View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_5 (Length: 672)

Name: NF15182_low_5
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_5
NF15182_low_5
[»] chr4 (12 HSPs)
chr4 (7-664)||(51303693-51304353)
chr4 (134-231)||(20291798-20291895)
chr4 (134-226)||(52840284-52840375)
chr4 (197-231)||(24100790-24100824)
chr4 (197-231)||(24100887-24100921)
chr4 (197-230)||(7277445-7277478)
chr4 (150-219)||(22048856-22048925)
chr4 (134-227)||(33508563-33508656)
chr4 (194-231)||(39993118-39993155)
chr4 (139-215)||(8678986-8679062)
chr4 (193-229)||(22720535-22720571)
chr4 (144-228)||(45848288-45848372)
[»] chr7 (10 HSPs)
chr7 (152-230)||(17801416-17801494)
chr7 (149-230)||(44615215-44615296)
chr7 (134-231)||(3485850-3485946)
chr7 (133-227)||(7307729-7307823)
chr7 (149-227)||(35436257-35436335)
chr7 (149-229)||(47612325-47612405)
chr7 (134-230)||(40992747-40992843)
chr7 (149-229)||(47612323-47612403)
chr7 (184-227)||(40752923-40752966)
chr7 (197-230)||(29229751-29229784)
[»] chr1 (18 HSPs)
chr1 (134-230)||(31032470-31032566)
chr1 (134-230)||(24419561-24419657)
chr1 (147-218)||(49805163-49805234)
chr1 (150-231)||(14231073-14231154)
chr1 (139-227)||(1226692-1226779)
chr1 (134-226)||(34890202-34890294)
chr1 (149-228)||(5346992-5347071)
chr1 (185-231)||(5368841-5368887)
chr1 (184-230)||(11900894-11900940)
chr1 (134-211)||(882942-883019)
chr1 (125-230)||(47084592-47084697)
chr1 (134-227)||(49166639-49166732)
chr1 (199-231)||(882953-882985)
chr1 (149-229)||(8900825-8900905)
chr1 (186-230)||(25395946-25395990)
chr1 (193-229)||(31635820-31635856)
chr1 (149-229)||(39940518-39940597)
chr1 (127-231)||(47154677-47154780)
[»] chr8 (11 HSPs)
chr8 (134-230)||(27988095-27988191)
chr8 (134-230)||(28045397-28045493)
chr8 (135-219)||(33072634-33072718)
chr8 (134-229)||(14113229-14113324)
chr8 (192-230)||(18147839-18147877)
chr8 (184-230)||(20694447-20694493)
chr8 (185-227)||(42158448-42158490)
chr8 (149-227)||(42662713-42662791)
chr8 (157-228)||(27976765-27976836)
chr8 (157-228)||(28034034-28034105)
chr8 (197-229)||(43932132-43932164)
[»] chr2 (11 HSPs)
chr2 (133-229)||(7645489-7645585)
chr2 (134-231)||(472439-472536)
chr2 (184-227)||(9113986-9114029)
chr2 (607-664)||(37714477-37714534)
chr2 (134-230)||(29168528-29168624)
chr2 (149-227)||(4860270-4860347)
chr2 (618-664)||(13716718-13716764)
chr2 (134-227)||(33956317-33956410)
chr2 (199-231)||(644111-644143)
chr2 (134-178)||(27279503-27279547)
chr2 (134-178)||(41221709-41221753)
[»] chr5 (13 HSPs)
chr5 (149-227)||(1249138-1249216)
chr5 (134-230)||(34445289-34445385)
chr5 (139-230)||(22398066-22398157)
chr5 (146-226)||(12399284-12399364)
chr5 (198-230)||(28351024-28351056)
chr5 (134-230)||(35463969-35464064)
chr5 (149-227)||(5865872-5865950)
chr5 (184-230)||(7065651-7065697)
chr5 (198-227)||(28499813-28499842)
chr5 (138-227)||(32741332-32741421)
chr5 (199-227)||(12676144-12676172)
chr5 (199-231)||(37514242-37514274)
chr5 (139-231)||(43221582-43221674)
[»] chr3 (9 HSPs)
chr3 (149-231)||(55121205-55121287)
chr3 (134-231)||(28732486-28732583)
chr3 (149-224)||(31836445-31836520)
chr3 (196-231)||(21150169-21150204)
chr3 (149-227)||(18093809-18093887)
chr3 (137-187)||(21150161-21150211)
chr3 (124-181)||(26601969-26602026)
chr3 (194-227)||(50561133-50561166)
chr3 (139-227)||(29595840-29595927)
[»] scaffold0003 (1 HSPs)
scaffold0003 (134-215)||(320714-320795)
[»] scaffold0777 (1 HSPs)
scaffold0777 (135-227)||(4729-4821)
[»] chr6 (7 HSPs)
chr6 (615-664)||(28867239-28867288)
chr6 (176-230)||(690952-691006)
chr6 (164-229)||(33123040-33123105)
chr6 (149-229)||(862851-862931)
chr6 (199-231)||(1158276-1158308)
chr6 (199-231)||(2271206-2271238)
chr6 (193-229)||(29938690-29938726)


Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 7 - 664
Target Start/End: Original strand, 51303693 - 51304353
Alignment:
Q  7 tacaaaaatgtctcataaggtgaaaaatgacgagcattctcaatgaagagtcatttactgaatatgaattttaacctattaaggaagaaaatattggtac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51303693 tacaaaaatgtctcataaggtgaaaaatgacgagcattctcaatgaagagtcatttactgaatatgaattttaacctattaaggaagaaaatattggtac 51303792  T
Q  107 cattactactacttttggttacattattaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacatta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51303793 cattactactacttttggttacattattaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacatta 51303892  T
