctc 285  Q
     |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  53467244 agagcaattaaatttgaagcgttgattttgatccaatgatccagattaattcctctcatcctctcattataactactcctcccacttgatatgccctc 53467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 49308223 - 49308124
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 288  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308223 gagcaattaaatctgaagcgttgattttgatccaatgatccaaattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 37915498 - 37915410
Alignment:
Q  192 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37915498 caattaaatctgaagcgttgattttgatccaatggtctagattaattcctctcatcctctcattataactactcctctcacttgatatg 37915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 49308832 - 49308889
Alignment:
Q  231 gattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 288  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308832 gattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 50704311 - 50704364
Alignment:
Q  190 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 243  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  50704311 agcaattaaatctgaagcgttgattttgatccaatggtccagattaattcctct 50704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 1093265 - 1093175
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||| | ||||||| ||||||||| ||| ||| | || | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  1093265 gagcaataacatctgaaacgttgatttagatccaacggtctaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 1093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 50703789 - 50703745
Alignment:
Q  236 attcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  50703789 attcctctcatcctctcattttaactactcctctcacttgatatg 50703745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 55336888 - 55336841
Alignment:
Q  232 attaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  55336888 attaaatcctcttatc-tctcattataattactcctctcacttgatatg 55336841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 37915588 - 37915513
Alignment:
Q  117 ggaaaaatgtagaagcagaccgagacgag-gtaggc-agagtggagaagatgaaaggtagagattgtagtgcatga 190  Q
    ||||||||| |||||||||  |||| ||| |||||| | |||||||||||||||||||| || |||||||||||||    
T  37915588 ggaaaaatgcagaagcagaaggagatgagcgtaggcgatagtggagaagatgaaaggtataggttgtagtgcatga 37915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 280
Target Start/End: Original strand, 51149164 - 51149195
Alignment:
Q  249 tctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||||||||||||||    
T  51149164 tctcattataactactcctctcacttgatatg 51149195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 18387694 - 18387649
Alignment:
Q  234 taattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  18387694 taattcctcttatc-tctcattgtaactactcctctcatttgatatg 18387649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 20111861 - 20111923
Alignment:
Q  193 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 255  Q
    |||||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  20111861 aattaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 20111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 50704264 - 50704298
Alignment:
Q  156 tggagaagatgaaaggtagagattgtagtgcatga 190  Q
    ||||||||||||||||||||| |||||||||||||    
T  50704264 tggagaagatgaaaggtagaggttgtagtgcatga 50704298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 55337600 - 55337637
Alignment:
Q  248 ctctcattataactactcctctcacttgatatgtcctc 285  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  55337600 ctctcattataattactcctctcacttgatatgccctc 55337637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 25080850 - 25080810
Alignment:
Q  248 ctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  25080850 ctctcactataacaactcctctcacttgatatgccctctat 25080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 26250229 - 26250201
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttg 217  Q
    |||||||||||||||||||||||||||||    
T  26250229 gagcaattaaatctgaagcgttgattttg 26250201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 51702962 - 51702669
Alignment:
Q  1 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  51702962 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaag 51702863  T
Q  101 accacaaaaactagagggaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgcat----------- 188  Q
    |||||||||| |||||  ||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||| |||||||||||               
T  51702862 accacaaaaattagagaaaaaaatgtagaagcagacgaagatgagggtaggcagagtggagaagatgaaaggtagaggttgtagtgcatgacccttttta 51702763  T
Q  189 --gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  51702762 aagagcaattaaatctgaaacgttgattttgatccaatgatccagattaattcctctcatcctctcatcataactactcctctcacttgatatg 51702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 49648192 - 49648281
