View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_51 (Length: 362)
Name: NF15182_low_51
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 39745620 - 39745975
Alignment:
| Q |
1 |
taatcttcaggtatggttgaccgtttgcagacacgacttgttaccgcacataacccatattcttttattaattgagctgcattgggttttgaagtctaag |
100 |
Q |
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| T |
39745620 |
taatcttcaggtatggttgaccgagtgcagagacgacttgtggccgcacacaacccatattcttatattaattgagctgcattgggttttgaagtctaag |
39745719 |
T |
|
| Q |
101 |
taacataaccaatttgtttaaatcattatattcatttactaatatatg----tataatatcatcccaattaatttacagggctgtatagatacagagttg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39745720 |
taacataaccaatttgtttaaatcattatattcatttactaatatatgtatgtataatatcatcccaattaatttacagggctgtatagatacagagttg |
39745819 |
T |
|
| Q |
197 |
gtgatgtacttcaagtggttgctttccacaacaaagccccacaatttcgattcatatgtagaagaaacgtagtaataagcattgacagtgaaaagacaaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39745820 |
gtgatgtacttcaagtggttgctttccacaacaaagccccacaatttcgattcatatgtagaagaaacgtagtaataagcattgacagtgaaaagacaaa |
39745919 |
T |
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| Q |
297 |
tgaagaggatttacatagaagtgcgacaatggccaaaaagttattagaaccctatg |
352 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
39745920 |
tgaagaggatttacatagaagtgtgacaatgtccaaaaagttattagaaccctatg |
39745975 |
T |
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