Q  207 gttattcaatgaatctaaaaagttannnnnnnnat---tataaatatgaccggagagaatattagttatcatcatatatacaaagg-ctctcactcttca 302  Q
    |||||||||||||||||||   ||          |   |||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  51303893 gttattcaatgaatctaaattttttttttttttttatttataaatatgaccggagagaatattagttatcatcacatatacaaagaactctcactcttca 51303992  T
Q  303 ataataaatgtggccgaaaattaaaataagaaagaaaataggtaagagaaggttgaaccatcatattcatatatactcccactcttcgtgtaatgatata 402  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  51303993 ataataaatatgtccgaaaattaaaataagaaagaaaataggtaagagaaggttgaaccatcatattcatatatacttccactcttcgtgtagtgatata 51304092  T
Q  403 aagttattagtgagattcatttagtggttttgtttagagttgttgagtttgagttattgagtcactaatatgtactttcatttaaaattatacataaatt 502  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51304093 aagttattagtgagattcatttagtggttttgtttagagatgttgaatttgagttattgagtcactaatatgcactttcatttaaaattatacataaatt 51304192  T
Q  503 ataagtgatatgagacttattaaaagctctttaatttactaagctctaaaatgtatttaggctttgggagatgatagatatagtgataaaatttatcnnn 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        
T  51304193 ataagtgatatgagacttattaaaagctctttaatttactaagctctaaaatgtatttaggctttgggagat-atagatatagtgataaaatttattaaa 51304291  T
Q  603 nnnnttttaaggcaatgtatttgctaacacattttcttaattgcatactattatctcctttg 664  Q
        ||||||| ||||||||||||||||| ||||| |||||||||  | |||||||||||||    
T  51304292 ttttttttaagacaatgtatttgctaacatatttttttaattgcacgccattatctcctttg 51304353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 20291798 - 20291895
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||| | || |||||| ||  ||||||||||||| ||||||  | ||||| |  |||| ||||||||||||||||||| ||||||||||||||    
T  20291798 taagcaaaaaacaactttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatctaaaaagtta 20291895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 52840284 - 52840375
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaa 226  Q
    ||||||||| |||| |||||| || |||||||||| ||| |||||||   ||||||||||||  ||||||||| ||||| |||||||||||||    
T  52840284 taagcaaaaaataattttttaagtacattaaataattaatgtatctaacatataaatgtgac-cgatacattaattatttaatgaatctaaaa 52840375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 24100824 - 24100790
Alignment:
Q  197 agatacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||||| ||||||||||||||||||||||||    
T  24100824 agatacattaattattcaatgaatctaaaaagtta 24100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 24100887 - 24100921
Alignment:
Q  197 agatacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||||| ||||||||||||||||||||||||    
T  24100887 agatacattaattattcaatgaatctaaaaagtta 24100921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 7277478 - 7277445
Alignment:
Q  197 agatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||||||||||||||||| ||||||||||    
T  7277478 agatacattagttattcaatgaacctaaaaagtt 7277445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 22048925 - 22048856
Alignment:
Q  150 ttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaa 219  Q
    ||||||||||||| |||| |||| |||||| || ||| |||||||  | |||||||| ||||||||||||    
T  22048925 ttttaggttcattgaatagctaatgtatctggtgtattaatgtgatcaaatacattaattattcaatgaa 22048856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 33508656 - 33508563
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||| || || |||| |||||| ||||||||| |||| | ||| ||| |||| || | || |||||||||||||||| | |||||||    
T  33508656 taagcaaaacacaacttgttagattcattgaataactaatgtatatggttcatacatgtaaccaaatccattagttattcaatgtacctaaaaa 33508563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 39993118 - 39993155
Alignment:
Q  194 actagatacattagttattcaatgaatctaaaaagtta 231  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  39993118 actaaatacattaattattcaatgaatctaaaaagtta 39993155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 8679062 - 8678986
Alignment:
Q  139 aaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaa 215  Q
    |||| |||| ||||||||| |||| |||| |||| |||||||   ||||||||||||  ||||||||| ||||||||    
T  8679062 aaaaaataattttttaggtacattgaatacctaatgtatctaacatataaatgtgaccggatacattaattattcaa 8678986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 22720571 - 22720535
