View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_16 (Length: 564)
Name: NF15182_low_16
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 15 - 547
Target Start/End: Complemental strand, 43772105 - 43771573
Alignment:
| Q |
15 |
aatattaatcaatattcagcgcagaaggatcccaacaatatttaacgataaatggtacaaatcatagaaaactgagaattgaaataacaacctgaacaga |
114 |
Q |
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| T |
43772105 |
aatattaatcaatattcagctcagaaggatcccaacaatatttaacgataaatggtacaaatcatagaaaactgagaattgaaataacaacctgaacaga |
43772006 |
T |
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| Q |
115 |
tgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataaggcactcactgaaattagggttgca |
214 |
Q |
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| T |
43772005 |
tgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataaggcactcactgaaattagggttgca |
43771906 |
T |
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| Q |
215 |
gttgcaagaacccggtgattgagctgttaaaacaaaacatgtattaaaaatttatgttgttaaatttccacggattggcaaaatggcagtccagtttaag |
314 |
Q |
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| T |
43771905 |
gttgcaagaatccggtgattgagctgttaaaacaaaacatgtattaaaaatttatgttgttaaattcccacggattggcaaaatggcggtccagtttaag |
43771806 |
T |
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| Q |
315 |
tttcnnnnnnntttaagtaacaaaggaaagaactgctgacatctgagatgtaaacattgtctgcaaaaccataattacaaaaataaatgtactgctaatt |
414 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43771805 |
tttcaaaaaaatttaagtaacaaaggaaagaactgctgacatctgagatgtaaacattgtctgcaaaaccataattacaaaaataaatgtactgctaatt |
43771706 |
T |
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| Q |
415 |
tactaccttcaaaaaactactttccaaataaattaaaggacaaccagatcacaattcaagaaacaaaggtactgcaatttttaacttttcagcaataaat |
514 |
Q |
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| T |
43771705 |
tactaccttcaaaaaagtactttccaaataaataaaaggacaaccagatcacaattcaagaaacaaaggtactgcaatttttaacttttcagcaataaat |
43771606 |
T |
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| Q |
515 |
tagcatagataatacctgtacagtcgatgtatt |
547 |
Q |
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| T |
43771605 |
tagcatagataatacctgtacagtcgatgtatt |
43771573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 91 - 260
Target Start/End: Complemental strand, 42358472 - 42358303
Alignment:
| Q |
91 |
aattgaaataacaacctgaacagatgccatgccaaagatgcctccgatcacagaccggactgcaggatgtatgtccagttttcttgttgacaaccataag |
190 |
Q |
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||||||| ||| |||||| | ||||||||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||||||| ||||||| |
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| T |
42358472 |
aattgaagtaataacctgtagagatgccatgccaaagacacctccgatcacagatcgcactgcaggatgtatgtctagctttcttgttgacagccataag |
42358373 |
T |
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| Q |
191 |
gcactcactgaaattagggttgcagttgcaagaacccggtgattgagctgttaaaacaaaacatgtatta |
260 |
Q |
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| T |
42358372 |
gcactcaccgaaattagagttgcagttgcaaggatccggtgattgagctgttaaaacaaaacttgtatta |
42358303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 547
Target Start/End: Complemental strand, 42358016 - 42357961
Alignment:
| Q |
492 |
tttttaacttttcagcaataaattagcatagataatacctgtacagtcgatgtatt |
547 |
Q |
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|||||||||| |||| |||| | |||||||||||||||||||||||||||||||| |
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| T |
42358016 |
tttttaacttctcagggataactcagcatagataatacctgtacagtcgatgtatt |
42357961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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