View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_17 (Length: 558)

Name: NF15182_low_17
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_17
NF15182_low_17
[»] chr7 (23 HSPs)
chr7 (213-537)||(35070023-35070349)
chr7 (213-537)||(35096068-35096385)
chr7 (11-145)||(35070417-35070551)
chr7 (19-145)||(35096453-35096579)
chr7 (21-145)||(35079115-35079239)
chr7 (11-145)||(35093205-35093339)
chr7 (56-145)||(43029898-43029987)
chr7 (57-142)||(42800912-42800997)
chr7 (67-142)||(34150982-34151057)
chr7 (67-142)||(34176067-34176142)
chr7 (86-145)||(42835610-42835669)
chr7 (67-145)||(33864559-33864637)
chr7 (213-301)||(35093027-35093115)
chr7 (81-145)||(36741467-36741531)
chr7 (50-143)||(45582136-45582229)
chr7 (213-301)||(35078937-35079025)
chr7 (67-145)||(38288231-38288309)
chr7 (94-139)||(38155331-38155376)
chr7 (85-145)||(38283759-38283819)
chr7 (60-124)||(44958703-44958767)
chr7 (332-384)||(18045274-18045326)
chr7 (332-384)||(35078849-35078900)
chr7 (216-256)||(42835714-42835754)
[»] chr5 (2 HSPs)
chr5 (21-145)||(9666589-9666713)
chr5 (220-301)||(9666810-9666891)
[»] chr6 (5 HSPs)
chr6 (67-145)||(25570616-25570694)
chr6 (67-145)||(26005084-26005162)
chr6 (85-145)||(4161463-4161523)
chr6 (85-143)||(4223085-4223143)
chr6 (105-145)||(26123895-26123935)
[»] scaffold0187 (1 HSPs)
scaffold0187 (332-460)||(30488-30617)
[»] chr3 (3 HSPs)
chr3 (332-460)||(13220066-13220195)
chr3 (394-460)||(21660005-21660071)
chr3 (85-145)||(2220578-2220638)
[»] chr1 (2 HSPs)
chr1 (332-460)||(37908460-37908589)
chr1 (85-145)||(52214743-52214803)
[»] scaffold0176 (1 HSPs)
scaffold0176 (91-145)||(20475-20529)
[»] scaffold0002 (1 HSPs)
scaffold0002 (399-460)||(237514-237575)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 213 - 537
Target Start/End: Complemental strand, 35070349 - 35070023
Alignment:
Q  213 tgaattacaatattaactatccttttgggtaattttatttttattcgatgtagtattagacatgtagttattgttaggctatatattctatcgtgtt--- 309  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||       
T  35070349 tgaattacaatattaactatccttttgggtaattttatttgtattcgatgtagtattagacatgtagttattgttgggctatatattctctcttgttatt 35070250  T
Q  310 gaatgatactgaaagatacacagttccaagctaatggttgataaaatggattttggttatagttttctttgcgatagtttagatgaggtggtacttgtga 409  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  35070249 gaatgataatgaaagatacgcagttccaagttaatggttgataaaatggattttgattatagttttctttgcgatagtttggatgaggtggtacttgtga 35070150  T
Q  410 tattttggcttgggacacaatttatttgacagtcttttggatgttaaatactattagatactacaccaaaatagtgattttatatcccttttctaagata 509  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35070149 tatttcggcttgggacacaatttatttggcagtcttttggatgttaaatactattagatactacaccaaaatagtgatttt-tatcccttttctaagata 35070051  T
Q  510 tgttttaaaagtgtggcttgcttttgtc 537  Q
    ||||||||||||||||||||||||||||    
T  35070050 tgttttaaaagtgtggcttgcttttgtc 35070023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 213 - 537
Target Start/End: Complemental strand, 35096385 - 35096068
Alignment:
Q  213 tgaattacaatattaactatccttttgggtaattttatttttattcgatgtagtattagacatgtagttattgttaggctatatattctatcgtgttgaa 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| || ||||       
T  35096385 tgaattacaatattaactatcattttgggtaattttatttttattcaatatagtattagacatgtagttattgttgggctatatattctctcttgtt--- 35096289  T
Q  313 tgatactgaaagatacacagttccaagctaatggttgataaaatggattttggttatagttttctttgcgatagtttagatgaggtggtacttgtgatat 412  Q
        | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  35096288 ----attgaaagatacgcagttccaagctaatggttgataaaatggattttggttatagttttctttgagatagtttggatgaggtggtacttgtgatat 35096193  T
Q  413 tttggcttgggacacaatttatttgacagtcttttggatgttaaatactattagatactacaccaaaatagtgattttatatcccttttctaagatatgt 512  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35096192 ttcggcttgggacacaatttatttggcagtcttttggatgttaaatactattagatactacatcaaaatagtgattttatatcccttttctaagatatgt 35096093  T
Q  513 tttaaaagtgtggcttgcttttgtc 537  Q
    |||||||||||||||||||||||||    
T  35096092 tttaaaagtgtggcttgcttttgtc 35096068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 35070551 - 35070417
Alignment:
Q  11 cagagatccaaatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaa 110  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35070551 cagagacccaaatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaa 35070452  T