Alignment:
Q  193 gactagatacattagttattcaatgaatctaaaaagt 229  Q
    |||||||||||||| |||||||||| |||||||||||    
T  22720571 gactagatacattaattattcaatgtatctaaaaagt 22720535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 45848372 - 45848288
Alignment:
Q  144 ataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaag 228  Q
    |||| ||| ||| ||||||  |||||||| |||| |  ||| |||||| ||  |||||||||||||||||||| |||||||||||    
T  45848372 ataactttatagattcattggataactaatgtatgtgatttgtaaatgcgatcagatacattagttattcaataaatctaaaaag 45848288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 152 - 230
Target Start/End: Original strand, 17801416 - 17801494
Alignment:
Q  152 ttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  17801416 ttaggttcatttaataactaatgtatctaatttataaatgttactagatacattaattattcaatgaatctaaaaagtt 17801494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 44615215 - 44615296
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    |||||| ||||| | ||||| ||| |||||| | ||||||||||||||| ||||||||||||||||||||| ||| ||||||    
T  44615215 tttttaagttcactgaataattaatgtatctggattataaatgtgactacatacattagttattcaatgaacctagaaagtt 44615296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 3485946 - 3485850
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||| || ||||||| |||||| |||| |||| |||| | || ||||||||| ||||||||| ||| |||||| ||||| |||||||||||    
T  3485946 taagcaaaacacaattttttagattcattgaatatctaatgtattttgtctataaatgtaactagatac-ttaattattctatgaacctaaaaagtta 3485850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 7307823 - 7307729
Alignment:
Q  133 ttaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||| ||||||| || |||||||||||||| ||| ||||| |||| |  || |||| ||||| || ||||||| ||||||||||||| |||||||    
T  7307823 ttaaccaaaacacaattttttaggttcattgaatgactaatgtatttgattcataattgtgattaaatacattcgttattcaatgaacctaaaaa 7307729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 35436335 - 35436257
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||||||||||||| ||||| | | ||||||||| |||||   |||| |||||||| |||||||||||||| |||||||    
T  35436335 tttttaggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacctaaaaa 35436257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 47612325 - 47612405
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgt-gactagatacattagttattcaatgaatctaaaaagt 229  Q
    |||||||||||||| ||||| ||| |||||| ||| |||||| | |||||||||||||| |||| ||||||| |||||||||    
T  47612325 tttttaggttcattgaataattaatgtatctcgtt-ataaatatagactagatacattacttatacaatgaacctaaaaagt 47612405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 40992747 - 40992843
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| |  ||||||||||| |||||||||| ||| |||  |   ||||||||||||| |||| ||||| |||||||||| || |||||||||    
T  40992747 taagcaaaaaagcaatttttaggtacattaaataattaatgtacatgacttataaatgtgaccagatgcattaattattcaatgtatttaaaaagtt 40992843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 47612403 - 47612323
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||||||||||  |||| ||| ||||||||| ||||  | | || |||||||||| |||||||||||| |||||||||    
T  47612403 tttttaggttcattgtataagtaatgtatctagtctatatttataacgagatacattaattattcaatgaacctaaaaagt 47612323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 40752923 - 40752966
Alignment:
Q  184 tataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||||| |||| ||||||| ||||||||||||||||||||||||    
T  40752923 tataaaagtgattagatacgttagttattcaatgaatctaaaaa 40752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 29229751 - 29229784
Alignment:
Q  197 agatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||||||||||||||||| ||||||||||    
T  29229751 agatacattagttattcaatgaacctaaaaagtt 29229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 31032566 - 31032470
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||||  || |||||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |||||  ||||||||||||||||    
T  31032566 taagcaaaactcaattttttaggttcattaaataactaatgtatttggtctataaatgtgactagatacattaattatttcatgaatctaaaaagtt 31032470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 24419657 - 24419561
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| | || ||||||||| |||| ||||| ||| ||||||   |||||| | ||||| |||||||||||| ||||||||||||||||||||    
