View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_29 (Length: 461)
Name: NF15182_low_29
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 51114945 - 51115377
Alignment:
| Q |
17 |
catgtagaacaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttgca |
116 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114945 |
catgtagaacaatgtttcgcacgaagaggcctaacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaaaagggctcataatcttgca |
51115044 |
T |
|
| Q |
117 |
ttttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115045 |
ttttcttaatgtcataatgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctcc |
51115144 |
T |
|
| Q |
217 |
aaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115145 |
aaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgccaacacgaccgaataaatataggtgaaaaatagcatagaaattatgcac |
51115244 |
T |
|
| Q |
317 |
ttgagtcctgataaaacaacgaagtcttcaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgattat |
416 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51115245 |
ttgagtcctgataaaacaacgaagtctccaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgtgattat |
51115344 |
T |
|
| Q |
417 |
gagaaacaagttgcgctggtgtaaggccagtat |
449 |
Q |
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| T |
51115345 |
gagaaacaagttgcgatggtgtaaggccagtat |
51115377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 51105401 - 51105473
Alignment:
| Q |
25 |
acaatgtttcgcacgaagaggcctgacaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
97 |
Q |
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||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
51105401 |
acaatgtttcgtacgaagaggcctgataatcttgcgtgttgcacaaatttgggaccaatttccagctagcaaa |
51105473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 51105533 - 51105636
Alignment:
| Q |
133 |
atgcccattcattctgatataacctggatccttcttgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaagg |
232 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| ||| | |||||| || ||||||||||| |||||| |||||||||| |||||||| |
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| T |
51105533 |
atgcccattcattctgatattacctggatccttggtgctacacctataagacatcaacaacccaacagtagctagtaacactccaaaccatgcaaaaagg |
51105632 |
T |
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| Q |
233 |
ccgg |
236 |
Q |
| |
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|||| |
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|
| T |
51105633 |
ccgg |
51105636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 267
Target Start/End: Complemental strand, 48037342 - 48037243
Alignment:
| Q |
168 |
tgctacacatatgaaacatcacaaatccaacagtagcaagtaacgctccaaaccaaccaaaaaggccggttgtagttgttagcgttggcatatttgttgc |
267 |
Q |
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|||||||| ||| ||||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| | || | ||| ||| |||||||||||||||| |
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| T |
48037342 |
tgctacacctataaaacatcaccaatccaacagtagcaagcaacactccaaaccatgcaaagaggccagctgatgctgtcagctttggcatatttgttgc |
48037243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 48038384 - 48038337
Alignment:
| Q |
50 |
acaatcttgcatgttgaacaaagttgggaccaatttccagctagcaaa |
97 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
48038384 |
acaaccttgcatgttgcacaaagttgggaccaatttccagctagcaaa |
48038337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 48038556 - 48038517
Alignment:
| Q |
17 |
catgtagaacaatgtttcgcacgaagaggcctgacaatct |
56 |
Q |
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||||||||||||||||| ||||||||||| |||||||||| |
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| T |
48038556 |
catgtagaacaatgttttgcacgaagaggtctgacaatct |
48038517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 48038096 - 48038064
Alignment:
| Q |
133 |
atgcccattcattctgatataacctggatcctt |
165 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
48038096 |
atgcccattcgttctgatataacctggatcctt |
48038064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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