Alignment:
Q  191 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  49648192 gcaattaaatctgaagcgttgatttagattaaatggtccaaattaattcctctcaccctctcattataactactcctctcacttgatatg 49648281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 24844228 - 24844081
Alignment:
Q  152 agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccagattaatt 238  Q
    ||||||||||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24844228 agagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaatt 24844129  T
Q  239 cctcttatcctctcattataactactcctctcacttgatatgtcctct 286  Q
     |||| || |||||||| || ||| ||||||||||||||||| |||||    
T  24844128 tctctcattctctcattctagctattcctctcacttgatatgccctct 24844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 193 - 288
Target Start/End: Complemental strand, 33114176 - 33114078
Alignment:
Q  193 aattaaatctgaagcgttgattttgattcaatgatccagatta---attcctcttatcctctcattataactactcctctcacttgatatgtcctctat 288  Q
    ||||||||||||||||||||||||||| ||||| || | ||||   |||| | | ||||||||||||||  ||||||||||||||||||||||||||||    
T  33114176 aattaaatctgaagcgttgattttgatccaatggtctatattattaattcttttcatcctctcattatagttactcctctcacttgatatgtcctctat 33114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 11380990 - 11381042
Alignment:
Q  232 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctc 285  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11380990 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctc 11381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 49479997 - 49479909
Alignment:
Q  190 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatat 279  Q
    |||||||||||||||| ||||||||||||| |||||||  | |||| ||  ||| || |||| |||||||||  ||||||||||||||||    
T  49479997 agcaattaaatctgaaacgttgattttgatccaatgatttaaattagtttatctcat-ctctaattataactcatcctctcacttgatat 49479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 33114224 - 33114192
Alignment:
Q  158 gagaagatgaaaggtagagattgtagtgcatga 190  Q
    ||||||||||||||||||| |||||||||||||    
T  33114224 gagaagatgaaaggtagaggttgtagtgcatga 33114192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 33352123 - 33352163
Alignment:
Q  248 ctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  33352123 ctctcactataacaactcatctcacttgatatgtcctctat 33352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 20104827 - 20105127
Alignment:
Q  1 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  20104827 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaag 20104926  T
Q  101 accacaaaaactagagggaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgcat----------- 188  Q
    |||||||||| |||||| ||||||||||||||| || |||| || ||||| |||||||||||||||||||| ||||| |||||||||||               
T  20104927 accacaaaaattagaggaaaaaatgtagaagca-acggagatgagggtagacagagtggagaagatgaaagatagaggttgtagtgcatgacccttttta 20105025  T
Q  189 --gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctct 286  Q
      || |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||    
T  20105026 aagaccaattaaatctgaagcgttgattttgatccaatgattcagattaattcctctcatcctctcattataactagtcctctcacttgatatgccctct 20105125  T
Q  287 at 288  Q
    ||    
T  20105126 at 20105127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 37550955 - 37550995
Alignment:
Q  248 ctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  37550955 ctctcactataacaactcctctcacttgatatgtcctctat 37550995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 1e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 32394765 - 32394954
Alignment:
Q  1 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagagaaa 100  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  32394765 atttgatggaaaaataatgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgatagagaag 32394864  T
Q  101 accacaaaaactagagggaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgcatg 189  Q
    |||||||||| |||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  32394865 accacaaaaattagaggaaaaaatgtagaagcagacggagatgagggtaggcagagtggagaagatgaaaggtagaggttgtagtgcatg 32394954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 42848023 - 42847934
Alignment:
Q  191 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||||||| ||| ||||| |||| | |||||||||| | |||||||||||||||| |||||||||||||||||    
T  42848023 gcaattaaatctgaagcgttgatttagatccaatggtccaaactaattcctctcaccctctcattataactattcctctcacttgatatg 42847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 1677662 - 1677572
Alignment:
Q  190 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||||||||| |||||||  | ||||||||||  | | ||||||||||| ||||||||||||||||||||||||    
T  1677662 agcaattaaatctgaagcgttgattttaattcaatagttcagattaatttttttcatcctctcattttaactactcctctcacttgatatg 1677572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 42848613 - 42848702
