View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_37 (Length: 411)
Name: NF15182_low_37
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 107 - 394
Target Start/End: Original strand, 32551311 - 32551598
Alignment:
| Q |
107 |
caatttcagaaaggctttaaaaatgtcaatgttttctgaaagaggtaaggggtttgggggtctgaaattttattttattttccaaagataatttcgatga |
206 |
Q |
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| T |
32551311 |
caatttcagaaaggctttaaaaatgtcaatgttttctgaaagaggtaaggggtttgggggtctgaaattttattttattttcctaagataatttcgatga |
32551410 |
T |
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| Q |
207 |
acaggtagagaggtatattggtgcgactgttaccatggtctgatgccatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaa |
306 |
Q |
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| T |
32551411 |
acaggtagagaggtatattggtgtgactgttacaatggtctgatgcgatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaa |
32551510 |
T |
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| Q |
307 |
ttgcagtgtgatgcaattgcggttgcatgaacacagcgaacagcgtgatttgttgtacagacgtcttgaaaacattctttgaagtaca |
394 |
Q |
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| T |
32551511 |
ttgcagtgtgatgcaattgcggttgcatgaacacagcgaacaacgtaatttgttgcacggacgtcttgaaaacgttctttgaagtaca |
32551598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 244 - 328
Target Start/End: Complemental strand, 40577404 - 40577320
Alignment:
| Q |
244 |
gtctgatgccatagctggtgtcgttgcaaaagttcatacccgtgattgaagatcagacctcaattgcagtgtgatgcaattgcgg |
328 |
Q |
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| T |
40577404 |
gtctgatgcggtagctagtgccgttgcgaaagttcgtacacgtgattgaagatcagaccgcaattgcagtgtgatgcaattgcgg |
40577320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 32551229 - 32551279
Alignment:
| Q |
27 |
aatattttatgtgtactcttgctttaatttgtatttttttcctactttttt |
77 |
Q |
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| T |
32551229 |
aatattttatgtgtgttcttactttaatttgtatttttttactactttttt |
32551279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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