T  24419657 taagcaaaaaacaactttttaggtacattgaataattaatgtatctgacttataattatgactggatacattagttcttcaatgaatctaaaaagtt 24419561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 49805163 - 49805234
Alignment:
Q  147 aatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatga 218  Q
    |||||||||||| |||||||| ||||  |||||||| ||||||||| |  ||||||||||||||||||||||    
T  49805163 aatttttaggttgattaaatacctaatatatctagtctataaatgtaataagatacattagttattcaatga 49805234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 14231154 - 14231073
Alignment:
Q  150 ttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||||| ||||||||| |||||| || ||||| ||||| || |||||||| | ||||||||||  ||||||||||    
T  14231154 ttttaggttcattgaataactaatgtatctggtctataattgtgattaaatacattaatcattcaatgaacgtaaaaagtta 14231073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 1226779 - 1226692
Alignment:
Q  139 aaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||| |||| |||||| ||||||| ||||||||| |||| | || ||||||| |||| | |||||||| |||||||| |||||||||||    
T  1226779 aaaaaataattttttaagttcattgaataactaatgtattt-gtctataaatatgaccaaatacattatttattcaacgaatctaaaaa 1226692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 34890202 - 34890294
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaa 226  Q
    ||||||||| | || ||||||| | |||| |||||||||  ||||||   ||||||||| ||  ||||||||| |||||||||||||||||||    
T  34890202 taagcaaaaaacaactttttagatacattgaataactaatatatctaacatataaatgtaaccggatacattaattattcaatgaatctaaaa 34890294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 5347071 - 5346992
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaag 228  Q
    ||||||||  |||| ||||| |||  |||||| | ||||||||||| | ||||||||| |||||||||| ||||||||||    
T  5347071 tttttaggaacattgaataattaatatatctaatatataaatgtgaatggatacattaattattcaatgtatctaaaaag 5346992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 5368841 - 5368887
Alignment:
Q  185 ataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||||||  ||||||||| |||||||||| |||||||||||||    
T  5368841 ataaatgtgaccggatacattaattattcaatgcatctaaaaagtta 5368887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 11900894 - 11900940
Alignment:
Q  184 tataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    |||||||||||| ||||| |||| |||||||||| ||||||||||||    
T  11900894 tataaatgtgaccagatatattaattattcaatgtatctaaaaagtt 11900940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 882942 - 883019
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttat 211  Q
    |||| |||| |||| |||||||||||||| ||||||||| |||| || | |||||||||||  | |||||||| ||||    
T  882942 taagtaaaatataactttttaggttcattgaataactaatgtatttaatatataaatgtgatcaaatacattaattat 883019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 230
Target Start/End: Complemental strand, 47084697 - 47084592
Alignment:
Q  125 ttacattattaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaa 224  Q
    |||||||  ||| |||||||||| |||||||||||||  ||||||||| |||| |  | ||||||| |||| | |||||||| |||||  || ||| |||    
T  47084697 ttacatttataaacaaaacataattttttaggttcatagaataactaatgtatttgatctataaatatgaccaaatacattaattatttgataaatttaa 47084598  T
Q  225 aaagtt 230  Q
    ||||||    
T  47084597 aaagtt 47084592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 49166732 - 49166639
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||| | || ||||||| | |||| ||||| ||| |||||||   ||||||||||||| ||||||||| ||||| |||| | |||||||    
T  49166732 taagcaaaaaacaactttttagttacattgaataattaatgtatctaacctataaatgtgactggatacattaattatttaatgtacctaaaaa 49166639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 882985 - 882953
Alignment:
Q  199 atacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||||||||||||| |||||||||||    
T  882985 atacattagttattcaatgaacctaaaaagtta 882953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 8900825 - 8900905
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||||| |||| ||||| ||| |||||||   ||||||||||||  ||||||||| |||||||||  | |||||||||    
T  8900825 tttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaatatacctaaaaagt 8900905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 25395990 - 25395946
Alignment:
Q  186 taaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||| ||| ||||||||||| |||||||||| ||||||||||||    
