View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_30 (Length: 454)
Name: NF15182_low_30
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_30 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 47200656 - 47201099
Alignment:
| Q |
1 |
gcagaaccggaactttcggtgctcgttcaagaacggcgtcatttagttccgcgctttgttctttaaccgagttggaagaaagccagagtgaagtcgatgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47200656 |
gcagaaccggaactttcggtgctcgttcaagaacggcgtcgtttagttccgcgctttgttctttaaccgagttcgaagaaagccagagtgaagtcgatgc |
47200755 |
T |
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| Q |
101 |
cagagacggtggatcgatgcttgttttggttgaagaaggaggtggtggtggatttgacaaaaatgacggtggagtttcaagattcggtgattcaaatcat |
200 |
Q |
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| T |
47200756 |
cagagacggtggttcgatgcttgttttggttgaagaaggaggtggtggtggatttgacaaaaacgacggtggagtttcaagattcggtgattcaaatcat |
47200855 |
T |
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| Q |
201 |
ggaaatgatagcaccgatttgtattaccgtacaatgattgaagcaaatcctggaaatccgctttttcttggtaattacgcaaagtacttaaaagaggtac |
300 |
Q |
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| T |
47200856 |
ggaaatgatagcaccgatttgtattaccgtacaatgattgaagcaaatcctggaaatccgctttttcttggtaattacgcaaagtacttaaaagaggtac |
47200955 |
T |
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| Q |
301 |
gttagaatttcaaagaacttcaaagtttgtttatgtcttaattactattttaggatgttaattttgtattaattgatgttaatttggttttttggaatga |
400 |
Q |
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| T |
47200956 |
gtt----------agaacttcaaagtttgtttatgtcttaattactattttaggatgttaattttgtattaattgatgttaatttggttttttggaatga |
47201045 |
T |
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| Q |
401 |
ttataggttcgtaaggactatgtgaaagcggaagaatattgtggaagagcgatt |
454 |
Q |
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| T |
47201046 |
ttataggttcgtaaggactatgtgaaagcggaagaatattgtggaagagcgatt |
47201099 |
T |
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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 20426208 - 20426289
Alignment:
| Q |
4 |
gaaccggaactttcggtgctcgttcaagaacggcgtcatttagttccgcgctttgttctttaaccgagttggaagaaagcca |
85 |
Q |
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| T |
20426208 |
gaaccggaactttcggtgctcgttccagaacggcgtcgtttggttccgcgctttgttctttaacagagttggaagaaagcca |
20426289 |
T |
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