View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_3 (Length: 690)
Name: NF15182_low_3
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 434 - 602
Target Start/End: Complemental strand, 28638203 - 28638031
Alignment:
| Q |
434 |
cagttgcagttatagcatgtgaatctcactcgctgttctactttaggattttagattataaacaaaattgattaatt-----aaaatatggtttgttgct |
528 |
Q |
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| T |
28638203 |
cagttgcagttatagcatgtgaatctcactcgctgttctactttaggattttagattataaacaaaattgattaattaaaagaaaatatggtttgttgct |
28638104 |
T |
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| Q |
529 |
tatcatattgttggtgctagctgagctctgaaatctggctggt-aaaatattgtccggcaagtacattcgagcat |
602 |
Q |
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| T |
28638103 |
tatcatattgttggt--cagctgagctctgaaatctcgctagtaaaaatattgtccggcaagtacattcgagcat |
28638031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 187 - 285
Target Start/End: Complemental strand, 28638451 - 28638353
Alignment:
| Q |
187 |
ctaaggagggttcgagaaaacatttgaggtttgtggctgaaaatggtctgagacaaaggacacgtgtcgtgttgttgtgatgtgttattttttattggg |
285 |
Q |
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| T |
28638451 |
ctaaggagggttcgagaaaacatttgaggtttgtggctgaaaatggtctgagacaaaggacacgtgtcgtgttgttgtgatgtgttattttttattggg |
28638353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 28638314 - 28638258
Alignment:
| Q |
323 |
gtggttcagattttatttgtggaagagattagtgcagagaagataattgagaagata |
379 |
Q |
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| T |
28638314 |
gtggttcagattttatttgtggaagagattagtgcagagaagataattgagaagata |
28638258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 666
Target Start/End: Complemental strand, 28638027 - 28637985
Alignment:
| Q |
624 |
aattgaattttgaattttccccgtgtttattttaaatggcgaa |
666 |
Q |
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| T |
28638027 |
aattgaactttgaattttccctatgtttattttaaatggcgaa |
28637985 |
T |
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