T  25395990 taaatatgattagatacattaattattcaatgtatctaaaaagtt 25395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 31635820 - 31635856
Alignment:
Q  193 gactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  31635820 gactagatatattagttattcaatgtatctaaaaagt 31635856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 39940518 - 39940597
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    |||||||||||||| ||||| | | |||| | ||||||| ||  ||||| |||||||| ||||| ||||||||||||||||    
T  39940518 tttttaggttcatttaataaatgatgtatatggtttatatata-gactacatacattatttattgaatgaatctaaaaagt 39940597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 47154780 - 47154677
Alignment:
Q  127 acattattaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaa 226  Q
    |||||| ||||||||| | || |||||||||||||| ||||| ||| |||||| |  |||| ||  |||| |||||| | |||||||||||||||  |||    
T  47154780 acattaataagcaaaaaacaactttttaggttcatttaataaataatgtatctggcctatatat-agactggatacagtggttattcaatgaatcataaa 47154682  T
Q  227 agtta 231  Q
    |||||    
T  47154681 agtta 47154677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 27988095 - 27988191
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| | || |||||| ||||||| ||||| ||| |||||| |||||||||| | |||| |||||||| |||||||||||||||||||||||    
T  27988095 taagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattattcaatgaatctaaaaagtt 27988191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 28045397 - 28045493
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| | || |||||| ||||||| ||||| ||| |||||| |||||||||| | |||| |||||||| |||||||||||||||||||||||    
T  28045397 taagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattattcaatgaatctaaaaagtt 28045493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 33072634 - 33072718
Alignment:
Q  135 aagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaa 219  Q
    |||||||| |||| |||||||||||||| ||||||||| ||   | || ||||||||| ||||||| ||||| ||||||||||||    
T  33072634 aagcaaaaaataactttttaggttcattgaataactaatgtgattggtctataaatgtcactagatgcattaattattcaatgaa 33072718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 14113229 - 14113324
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||||| |||| ||||||||| |||  ||||| ||| |||||||    |||||||||||   |||||||| |||||||||| |||||||||||    
T  14113229 taagcaaaaaataactttttaggtacatccaataattaatgtatctaacccataaatgtgaccgtatacattaattattcaatgtatctaaaaagt 14113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 18147877 - 18147839
Alignment:
Q  192 tgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  18147877 tgactggatacattagttattcaatgaacctaaaaagtt 18147839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 20694493 - 20694447
Alignment:
Q  184 tataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||||||| |||| |||| |||||||||| ||||||||||||    
T  20694493 tataaatgtgacttgataaattaattattcaatgtatctaaaaagtt 20694447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 42158448 - 42158490
Alignment:
Q  185 ataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||||||||||| ||||||||| |||||||||| |||||||||    
T  42158448 ataaatgtgactggatacattaattattcaatgtatctaaaaa 42158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 42662791 - 42662713
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||||||||||||  || |||||  || ||||||| |||  |||||||||| ||||||||| ||| ||||||    
T  42662791 tttttaggttcattaaataatcaatgtatcaggtctataaatttgatcagatacattaattattcaataaatttaaaaa 42662713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 27976765 - 27976836
Alignment:
Q  157 ttcattaaataactaacgtatctagtttataaatgt-gactagatacattagttattcaatgaatctaaaaag 228  Q
    |||||||||||| ||| | |||| || ||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  27976765 ttcattaaataattaatgcatctggtctataa-tgtagaccagatacattaattattcaatgaatctaaaaag 27976836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 28034034 - 28034105
Alignment:
Q  157 ttcattaaataactaacgtatctagtttataaatgt-gactagatacattagttattcaatgaatctaaaaag 228  Q
    |||||||||||| ||| | |||| || ||||| ||| ||| |||||||||| |||||||||||||||||||||    
T  28034034 ttcattaaataattaatgcatctggtctataa-tgtagaccagatacattaattattcaatgaatctaaaaag 28034105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 43932132 - 43932164
Alignment:
Q  197 agatacattagttattcaatgaatctaaaaagt 229  Q
    |||||||||| ||||||||||||||||||||||    
