View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_55 (Length: 337)
Name: NF15182_low_55
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 39166811 - 39166485
Alignment:
| Q |
1 |
ttgtttcggttgctaaaataaaccacataccgcgcggttgagtcaaaaaatgactcaaatacatctgaatcaaaaaatgactcaacatatacacgccttg |
100 |
Q |
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| T |
39166811 |
ttgtttcggttgctaaaataaaccacataccgcgcggttgagtcaaaaaatgactcaaatacatctgaatcaaaaaatgactcaacatatacacgccttg |
39166712 |
T |
|
| Q |
101 |
tttttgttccaagtgatagaaatgaatactaatctctaatctacgtatgaaattttgtaacgagaaatgatcaatctttgacgtgataaaactcaccaca |
200 |
Q |
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| T |
39166711 |
tttttgttccaagtgatagaaatgaatactaatctctaatctacgaatgaaattttgtaacgagaaatgatcaatctttgacgtgataaaactcaccaca |
39166612 |
T |
|
| Q |
201 |
agcttccttcacggttgattacatcacggtatttgtcactctcattcccttttcaattgcattcattcattcatgattcacactatgcatttgacgtatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39166611 |
agcttccttcacggttgattacatcacggtatttgtcactctcattcccttttcaattgcattcattcattcatgattcacactatgcatttgacgtatt |
39166512 |
T |
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| Q |
301 |
gcattaaattgttttgtgtattccttt |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
39166511 |
gcattaaattgttttgtgtattccttt |
39166485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 41983744 - 41983705
Alignment:
| Q |
35 |
cggttgagtcaaaaaatgactcaaatacatctgaatcaaa |
74 |
Q |
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| T |
41983744 |
cggttgagtcaaaaaatgactcaaatacatctgaagcaaa |
41983705 |
T |
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