Alignment:
Q  191 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| | |||||| |||||||||||||||| | ||||||||    
T  42848613 gcaattaaatctgaagcgttgatttagattcaacggtccaaattaattcttctcaccctctccttataactactcctctaatttgatatg 42848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 280
Target Start/End: Original strand, 45632379 - 45632467
Alignment:
Q  191 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    |||||||||||| |||||||||||| ||| ||| | |  | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  45632379 gcaattaaatctaaagcgttgatttagatccaacggtttaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 45632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 1678240 - 1678319
Alignment:
Q  113 agagggaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga 190  Q
    ||||| |||||||||||||||||   ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  1678240 agaggaaaaaatgtagaagcagaagaagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagtgcatga 1678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 1678331 - 1678385
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 243  Q
    |||||||||||| | ||||||||||||||||  |||| | |||||||||||||||    
T  1678331 gagcaattaaatttaaagcgttgattttgatcaaatggttcagattaattcctct 1678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 30266415 - 30266349
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 255  Q
    |||||||||||||||||| |||||||| ||| ||| | || | |||||||||||| | |||||||||    
T  30266415 gagcaattaaatctgaagtgttgatttagatccaacggtctaaattaattcctctcaccctctcatt 30266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 32577238 - 32577419
Alignment:
Q  113 agagggaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga------------gcaattaa 198  Q
    ||||| |||||||||||||||||   ||| |||| ||||| ||||||||||||||||||||||||| |||||| ||||||            ||||||||    
T  32577238 agaggaaaaaatgtagaagcagaagaagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagagcatgacctttttaaagagcaattaa 32577337  T
Q  199 atctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  32577338 atctgaagcgttgattttgatccaatggttcagattaattcctctcatcctctcattctaacaactcctctcacttgatatg 32577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 12293556 - 12293460
Alignment:
Q  192 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||  |  |||||||||||||||||||| |||||||    
T  12293556 caattaaatctgaagcgttgattttgatccaatgatccagattaatttctctcatcctctcatttaagttactcctctcacttgatatgccctctat 12293460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 113 - 284
Target Start/End: Original strand, 12294138 - 12294324
Alignment:
Q  113 agagggaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaatta 197  Q
    ||||| |||||||||||||||||  |||| |||| ||||| ||||||||||||||||||  ||||| |||||||||||||             |||||||    
T  12294138 agaggaaaaaatgtagaagcagaaggagatgagggtaggcgagagtggagaagatgaaaaatagaggttgtagtgcatgatcctttttaaagagcaatta 12294237  T
Q  198 aatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 284  Q
    ||| |||||||||||||||||| ||||| | ||||||||||| ||| |||||||||||  || ||||||||||||||||||||||||    
T  12294238 aatatgaagcgttgattttgatccaatggttcagattaattcatctcatcctctcatttaaattactcctctcacttgatatgtcct 12294324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 117 - 286
Target Start/End: Complemental strand, 9146244 - 9146060
Alignment:
Q  117 ggaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatgagc-------------aattaaatc 201  Q
    |||||||||||||||||||  |||| |||| ||||  ||||||||||||||||||||||||| |||||||| |||| |             |||||||||    
T  9146244 ggaaaaatgtagaagcagaaggagatgagggtaggggagagtggagaagatgaaaggtagaggttgtagtgaatgaccctttttaaagaacaattaaatc 9146145  T
Q  202 tgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctct 286  Q
    |||||||||||||||||| |||   |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  9146144 tgaagcgttgattttgatccaaatgtccaaattaattcctctcatcctctcattataattacacctctcacttgatatggcctct 9146060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 42745725 - 42745629
Alignment:
Q  191 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 287  Q
    ||||||||||||||||||||||||| ||| ||| | |||| |||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||    
T  42745725 gcaattaaatctgaagcgttgatttagatccaacggtccaaattaattcctctcatcctcttattataactactactctcacttgatatgccctcta 42745629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 7831678 - 7831635
Alignment:
Q  237 ttcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  7831678 ttcctctcatcctctcattataactactcctctcacttgatatg 7831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 32576690 - 32576627
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctca 253  Q
    |||||||||||| ||||||||||||||| ||||||||  |||||||||||| ||| |||||||||    
T  32576690 gagcaattaaatttgaagcgttgattttaattcaatg-gccagattaattcttctcatcctctca 32576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 23689 - 23780
