View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_40 (Length: 392)
Name: NF15182_low_40
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 672691 - 673060
Alignment:
| Q |
18 |
ggaatgacagttatatgaaggattgggatagtgatagagggcattcatcacttttcagttacaaccttagaaggtttgggcaaagaaattcctttctctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
672691 |
ggaatgacagttatatgaaggattgggatagtgatagagggcattcatcacttttcagttacaaccttagaaggtttgggcagagaaattcctttctctc |
672790 |
T |
|
| Q |
118 |
aaatgaatatatcattatgcttgaaagaaatgaggtttaggttcagatacgtattacacccgataggagataaaaatgacagcaaaagcttttttaagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
672791 |
aaatgaatatatcattatgcttgaaagaaatgaggtttaggttcagatacgtattacacccgataggagataaaaatgacagtaaaagcttttttaagtt |
672890 |
T |
|
| Q |
218 |
ttaaagatgtgaagtatataataaaggtaatgtagttcctaatttctatttttatggactaacat-----gattagatttgtctaatatannnnnnnnnn |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
672891 |
ttaaagatgtgaagtatataataaaggtaatgtagttcctaatttctatttttatggactaacatgattagattagatttgtctaatatatgtgtgtgtg |
672990 |
T |
|
| Q |
313 |
nnnnnnntaaaaggctaaggaattaggcaaaataattaggaaattgtgactgtgtgtgtgcgcatctgtg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
672991 |
tgtgtgttaaaaggctaaggaattaggcaaaataattaggaaattgtgactgtgtgtgtgcgcatttgtg |
673060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 4245161 - 4245064
Alignment:
| Q |
20 |
aatgacagttatatgaaggattgggatagtgatagagg-gcattcatcacttttcagttacaaccttagaaggtttgggcaaagaaattcctttctct |
116 |
Q |
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| T |
4245161 |
aatgacagttatataaaggatagggatagcaatagaggaggattcatcactgttcagttacgacctaagaaggtttgggcagagaaagtcctttctct |
4245064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 21265329 - 21265044
Alignment:
| Q |
18 |
ggaatgacagttatatgaaggattgggatagtgatagagggcattcatcacttttcagttacaaccttagaaggtttgggcaaagaaattcctttctctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21265329 |
ggaatgacagttatatgaaggattgggatagtgatagagggcattcatcacttttcagttacaaccttagaaggtttgggcagagaaattcctttctctc |
21265230 |
T |
|
| Q |
118 |
aaatgaatatatca-ttatgcttgaaagaaatgaggtttaggttcagatacgtattacacccgataggagataaaaatgacagcaaaagcttttttaagt |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
21265229 |
aaatgaatatatcaattatgcttgaaagaaatgaggtttaggttcagatacgtattacacacgataggagataaaaatgacagtaaaagcttttttaagt |
21265130 |
T |
|
| Q |
217 |
tttaaagatgtgaagtatataataaaggtaatgtagttcctaatttctatttttatggactaacatgattagatttgtctaatata |
302 |
Q |
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| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21265129 |
tataaatatgtgaagtatataataaaggtaacgtagttcctaatttctatttttatggactaacatgattagatttgtctaatata |
21265044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 382
Target Start/End: Complemental strand, 21265020 - 21264958
Alignment:
| Q |
320 |
taaaaggctaaggaattaggcaaaataattaggaaattgtgactgtgtgtgtgcgcatctgtg |
382 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
21265020 |
taaaaggctaaggaattacgcaaaataattaggaaattgtgtctgtgtgtgtgtgcatttgtg |
21264958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 18635894 - 18635855
Alignment:
| Q |
18 |
ggaatgacagttatatgaaggattgggatagtgatagagg |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18635894 |
ggaatgacagttatatgaaggattgggatagtgatagagg |
18635855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 25426313 - 25426409
Alignment:
| Q |
18 |
ggaatgacagttatatgaaggattgggatagtgatagaggg-cattcatcacttttcagttacaaccttagaaggtttgggcaaagaaattcctttc |
113 |
Q |
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|||||||||||||||||||| || ||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||| | ||| ||||||| |
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| T |
25426313 |
ggaatgacagttatatgaagaatagggatagcaatagaggggcattcatcacttttcagttacaggcttagaaggtttgagcagataaagtcctttc |
25426409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 3669330 - 3669279
Alignment:
| Q |
65 |
tcacttttcagttacaaccttagaaggtttgggcaaagaaattcctttctct |
116 |
Q |
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|||| ||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
3669330 |
tcacattttagttacgaccttagaaggtttgggcagagaaattcctttctct |
3669279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6937706 - 6937799
Alignment:
| Q |
18 |
ggaatgacagttatatgaaggattgggatagtgataga-gggcattcatcacttttcagttacaaccttagaaggtttgggcaaagaaattcct |
110 |
Q |
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|||||| ||||||||||||||| ||||||| ||||| |||||||||| |||| |||||||| |||||||| | | |||||| ||||| |||| |
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| T |
6937706 |
ggaatgccagttatatgaaggaccgggatagcaatagaggggcattcattacttctcagttacgaccttagaggatctgggcagagaaagtcct |
6937799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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