View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_46 (Length: 372)

Name: NF15182_low_46
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_46
NF15182_low_46
[»] chr1 (2 HSPs)
chr1 (1-331)||(52764837-52765163)
chr1 (231-292)||(37185036-37185096)
[»] chr8 (1 HSPs)
chr8 (206-281)||(16340721-16340797)
[»] chr3 (1 HSPs)
chr3 (228-286)||(38700716-38700775)
[»] chr5 (1 HSPs)
chr5 (232-285)||(7628071-7628125)
[»] chr6 (1 HSPs)
chr6 (175-212)||(12733388-12733425)
[»] chr4 (3 HSPs)
chr4 (227-286)||(18324154-18324214)
chr4 (227-286)||(18372317-18372377)
chr4 (180-283)||(45061641-45061745)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 52764837 - 52765163
Alignment:
Q  1 ttggatcattctagcgtcctatcatccatcaaatgatatgctctctgcctctctctactacttgcgtagaattctgtcaggtcttacctagtggtagagc 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  52764837 ttggatcattctagcgtcctatcctccatcaaatgatatgctctct--------ctactacttgcgtagaattatgtcaggtcttacctagtggtggagc 52764928  T
Q  101 cacactagggctcaggtggaccccaagcaaaaaataatannnnnnnataggaaaaatacgaagaaaagttatttacttttaaataaaattaccatgtggt 200  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  52764929 cacactagggctcaggtggaccccaagcaaaaaataatatttttttataggaaaaatacgaaaaaaagttatttacttttaaataaaattaccatgtggt 52765028  T
Q  201 caacccttttctccatttcgaaacgccttattatcacactttcaaatcactcgaaatgtgtagataatattttaaatttttaaggtgtgtaa----nnnn 296  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||            
T  52765029 caacccttttctccatttcaaaacgccttattatcacactttcaaatcactcgaaatgtatagataatattttaaatttttaaggtgtgtaatttttttt 52765128  T
Q  297 nnnatggtcaactttatgcttattaaaacatgaat 331  Q
       ||||||||||||||||||||||||||||||||    
T  52765129 tttatggtcaactttatgcttattaaaacatgaat 52765163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 37185036 - 37185096
Alignment:
Q  231 ttatcacactttcaaatcactcgaaatgtgtagataatattttaaatttttaaggtgtgtaa 292  Q
    |||||||| ||| || ||||| ||||| |||||||| ||||||||||||||||||| |||||    
T  37185036 ttatcacatttttaagtcact-gaaatatgtagatattattttaaatttttaaggtctgtaa 37185096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 16340721 - 16340797
Alignment:
Q  206 cttttctccatttcgaaacgccttattatcacactttcaaatcactcgaaatgtgtagataa-tattttaaattttt 281  Q
    |||||||||||||| | ||   ||| ||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  16340721 cttttctccatttcaatacattttactatcatactttcaaatcactcgaaatgtgtagataattatttttaattttt 16340797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 38700716 - 38700775
Alignment:
Q  228 ttattatcacactttcaaatcactcgaaatgtgtagataa-tattttaaatttttaaggt 286  Q
    |||||||||||||||||| ||| ||||||||| ||||||| |||||| ||||||||||||    
T  38700716 ttattatcacactttcaagtcattcgaaatgtatagataattattttgaatttttaaggt 38700775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 7628125 - 7628071
Alignment:
Q  232 tatcacactttcaaatcactcgaaatgtgtagataa-tattttaaatttttaagg 285  Q
    |||||||||||||| | ||||||||||||||||||| |||||| |||||||||||    
T  7628125 tatcacactttcaagtaactcgaaatgtgtagataattattttgaatttttaagg 7628071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 12733425 - 12733388
Alignment:
Q  175 acttttaaataaaattaccatgtggtcaacccttttct 212  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  12733425 acttttaaataatattaccatgtggtcaaccattttct 12733388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 18324214 - 18324154
Alignment:
Q  227 cttattatcacactttcaaatcactcgaaatgtgtagataa-tattttaaatttttaaggt 286  Q
    |||| |||||||||||||||||| | ||||||| | ||||| |||||| ||||||||||||    
T  18324214 cttactatcacactttcaaatcatttgaaatgtatggataattattttgaatttttaaggt 18324154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 18372317 - 18372377
Alignment:
Q  227 cttattatcacactttcaaatcactcgaaatgtgtagataa-tattttaaatttttaaggt 286  Q
    |||| |||||||||||||||||| | ||||||| | ||||| |||||| ||||||||||||    
T  18372317 cttactatcacactttcaaatcatttgaaatgtatggataattattttgaatttttaaggt 18372377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 45061641 - 45061745
Alignment:
Q  180 taaataaaattaccatgtggtcaacccttttctccatttcgaaacgccttattatcacactttcaaatcactcgaaatgtgtagataa-tattttaaatt 278  Q
    |||||||||||| | ||||  | ||||||||||||||  |   |||| |||| | || |||||||| ||||||||||| |||| |||| |||||||||||    
T  45061641 taaataaaattatcttgtgtcccacccttttctccatcccagtacgcgttataaacatactttcaagtcactcgaaatatgtaaataattattttaaatt 45061740  T
Q  279 tttaa 283  Q
    |||||    
T  45061741 tttaa 45061745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University