Alignment:
Q  193 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 284  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  23689 aattaaatctgaagcgttgattttgatccaatgatctatattaattcctctcatcctctcattataactactactctcacttgatatgtcct 23780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 23641 - 23673
Alignment:
Q  158 gagaagatgaaaggtagagattgtagtgcatga 190  Q
    ||||||||||||||||||| |||||||||||||    
T  23641 gagaagatgaaaggtagaggttgtagtgcatga 23673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10951692 - 10951809
Alignment:
Q  1 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttga 92  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||        | ||||||||||||||||||||||||||    
T  10951692 atttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaaaatttga 10951791  T
Q  93 cagagaaaaccacaaaaa 110  Q
    ||||||| |||| |||||    
T  10951792 cagagaagaccataaaaa 10951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 41609600 - 41609509
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 280  Q
    |||||||||||||||| |||||||||||||| ||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41609600 gagcaattaaatctgatgcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 41609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 14098382 - 14098475
Alignment:
Q  189 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtc 282  Q
    ||||||||||||||||||||||||||||| | ||||| |||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  14098382 gagcaattaaatctgaagcgttgattttgttccaatggtccaaattaattcctgtcatcctctcattgtaactactcctctcacttgatatgtc 14098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 119 - 279
Target Start/End: Original strand, 210321 - 210496
Alignment:
Q  119 aaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctg 203  Q
    ||||| |||||||||||  |||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||             ||||||||||||     
T  210321 aaaaacgtagaagcagaaggagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatcta 210420  T
Q  204 aagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatat 279  Q
    |||||||||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||| |||||| |||||||    
T  210421 aagcgttgattttgatccaatggtccagattaattcctttcatcctctcattctaactacttctctcatttgatat 210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4084397 - 4084280
Alignment:
Q  1 atttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttga 92  Q
    |||||||||| ||| |||||| |||||||||||||||||||| || ||||||||||||||||||        | ||||||||||||||||||||||||||    
T  4084397 atttgattgacaaaaagtgaaagaattgaaaggttaaatattaatcgtggctacaacaaattggtgttggactcttgggtaatgaagcgtgaaaatttga 4084298  T
Q  93 cagagaaaaccacaaaaa 110  Q
    || |||| |||| |||||    
T  4084297 caaagaagaccataaaaa 4084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 232 - 287
Target Start/End: Complemental strand, 29630440 - 29630386
Alignment:
Q  232 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 287  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29630440 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctcta 29630386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 14098342 - 14098307
Alignment:
Q  245 atcctctcattataactactcctctcacttgatatg 280  Q
    |||||||||||||||||||||||||| |||||||||    
T  14098342 atcctctcattataactactcctctctcttgatatg 14098307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 51097564 - 51097509
Alignment:
Q  232 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  51097564 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctctat 51097509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 36930179 - 36930227
Alignment:
Q  237 ttcctcttatcctctcattataactactcctctcacttgatatgtcctc 285  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  36930179 ttcctctcatcctctcattataactacttctctcacttgatatgccctc 36930227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 36681562 - 36681522
Alignment:
Q  248 ctctcattataactactcctctcacttgatatgtcctctat 288  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  36681562 ctctcactataacaactcctctcacttgatatgtcctctat 36681522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 43250920 - 43250883
Alignment:
Q  237 ttcctcttatcctctcattataactactcctctcactt 274  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  43250920 ttcctctcatcctctcattataattactcctctcactt 43250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 18970615 - 18970675
Alignment:
Q  195 ttaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 255  Q
    |||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  18970615 ttaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 18970675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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