View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_low_48 (Length: 368)
Name: NF15182_low_48
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3567390 - 3567649
Alignment:
| Q |
1 |
tgcataaacaagcgtgttccaaaagagtgacaaagtaagttttgagtgttattaaaaagatcaattgcatcatctaattaatatt---atataagttatt |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
3567390 |
tgcataaacaagcgtgttccaaaagagtgacagagtaagttttgagtgttattaaaaaaatcaattgcatcatctaattaacatttttatataagttatt |
3567489 |
T |
|
| Q |
98 |
tttaactttgcatttatgataatgagaattaaccaatggttaataaagttaatttagtctttatcttttacaaaaacacgtgtttttaatcccctaaagg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3567490 |
tttaactttgcatttatgataatgagaattaaccaatggttaataaagttaatttagtctctatcttttacaaaaacatgtgtttttaatcccctaaagg |
3567589 |
T |
|
| Q |
198 |
aactaaaagcaatca-tttttataaaaggtaaatactaaaaatcatcaaaataattttaa |
256 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3567590 |
aactaaaagcaatcattttttataaaaggtaaatactaaaaatcgtcaaaataattttaa |
3567649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 33177651 - 33177684
Alignment:
| Q |
93 |
ttatttttaactttgcatttatgataatgagaat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
33177651 |
ttatttttaactttgcatttatgataataagaat |
33177684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 122
Target Start/End: Original strand, 35689969 - 35689998
Alignment:
| Q |
93 |
ttatttttaactttgcatttatgataatga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35689969 |
ttatttttaactttgcatttatgataatga |
35689998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University