T  43932132 agatacattaattattcaatgaatctaaaaagt 43932164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 7645585 - 7645489
Alignment:
Q  133 ttaagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| | || || ||||||||  | |||||||| |||||  |||||||||||||||    
T  7645585 ttaagcaaaacataattttttaggttcattaaataactaatgtatttggtctacaaatgtgatcaaatacattaattatttcatgaatctaaaaagt 7645489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 472536 - 472439
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||| || |||||||||| ||| |||||||||  ||| | || ||||||| |||| | |||||||||||||||||| || |||||||||||    
T  472536 taagcaaaacacaattttttaggttaattgaataactaatatatttggtctataaatatgaccaaatacattagttattcaataaacctaaaaagtta 472439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 9113986 - 9114029
Alignment:
Q  184 tataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  9113986 tataaatgtgactagatacattaattattcaatgaatctaaaaa 9114029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 607 - 664
Target Start/End: Complemental strand, 37714534 - 37714477
Alignment:
Q  607 ttttaaggcaatgtatttgctaacacattttcttaattgcatactattatctcctttg 664  Q
    |||||||||| ||||||||||||||| ||| ||||||| || || |||||||||||||    
T  37714534 ttttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttg 37714477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 29168624 - 29168528
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| |||| ||||||  | |||||||||| ||| ||||||   ||||||||||||| ||||  |||||||||||  |||| ||||||||||    
T  29168624 taagcaaaaaataactttttaaatacattaaataattaatgtatcttacttataaatgtgaccagatgtattagttattcgttgaacctaaaaagtt 29168528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 4860347 - 4860270
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||| || ||||||| ||||| |||||| ||||||| ||  ||| |||||||| ||||||||||||||||| ||||    
T  4860347 tttttagatttattaaatgactaatgtatctggtttatatata-gaccagatacatcagttattcaatgaatctgaaaa 4860270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 664
Target Start/End: Original strand, 13716718 - 13716764
Alignment:
Q  618 tgtatttgctaacacattttcttaattgcatactattatctcctttg 664  Q
    ||||||||||||||| ||||||||||| || ||||||| ||||||||    
T  13716718 tgtatttgctaacaccttttcttaattacacactattacctcctttg 13716764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 33956410 - 33956317
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||| |||| |||||||||||| |  ||| ||||| ||| |||||||  |||||||| ||||  ||||||||| |||||||||| || ||||||    
T  33956410 taagaaaaaaataaatttttagatatattgaataattaatgtatctaacttataaatatgaccggatacattaattattcaatgtatataaaaa 33956317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 644111 - 644143
Alignment:
Q  199 atacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||||||||||||| |||||||||||    
T  644111 atacattagttattcaatgaacctaaaaagtta 644143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 27279503 - 27279547
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatc 178  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||    
T  27279503 taagcaaaaaataattttttaggttcattgaataactaatgtatc 27279547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 41221753 - 41221709
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatc 178  Q
    |||| |||| ||||||||||||||||||| ||||||||| |||||    
T  41221753 taagtaaaaaataaatttttaggttcattgaataactaatgtatc 41221709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 1249138 - 1249216
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||||||||||| |||| ||||||  ||||||||| |||| | |||||||||||||||||| ||||||||||    
T  1249138 tttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatctaaaaa 1249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 34445385 - 34445289
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    |||||||| || || ||||||| || ||| ||||||||| |||| | || | ||||||||||||||||| ||| |||||| ||||| ||||||||||    
T  34445385 taagcaaatcacaactttttagatttattgaataactaatgtatttggtctctaaatgtgactagataccttaattattccatgaacctaaaaagtt 34445289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 22398066 - 22398157
Alignment:
Q  139 aaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    |||| |||| ||||||| || ||| ||||| ||  |||| |||| ||||||| |||| | |||||||| |||||||||||||||||||||||    
