View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_33 (Length: 440)

Name: NF15182_low_33
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_33
NF15182_low_33
[»] chr1 (6 HSPs)
chr1 (37-427)||(33286698-33287088)
chr1 (287-402)||(33141043-33141158)
chr1 (287-402)||(33159663-33159778)
chr1 (287-402)||(33182507-33182622)
chr1 (106-177)||(33141318-33141389)
chr1 (104-196)||(33182746-33182838)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 37 - 427
Target Start/End: Original strand, 33286698 - 33287088
Alignment:
Q  37 aatctaaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga 136  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286698 aatctcaaaagtgaaatctttaggttaaaataacattttattattcatacagcaaaataagcaaatttaacaaatagccttattctagttgcattcatga 33286797  T
Q  137 tctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaactgaaactcagaagaaaatgcaacaattgaacataacaca 236  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286798 tcttactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaactgaaactcagaagaaaatgcaacaattgaacataacaca 33286897  T
Q  237 tagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaataaacacttccattctgcgacgacaatctg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33286898 tagcaacactccaatgctaatgctcaccattaataagtcttatcctcatcatggcaacacttgtaggtaataaacacttccattctgcgacgacaatctg 33286997  T
Q  337 gacactcaacaaaatctgggatttttccatcaactttatgaatctcaaggcgagagcaaagatgaaagaaaggagcaaccttcttatgatg 427  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  33286998 gacactcaacaaaatctgggatttttccagcaactttatgaatctcaaggtgagagcaaagatgaaaggaaggagcaaccttcttatgatg 33287088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33141158 - 33141043
Alignment:
Q  287 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 386  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||||||||||||||| | ||||||||| ||||| ||| |||| ||| |||||||||||    
T  33141158 atggcaacacttgtagctaataaacacttccattgtgcggtgacaatctggacactcgataaaatctggaattttcccagcaacattaggaatctcaagg 33141059  T
Q  387 cgagagcaaagatgaa 402  Q
     ||||||||| |||||    
T  33141058 tgagagcaaatatgaa 33141043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33159778 - 33159663
Alignment:
Q  287 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 386  Q
    |||||| ||||||||| | ||| ||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||||||||| ||| |||||||||||    
T  33159778 atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg 33159679  T
Q  387 cgagagcaaagatgaa 402  Q
     ||||||||| |||||    
T  33159678 tgagagcaaatatgaa 33159663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 402
Target Start/End: Complemental strand, 33182622 - 33182507
Alignment:
Q  287 atggcaacacttgtaggtaataaacacttccattctgcgacgacaatctggacactcaacaaaatctgggatttttccatcaactttatgaatctcaagg 386  Q
    |||||| ||||||||| | ||| ||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||||||||| ||| |||||||||||    
T  33182622 atggcagcacttgtagctgatatacacttccattgtgcggtgacaatctggacacttaataaagtctgggatttttccatcaacattaggaatctcaagg 33182523  T
Q  387 cgagagcaaagatgaa 402  Q
     ||||||||| |||||    
T  33182522 tgagagcaaatatgaa 33182507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 33141389 - 33141318
Alignment:
Q  106 acaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacat 177  Q
    ||||||||||||||||||||||||||  |||||| |||||||||||| |||||||| |||||||||||||||    
T  33141389 acaaatagccttattctagttgcatttgtgatctcactgtgatcaacgataatgcaagactcatggctacat 33141318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 33182838 - 33182746
Alignment:
Q  104 taacaaatagccttattctagttgcattcatgatctaactgtgatcaacaataatgcaggactcatggctacatcccataaggggtacataaa 196  Q
    ||||||| |||||| || ||||||||||| |||||| ||| ||||||||||||||||| ||||| |||||||||| ||  |||||||||||||    
T  33182838 taacaaacagccttcttttagttgcattcgtgatcttactatgatcaacaataatgcacgactcttggctacatcacacgaggggtacataaa 33182746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University