View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_28 (Length: 476)
Name: NF15182_low_28
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 454
Target Start/End: Original strand, 26180782 - 26181223
Alignment:
| Q |
2 |
ttgacttgaaacttcaattgacaaggacacctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataagagat |
101 |
Q |
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| T |
26180782 |
ttgacttgaaacttcaattgacaaggacgcctataaatatgagctgttattttaacatcaaaatacaagcaatgtatgtgtttatttaagcataagagat |
26180881 |
T |
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| Q |
102 |
gcactgtcaactattcattttcaacaaatataccatcattgattcactatggccaacgaacaaggtgatatcaagctttccgtgtagactactggatccg |
201 |
Q |
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| T |
26180882 |
gcactgtcaactattcattttcaacaaata-----------attcactatggccaacgaacaaggtgatatcaagctttccatgtagactactggatccg |
26180970 |
T |
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| Q |
202 |
tataagctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtatcatcatgctgcattagaaa |
301 |
Q |
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| T |
26180971 |
tataagctctatgttgaagctcgagaatgttagaggtataatttctggaatgatagactcccaactgacattgccccgtatcatcatgctgcattagaaa |
26181070 |
T |
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| Q |
302 |
ctgttcatcctctgaaatatataaaacattggcaatggaatgctgaactgcaatggaaggaatggtgtacaatatatgccatgactctttatttccgaat |
401 |
Q |
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| T |
26181071 |
ctgttcatcctctgaaatatataaaacattggcaatggaatgctgaactgcaatggaaggaatggtgtacaatatatgccatgactctttatttccgaat |
26181170 |
T |
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| Q |
402 |
tccatcatcatccatatatctgtacccctatcattgcaatcaaatatgcacaa |
454 |
Q |
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| T |
26181171 |
tccatcatcatccatatatctgtacccctatcattgcaatcaaatatgcacaa |
26181223 |
T |
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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 1189893 - 1189976
Alignment:
| Q |
5 |
acttgaaacttcaattgacaaggacacctataaatatgagct--gttattttaacatcaaaatacaagcaatgtatgtgtttat |
86 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
1189893 |
acttgaaacttcaattgaccaggacccctataaatatgaggtatgttattttaacatcaaaatacatgcaatgtatgtgtttat |
1189976 |
T |
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