View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_low_22 (Length: 499)
Name: NF15182_low_22
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_22 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4203144 - 4202961
Alignment:
| Q |
1 |
aaatggtgtgtatggttctgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaaggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4203144 |
aaatggtgtgtatggttctgagtatagagtgtgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaaggga |
4203045 |
T |
|
| Q |
101 |
cgtggttatgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4203044 |
cgtggttatgattgtagtactcatttgaagagtacttggattccttcgacacgtcgtcgagaacgggaggtggagatgtttgcc |
4202961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 4202944 - 4202807
Alignment:
| Q |
213 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcccaaaatgctgctgctacttctcatagctctaactctaatggtactacaccaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202944 |
agggttgttctggtgttaagagacaaaaaggtttattagggtcatcacaaaatgctgctgctacttctcatagctctaactctaatggtactacaccaaa |
4202845 |
T |
|
| Q |
313 |
gagttttgctactagctcttgtcaccaaggtactttca |
350 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4202844 |
gagttttgctactagctcctgtcaccaaggtactttca |
4202807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 4202777 - 4202732
Alignment:
| Q |
350 |
atttctaatttttaaatgtttagattgacaaggaaattggtagaat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4202777 |
atttctaatttttaaatgtttagattgacaaggaaattggtagaat |
4202732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 17082 - 16960
Alignment:
| Q |
19 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
118 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||| ||||||||||||||| | || ||||||||||||||||||||| || ||||| | |||||||||| |
|
|
| T |
17082 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
16983 |
T |
|
| Q |
119 |
actcatttgaagagtacttggat |
141 |
Q |
| |
|
||||| ||||||| || ||||| |
|
|
| T |
16982 |
actcacgtgaagagcacgtggat |
16960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 14512731 - 14512853
Alignment:
| Q |
19 |
tgagtatagagtttgtcaagattgtggtaatagggctaagaaagattgtgtgtttagaagatgtaggacttgttgtaagggacgtggttatgattgtagt |
118 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||| ||||||||||||||| | || ||||||||||||||||||||| || ||||| | |||||||||| |
|
|
| T |
14512731 |
tgagtttagggtttgtcaagattgtggaaatagagctaagaaagattgtagctataaaagatgtaggacttgttgtaaaggtcgtggatttgattgtagt |
14512830 |
T |
|
| Q |
119 |
actcatttgaagagtacttggat |
141 |
Q |
| |
|
||||| ||||||| || ||||| |
|
|
| T |
14512831 |
actcacgtgaagagcacgtggat |
14512853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University