Q  111 gtaaatgaacaatgccagcttataattttgtagtg 145  Q
    |||||||||||||||||||||||||||||||||||    
T  35070451 gtaaatgaacaatgccagcttataattttgtagtg 35070417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 35096579 - 35096453
Alignment:
Q  19 caaatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatga 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35096579 caaatgatcgtcgtaaagacactcgtttctgtggtgatggtggttgtcgttggtttgaagagaatgttattcacgagatgcttaaagatgaagtaaatga 35096480  T
Q  119 acaatgccagcttataattttgtagtg 145  Q
    |||||||||||||||||||||||||||    
T  35096479 acaatgccagcttataattttgtagtg 35096453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 35079239 - 35079115
Alignment:
Q  21 aatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaac 120  Q
    ||||||||||||| |   |||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35079239 aatgatcgtcgtagaaggactattttctgtggtgttgggggttgtcgttggtttggagagaatgttattcatgagatgcttaaagatgaagtaaatgaac 35079140  T
Q  121 aatgccagcttataattttgtagtg 145  Q
    |||||||||||||||||||||||||    
T  35079139 aatgccagcttataattttgtagtg 35079115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 35093339 - 35093205
Alignment:
Q  11 cagagatccaaatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaa 110  Q
    |||||| || ||||||||||||| |   |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  35093339 cagagaccctaatgatcgtcgtagaaggactattttctgtggtggtggtggttgtcgttggtttggagagaatgttattcatgagatgcttatagatgaa 35093240  T
Q  111 gtaaatgaacaatgccagcttataattttgtagtg 145  Q
    |||||||||||||| ||||||||||||||||||||    
T  35093239 gtaaatgaacaatgtcagcttataattttgtagtg 35093205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 43029898 - 43029987
Alignment:
Q  56 tggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  43029898 tggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgacagcttataattttatagtg 43029987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 42800912 - 42800997
Alignment:
Q  57 ggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 142  Q
    |||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42800912 ggtggtggttgttggattgaagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccaccttataattttgta 42800997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 34150982 - 34151057
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 142  Q
    ||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34150982 gttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34151057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 34176142 - 34176067
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 142  Q
    ||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34176142 gttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34176067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 42835610 - 42835669
Alignment:
Q  86 tattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42835610 tattcacgagatgcttaaagatgaagtaaatgaacaatgccaccttataattttgtagtg 42835669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 33864559 - 33864637
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| |||||||    
T  33864559 gttggttaggaaagaatgttattcgcgagatgcttaaggatgaagtaaatgaacaatgtcagcttattattctgtagtg 33864637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 35093115 - 35093027
Alignment:
Q  213 tgaattacaatattaactatccttttgggtaattttatttttattcgatgtagtattagacatgtagttattgttaggctatatattct 301  Q
    |||| |||||||||||||||||  ||||||| ||||||||||||||| || ||||||| | |||||||||||||| ||||||| |||||    
T  35093115 tgaactacaatattaactatccagttgggtatttttatttttattcgttgcagtattaaatatgtagttattgttgggctatacattct 35093027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 36741531 - 36741467
Alignment:
Q  81 aatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  36741531 aatgttatttatgagatgcttaaagatgaagtaaataaacaatgtcaacttataattttgtagtg 36741467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 45582136 - 45582229
Alignment:
Q  50 tggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 143  Q
    |||| ||| ||||||| |||||||||   | ||||||||||| |||||||| ||||| ||||||||||||| ||| || |||||||||||||||    
