View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_20 (Length: 531)
Name: NF15182_low_20
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 158 - 515
Target Start/End: Original strand, 131217 - 131577
Alignment:
| Q |
158 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
257 |
Q |
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| T |
131217 |
aagcagaagcagcagcagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgc |
131316 |
T |
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| Q |
258 |
cggcggtgttgccatgtaaggaatatggcttgaggagcctg---gtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaatcct |
354 |
Q |
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| T |
131317 |
cggcggtgttgccatgtaaggaatatggcttgaggagcctgcaggtttctgcaatatattaccatcacaaacacacttattaatcatcaattccaatcct |
131416 |
T |
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| Q |
355 |
tatatgtatgtaaataaatataaatactgatgaaaataggttacctggtgattcactttggcattagcataatgcattatgagtttcacttcacctgcgt |
454 |
Q |
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| T |
131417 |
tatatgtatgtaaataaatataaatactgatgaaaataggttacctggtgattcactttggcattagcataatgcattatgagtttcacttcacctgcgt |
131516 |
T |
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| Q |
455 |
gtctgccaaccagacagacaaagatatagtaataatgcactatcaaaacttgaacaatagt |
515 |
Q |
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| T |
131517 |
gtctgccaaccagacagacaaagatataggaataatgcactatcaaaacttgaacaatagt |
131577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 131060 - 131149
Alignment:
| Q |
1 |
ccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggtatggc |
90 |
Q |
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| T |
131060 |
ccagcgtttggaggataacctgtaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggtatggc |
131149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 173 - 351
Target Start/End: Complemental strand, 161720 - 161543
Alignment:
| Q |
173 |
cagcaggtattgctggattgtgataattagagtgtggttgttgctgtgggtagtaggaaggaacctgattatataacgggactgccggcggtg---ttgc |
269 |
Q |
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| T |
161720 |
cagcaggtgttgttggatggtgataattagagtgtggttgttg---tgggtagtaggaaggaacgtgattatatgatgggactgccggcgttggcattgc |
161624 |
T |
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| Q |
270 |
catgtaaggaatatggcttgaggagcctggtttctgcaatatattacaatcacaaacacacttattaatcatcaattccaat |
351 |
Q |
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| T |
161623 |
tgtatagggagtatggcttgaggagcctggtttctgcaatatattagcatcccaaacacactcattaa-gatcaattccaat |
161543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 161988 - 161903
Alignment:
| Q |
1 |
ccagcgtttggaggataacctggaggtggagggtatgaaggcggtggataggctgaagatggaggataagagtggggaggagggta |
86 |
Q |
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| T |
161988 |
ccagtgtttggaggataacctgcaggtggagggtatgatggtggtggataagctgaagatggcggataagagtggggaggagggta |
161903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Complemental strand, 161512 - 161479
Alignment:
| Q |
391 |
taggttacctggtgattcactttggcattagcat |
424 |
Q |
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| T |
161512 |
taggttacctggtgattcactttggcattggcat |
161479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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