T  22398066 aaaaaataactttttagatttattgaataattattgtatatagtctataaatatgaccaaatacattaattattcaatgaatctaaaaagtt 22398157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 12399284 - 12399364
Alignment:
Q  146 aaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaa 226  Q
    ||||| ||||||||| | || ||| ||  ||| |||| |||||||||||||||||| |||| ||||||||| |||||||||    
T  12399284 aaattgttaggttcactgaacaacaaatatatttagtctataaatgtgactagatatattaattattcaataaatctaaaa 12399364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 28351024 - 28351056
Alignment:
Q  198 gatacattagttattcaatgaatctaaaaagtt 230  Q
    |||||||||||||||||||||||||||||||||    
T  28351024 gatacattagttattcaatgaatctaaaaagtt 28351056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 35463969 - 35464064
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||||||| |||| |||||||||||||| ||||||||| |||||  || |||| || ||  |||||||||||| || |||| ||| ||||||||||    
T  35463969 taagcaaaaaataattttttaggttcattgaataactaatgtatccggtctatatatatg-ttagatacattagctactcaaagaacctaaaaagtt 35464064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 5865872 - 5865950
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||| |||| ||||||||| |||||||   ||||||||||||  |||| || | |||||||||||| |||||||    
T  5865872 tttttaggtacatttaataactaatgtatctaacatataaatgtgaccggatatatcaattattcaatgaacctaaaaa 5865950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 7065651 - 7065697
Alignment:
Q  184 tataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    |||||||||||  |||||||||| ||||||||||||| |||||||||    
T  7065651 tataaatgtgatcagatacattaattattcaatgaatttaaaaagtt 7065697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 28499842 - 28499813
Alignment:
Q  198 gatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||||||||||||||||||||||    
T  28499842 gatacattagttattcaatgaatctaaaaa 28499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 32741332 - 32741421
Alignment:
Q  138 caaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||| |||| ||||||| || |||||||||  || ||||  ||| |||||||||||| ||||||| || ||||| |||||| |||||||    
T  32741332 caaaaaataactttttagatttattaaataatcaatgtattgagtctataaatgtgaccagatacaataattatttaatgaacctaaaaa 32741421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 12676172 - 12676144
Alignment:
Q  199 atacattagttattcaatgaatctaaaaa 227  Q
    |||||||||||||||||||||||||||||    
T  12676172 atacattagttattcaatgaatctaaaaa 12676144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 37514242 - 37514274
Alignment:
Q  199 atacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||||||||||||||||||| ||||||||    
T  37514242 atacattagttattcaatgaatctgaaaagtta 37514274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 43221582 - 43221674
Alignment:
Q  139 aaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    |||| |||| ||||||| ||||||||||||  || |||||  || | |||||||||| | |||||||| || |||||| || |||||||||||    
T  43221582 aaaaaataactttttagattcattaaataatcaatgtatcgggtctgtaaatgtgaccacatacattaatttttcaataaacctaaaaagtta 43221674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 55121205 - 55121287
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||||||||| ||||||||| |||| | ||||||||||||||| | |||||||| ||||| ||| ||||||||||||||    
T  55121205 tttttaggttcattgaataactaatgtatttggtttataaatgtgaccaaatacattaattatttaataaatctaaaaagtta 55121287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 28732583 - 28732486
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||| | || ||||||| |||||| ||| ||||| | |||  || |||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  28732583 taagcaaaatagaactttttagattcattgaatgactaatgaatccggtctataaatgtgactaaatacattagttattcaatgaacctaaaatgtta 28732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 31836520 - 31836445
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaa 224  Q
    |||||||||||||| ||||| ||| |||| | || ||||||| |||||| |||||||| |||||||||||| ||||    
T  31836520 tttttaggttcattgaataattaatgtatttggtctataaatatgactaaatacattaattattcaatgaacctaa 31836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 21150204 - 21150169
Alignment:
Q  196 tagatacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21150204 tagatacattagttatttaatgaatctaaaaagtta 21150169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 149 - 227
Target Start/End: Complemental strand, 18093887 - 18093809