T  45582136 tggttatgatggttgttgttggtttgtgcaaaatgttattcaggagatgctcaaagacgaagtaaatgaaccatgtcaacttataattttgtag 45582229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 35079025 - 35078937
Alignment:
Q  213 tgaattacaatattaactatccttttgggtaattttatttttattcgatgtagtattagacatgtagttattgttaggctatatattct 301  Q
    |||| |||||||||||||||||  | || || ||||||||||||||| |||| ||||| ||||||| |||||||| ||||||| |||||    
T  35079025 tgaactacaatattaactatccagtcggttatttttatttttattcgttgtaatattaaacatgtaattattgttgggctatacattct 35078937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 38288231 - 38288309
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||||| | ||||| ||||||| || |||||||||||||||||||||||||| || ||  |||||||| |||||||    
T  38288231 gttggtttgaacagaatcttattcaagaaatgcttaaagatgaagtaaatgaacattgtcaatttataattctgtagtg 38288309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 38155376 - 38155331
Alignment:
Q  94 agatgcttaaagatgaagtaaatgaacaatgccagcttataatttt 139  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  38155376 agatgcttaaagatgaagtacatgaacaatgtcaacttataatttt 38155331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 38283819 - 38283759
Alignment:
Q  85 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| || |||||| |||||||||| ||||||||||| |||||| || ||||||||||    
T  38283819 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttgtagttttgtagtg 38283759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 44958703 - 44958767
Alignment:
Q  60 ggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatg 124  Q
    |||||| |||||||||   | ||||||||||| ||||||||||||||| |||||||| |||||||    
T  44958703 ggttgttgttggtttgagtataatgttattcaagagatgcttaaagataaagtaaatcaacaatg 44958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 18045274 - 18045326
Alignment:
Q  332 gttccaagctaatggttgataaaatggattttggttatagttttctttgcgat 384  Q
    |||||||| |||||   ||||||| |||||||||||||||||||| |||||||    
T  18045274 gttccaagttaatgtcggataaaaaggattttggttatagttttccttgcgat 18045326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 35078900 - 35078849
Alignment:
Q  332 gttccaagctaatggttgataaaatggattttggttatagttttctttgcgat 384  Q
    |||||||||||||| |||||||||| | ||| ||||||||||||| |||||||    
T  35078900 gttccaagctaatgcttgataaaatag-tttcggttatagttttccttgcgat 35078849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 42835714 - 42835754
Alignment:
Q  216 attacaatattaactatccttttgggtaattttatttttat 256  Q
    |||||||||||||||||||||||||||  |||||| |||||    
T  42835714 attacaatattaactatccttttgggtgtttttatatttat 42835754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 9666589 - 9666713
Alignment:
Q  21 aatgatcgtcgtaaagacactagtttctgtggtgatggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaac 120  Q
    ||||||||||||| |   |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  9666589 aatgatcgtcgtagaaggactattttctgtggtggtggtggttgtcgttggtttggagagaatgttattcatgagatgtttaaagatgaagtaaatgaac 9666688  T
Q  121 aatgccagcttataattttgtagtg 145  Q
    ||||||| |||||||||||||||||    
T  9666689 aatgccaacttataattttgtagtg 9666713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 9666810 - 9666891
Alignment:
Q  220 caatattaactatccttttgggtaattttatttttattcgatgtagtattagacatgtagttattgttaggctatatattct 301  Q
    ||||||||||||| |  ||||||| ||||||||||||||| |||||||||| |||| ||||||| ||| ||||||| |||||    
T  9666810 caatattaactattcagttgggtatttttatttttattcgttgtagtattaaacatatagttatcgttgggctatacattct 9666891  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 25570616 - 25570694
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  25570616 gttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtg 25570694  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 26005084 - 26005162
Alignment:
Q  67 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||    
T  26005084 gttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtg 26005162  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 4161523 - 4161463
Alignment:
Q  85 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  4161523 ttattcatgaggtgcttaaagatgaagtagatgaacaatgccaacttataattttgtagtg 4161463  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 4223143 - 4223085
Alignment:
