View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_18 (Length: 537)
Name: NF15182_low_18
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_18 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 4129566 - 4130085
Alignment:
| Q |
18 |
taaactatgatcaaataatagttttttccttaacaatggtagtattcatctcaagcatattatttacctgccaatgacatcactcaaagttacattgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129566 |
taaactatgatcaaataatagttttttccttaacaatggtagtattcatctcaagcatattatttacctgccaatgacatcactcaaagttacattgttg |
4129665 |
T |
|
| Q |
118 |
tttgagttagatcgatgactttgttgagaagattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129666 |
tttgagttagatcgatgactttgttgagaagattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatct |
4129765 |
T |
|
| Q |
218 |
cacttatgagcatcaaaacaacagttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129766 |
cacttatgagcatcaaaacaacagttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgct |
4129865 |
T |
|
| Q |
318 |
ttcaaaggatgcatcccatacctctcgatctattagggatatagtattttcttctaaccatagcttccatgcctagaaagaaacaaaacaaagataaagt |
417 |
Q |
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| T |
4129866 |
ttcaaaggatgcatcccatacctctcgatctattagggatatagtattttcttctaaccatagcttccatgcctagaaagaaacaaaacaaagataaagt |
4129965 |
T |
|
| Q |
418 |
tattactaataatattgagattctttctaaatttgcctcaaacactctttttattattggttaaaatttgcgcaggcacttcagttgtgaaaatgggtcc |
517 |
Q |
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| T |
4129966 |
tattactaataatattgagattctttctaaatttgcctcaaacactctttttattattggttaaaatttgcgcagacatttcagttgtgaaaatggatcc |
4130065 |
T |
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| Q |
518 |
cataatataaaaactctaat |
537 |
Q |
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|||||||||||||||||||| |
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| T |
4130066 |
cataatataaaaactctaat |
4130085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 47 - 489
Target Start/End: Original strand, 4141947 - 4142388
Alignment:
| Q |
47 |
ttaacaatggtagtattcatctcaagcatattatttacctgccaatgacatcactcaaagttacattgttgtttgagttagatcgatgactttgttgaga |
146 |
Q |
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||||||||||||||||| ||| || |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141947 |
ttaacaatggtagtattgatcccatgcatattatttacctgcctgtgacatcgctcatggttacattgttgtttgagttagatcgatgactttgttgaga |
4142046 |
T |
|
| Q |
147 |
agattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatctcacttatgagcatcaaaacaacagttgat |
246 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||||| |
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| T |
4142047 |
agattctgtacttcgagaattttgcttgtgaacaaatgcaactttaccaggaggtggaagatgtgtgatctcacttataagcatcaaaactacggttgat |
4142146 |
T |
|
| Q |
247 |
atacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgctttcaaaggatgcatcccatacctctcgat |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||||| ||| |
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| T |
4142147 |
atacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctactctcaaaagatgcatcccaaacctctggat |
4142246 |
T |
|
| Q |
347 |
ctattagggatatagtattttcttctaaccatagcttccatgcctagaaa--gaaacaaaacaaagataaagttattactaataatattgagattctttc |
444 |
Q |
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| T |
4142247 |
ctattagagatataatgttttcttctaaccatagcttccatgcctagtaattgaaacaaaacaatgataaacttattattagtaata--gagattctttc |
4142344 |
T |
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| Q |
445 |
taaatttgcctcaaacactctttttattattggttaaaatttgcg |
489 |
Q |
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| T |
4142345 |
taaatttgcttccaacactc-ttttaatattggttaaaatttgcg |
4142388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 73 - 439
Target Start/End: Original strand, 4119586 - 4119960
Alignment:
| Q |
73 |
catattatttacctgccaatgacatcactcaaagttacattgttgtttgagttagatcgatgactttgttgagaagattctgtacttcga---gaatttt |
169 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || | |||||||||||||||| | | ||||||| |
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| T |
4119586 |
catattatttacctgcctgtgacatcactcaaagttacattgttgtttgagttagattgatgcctcttttgagaagattctgtagtactctttgaatttt |
4119685 |
T |
|
| Q |
170 |
ggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatctcacttatgagcatcaaaacaacagttgatatacttggtctttcttttggaag |
269 |
Q |