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||||||||| ||| ||||| ||| ||||||    |||||||||||| |||||||||| |||||||||| || ||||||    
T  18093887 tttttaggtttattgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaatgtatttaaaaa 18093809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 21150161 - 21150211
Alignment:
Q  137 gcaaaacataaatttttaggttcattaaataactaacgtatctagtttata 187  Q
    |||||| |||| ||||||| |||||||||||||||| ||||||| ||||||    
T  21150161 gcaaaaaataactttttagattcattaaataactaatgtatctaatttata 21150211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 26601969 - 26602026
Alignment:
Q  124 gttacattattaagcaaaacataaatttttaggttcattaaataactaacgtatctag 181  Q
    ||||||||  ||||||||| | || |||||||||||||| ||||| ||||||||||||    
T  26601969 gttacatttataagcaaaaaacaactttttaggttcattgaataattaacgtatctag 26602026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 50561133 - 50561166
Alignment:
Q  194 actagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||||||||| ||||||||||||||||||    
T  50561133 actagatacattagtcattcaatgaatctaaaaa 50561166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 29595840 - 29595927
Alignment:
Q  139 aaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    ||||||||| ||||||||||||| || ||||||  |||| |  | |||||||||||||||||| |||| |||||  |||||| ||||||    
T  29595840 aaaacataattttttaggttcatgaa-taactagtgtatttgatctataaatgtgactagatatattaattatttcatgaatttaaaaa 29595927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 320795 - 320714
Alignment:
Q  134 taagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaa 215  Q
    ||||||||||| || ||||||| ||||||||||||||||  ||||| ||||||||||  || ||||||||||||||||||||    
T  320795 taagcaaaacacaactttttagattcattaaataactaatatatctggtttataaataggattagatacattagttattcaa 320714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 227
Target Start/End: Original strand, 4729 - 4821
Alignment:
Q  135 aagcaaaacataaatttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaa 227  Q
    |||||||||| || ||||||  |||||| ||||||||| |||| |  | ||||||||||||||||||||||| |||||| || || |||||||    
T  4729 aagcaaaacacaactttttaaattcattgaataactaatgtatttgatatataaatgtgactagatacattaattattccataaacctaaaaa 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 664
Target Start/End: Complemental strand, 28867288 - 28867239
Alignment:
Q  615 caatgtatttgctaacacattttcttaattgcatactattatctcctttg 664  Q
    ||||||||||||||| |||||| ||||||| |||||||||| ||||||||    
T  28867288 caatgtatttgctaaaacatttccttaattacatactattacctcctttg 28867239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 690952 - 691006
Alignment:
Q  176 atctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagtt 230  Q
    ||||| ||||||||||||| || | | |||||||||||||||||| |||||||||    
T  690952 atctaatttataaatgtgattatacatattagttattcaatgaatttaaaaagtt 691006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33123105 - 33123040
Alignment:
Q  164 aataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||| ||||||||| ||| ||||||   |||||||||||||| |||||||||| || ||||||||    
T  33123105 aataattaacgtatcaagtctataaaaaagactagatacattaattattcaatgtatttaaaaagt 33123040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 862931 - 862851
Alignment:
Q  149 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatctaaaaagt 229  Q
    ||||||| | |||| ||||| ||| |||||||   ||||||||||||| ||||||  |||||||||||| | |||||||||    
T  862931 tttttagatacattgaataattaatgtatctaacctataaatgtgactggatacaccagttattcaatgtacctaaaaagt 862851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Complemental strand, 1158308 - 1158276
Alignment:
Q  199 atacattagttattcaatgaatctaaaaagtta 231  Q
    |||||||| ||||||||||||||||||||||||    
T  1158308 atacattaattattcaatgaatctaaaaagtta 1158276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 2271206 - 2271238
Alignment:
Q  199 atacattagttattcaatgaatctaaaaagtta 231  Q
    ||||||||||| |||||||||||||||||||||    
T  2271206 atacattagttgttcaatgaatctaaaaagtta 2271238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 29938690 - 29938726
Alignment:
Q  193 gactagatacattagttattcaatgaatctaaaaagt 229  Q
    |||||||||||||| |||||||||| |||||||||||    
T  29938690 gactagatacattaattattcaatgtatctaaaaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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