Q  85 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 143  Q
    ||||||| ||| |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  4223143 ttattcatgaggtgcttacagatgaagtagatgaacaatgccaacttataattttgtag 4223085  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 26123895 - 26123935
Alignment:
Q  105 gatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  26123895 gatgaagtaaatgaacaatgtcagcttataattctgtagtg 26123935  T

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Target: scaffold0187 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 332 - 460
Target Start/End: Original strand, 30488 - 30617
Alignment:
Q  332 gttccaagctaatggttgataaaatggattttggttatagttttctttgcgatagttt-agatgaggtggtacttgtgatattttggcttgggacacaat 430  Q
    |||||||| |||||   ||||||| |||||||||||||||||||| ||||||| ||   ||| ||||||||||||||||||||| |||||||||| || |    
T  30488 gttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcatt 30587  T
Q  431 ttatttgacagtcttttggatgttaaatac 460  Q
    ||||||| || | || ||||||||||||||    
T  30588 ttatttggcaattttctggatgttaaatac 30617  T

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Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 332 - 460
Target Start/End: Original strand, 13220066 - 13220195
Alignment:
Q  332 gttccaagctaatggttgataaaatggattttggttatagttttctttgcgatagtttag-atgaggtggtacttgtgatattttggcttgggacacaat 430  Q
    |||||||| |||||   ||||||| |||||||||||||||||||| ||||||| ||   | | ||||||||||||||||||||| |||||||||| || |    
T  13220066 gttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgggacgaggtggtacttgtgatatttcggcttgggacgcatt 13220165  T
Q  431 ttatttgacagtcttttggatgttaaatac 460  Q
    ||||||| |||| || ||||||||||||||    
T  13220166 ttatttggcagttttctggatgttaaatac 13220195  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 460
Target Start/End: Complemental strand, 21660071 - 21660005
Alignment:
Q  394 gaggtggtacttgtgatattttggcttgggacacaatttatttgacagtcttttggatgttaaatac 460  Q
    ||||||||||||||||||||| |||||||||| || |||||||| |||| || ||||||||||||||    
T  21660071 gaggtggtacttgtgatatttcggcttgggacgcattttatttggcagttttctggatgttaaatac 21660005  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 2220638 - 2220578
Alignment:
Q  85 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| || |||||| |||||||||| ||||||||||| ||||||||| |||| |||||    
T  2220638 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttatagttttttagtg 2220578  T

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Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 332 - 460
Target Start/End: Complemental strand, 37908589 - 37908460
Alignment:
Q  332 gttccaagctaatggttgataaaatggattttggttatagttttctttgcgatagttt-agatgaggtggtacttgtgatattttggcttgggacacaat 430  Q
    |||||||| |||||   ||||||| |||||||||||||||||||| ||||||| ||   ||| ||||||||||||||||||||| |||||||||| || |    
T  37908589 gttccaagttaatgccggataaaaaggattttggttatagttttccttgcgatggtccgagacgaggtggtacttgtgatatttcggcttgggacgcatt 37908490  T
Q  431 ttatttgacagtcttttggatgttaaatac 460  Q
    ||||||| || | || ||||||||||||||    
T  37908489 ttatttggcaattttctggatgttaaatac 37908460  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 52214803 - 52214743
Alignment:
Q  85 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||| ||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  52214803 ttattcatgaggtgcttaaagatgaagtagatgaacaatcccaacttataattttgtagtg 52214743  T

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Target: scaffold0176 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 20529 - 20475
Alignment:
Q  91 acgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 145  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  20529 acgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattttgtagtg 20475  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 460
Target Start/End: Complemental strand, 237575 - 237514
Alignment:
Q  399 ggtacttgtgatattttggcttgggacacaatttatttgacagtcttttggatgttaaatac 460  Q
    ||||||||||||||||  ||||||||| || |||||||| |||| || ||||||||||||||    
T  237575 ggtacttgtgatatttctgcttgggacgcattttatttggcagttttctggatgttaaatac 237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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