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| ||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
4119686 |
gcttgtgaacaaatgcaactttacctggaggtggaagatgccttatctcatttatgagcatcaaaactacggttgatatacttggtctttcttttggaag |
4119785 |
T |
|
| Q |
270 |
ttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgctttcaaaggatgcatcccatacctctcgatctattagggatatagtattttct |
369 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| |||||| | |||||| |
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| T |
4119786 |
ttcttgcacacaaagaagtcctatgtgtatgcaccttaacatgctgctctcaaaacatgcatcccatacctctggatctattagagatataatgttttct |
4119885 |
T |
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| Q |
370 |
tctaaccatagcttccatgcctagaaagaaacaaaacaaa-----gataaagttattactaataatattgagatt |
439 |
Q |
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| T |
4119886 |
tctaaccatagcttccatgccttgtaaaaaataaaaaaaattaataataaagttattactaatcatattgagatt |
4119960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 97 - 405
Target Start/End: Original strand, 4159136 - 4159446
Alignment:
| Q |
97 |
tcactcaaagttacattgttgtttgagttagatcgatgactttgttgagaagattctgtacttcgagaattttggttgtgaacaaatgcaactttaccgg |
196 |
Q |
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||||||| ||||||| ||||||||||||||||| | ||||||| ||||||||||||| ||| ||||||| ||||| |||||||||||||| || | |
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| T |
4159136 |
tcactcagagttacactgttgtttgagttagattgttgacttttttgagaagattctccactcttggaatttttcttgtggacaaatgcaacttttcctg |
4159235 |
T |
|
| Q |
197 |
gaggtggaagatgtgtaatctcacttatgagcatcaaaacaacagttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtg |
296 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
4159236 |
gaggaggaagatgtgtaatctcacttatgagcatcaaaacaactgttgatatatttggtctgtctcttggaagttcttgcacacagagaagtcctatgtg |
4159335 |
T |
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| Q |
297 |
catgcacctcaacatgctgctttcaaaggatgcatcccatacctctcgatctattagggatatagtattttcttctaaccatagcttccatgcctag--a |
394 |
Q |
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| T |
4159336 |
tatgcacctcaacatgctgctctcaaaagatgcatcccaaacctctcgatctattagagatataatgttttcttctaaccatagcttccatgcctagtaa |
4159435 |
T |
|
| Q |
395 |
aagaaacaaaa |
405 |
Q |
| |
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||||||||||| |
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| T |
4159436 |
aagaaacaaaa |
4159446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 40 - 391
Target Start/End: Original strand, 4149962 - 4150317
Alignment:
| Q |
40 |
tttttccttaacaatggtagtattcatctcaagcatatta-tttacctgccaatgacatcactcaaagttacattgttgtttgagttagatcgatgactt |
138 |
Q |
| |
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||||| ||||||||| ||||||| ||| || |||| ||| |||||||||| || ||||| | ||||||||||||||||||||||||| |||||||| |
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| T |
4149962 |
ttttttcttaacaattatagtattgatcccatgcatgttagtttacctgccttgaacttcactgagagttacattgttgtttgagttagattgatgactt |
4150061 |
T |
|
| Q |
139 |
tgttgagaagattctgtacttcga---gaattttggttgtgaacaaatgcaactttaccgggaggtggaagatgtgtaatctcacttatgagcatcaaaa |
235 |
Q |
| |
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| |||||||||||||||| | | ||| |||| |||||||||||||||||| | || ||||| |||||||||||||| ||||||| |||||||||| |
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| T |
4150062 |
ttttgagaagattctgtagtactctttgaactttgcttgtgaacaaatgcaactctccccggaggaggaagatgtgtaatttcacttacaagcatcaaaa |
4150161 |
T |
|
| Q |
236 |
caacagttgatatacttggtctttcttttggaagttcttgcacacaaagaagtcctatgtgcatgcacctcaacatgctgctttcaaaggatgcatccca |
335 |
Q |
| |
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|||||||||||||| ||||||| ||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||| |
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| T |
4150162 |
caacagttgatatatttggtctgtctcttggaagttcttgtacacaaagaagtccgatgtgtatgcaccttaacatgctgctctcaaaacatgcatccca |
4150261 |
T |
|
| Q |
336 |
tacctctcgatctattagggatatagtattttcttctaaccatagcttccatgcct |
391 |
Q |
| |
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||||||| |||||||||| |||||| | |||||||||||||||||||||||||||| |
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| T |
4150262 |
tacctctggatctattagagatataatgttttcttctaaccatagcttccatgcct |
4150317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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