View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_57 (Length: 335)
Name: NF15182_low_57
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 34557368 - 34557550
Alignment:
| Q |
1 |
atgattgaacatatcttaaaaatgtcagcgtgagttatctcatgctgaaaaatgccgagagttaattcccgccgagttgaggaaatgagtaattttgaaa |
100 |
Q |
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| T |
34557368 |
atgattgaacagatcttaaaaatgtcggcgtgagttatc-ca---tgaaaaatgccgggaattaattcctgccgagttgagggaatgagtaattttgaaa |
34557463 |
T |
|
| Q |
101 |
ggaagaagatcaattttcgttacaatttgggcttacaaaactgacccacataaagcccataatccattttcaaaccaaattcttcaa |
187 |
Q |
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| T |
34557464 |
ggaagaagatcaattttcgttacaatttgggcttacaaaactaacccacataaagcccatgatccattttcacaccaaattcttcaa |
34557550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 214 - 321
Target Start/End: Original strand, 34557575 - 34557682
Alignment:
| Q |
214 |
gtattatccaaaatcattatcaggagcagaagcaaaaagaaaaagaagttacagcaacaa---tggtagctatggctatggcttctcttcagagttccat |
310 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34557575 |
gtattatccaaaatcattatcagaagcagaagcaaaaagaa---gaagttacagcaacaaaaatggtagctatggctatggcttctcttcagagttccat |
34557671 |
T |
|
| Q |
311 |
gacctcactct |
321 |
Q |
| |
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||||||||||| |
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| T |
34557672 |
gacctcactct |
34557682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33710619 - 33710566
Alignment:
| Q |
1 |
atgattgaacatatcttaaaaatgtcagcgtgagttatctcatgctgaaaaatg |
54 |
Q |
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| T |
33710619 |
atgattgaaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaatg |
33710566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 34273148 - 34273042
Alignment:
| Q |
16 |
ttaaaaatgtcagcgtgagttatctcatgctgaaaaatgccgag----agttaattcccgccgagttgaggaaatgagtaattttgaaaggaagaagatc |
111 |
Q |
| |
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|||||| ||||||||||||||| ||| |||||||||||||||| |||||| || ||| ||||| |||||||||| |||||| ||||| |||||| | |
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| T |
34273148 |
ttaaaagtgtcagcgtgagttaattcacgctgaaaaatgccgagcagaagttaactcacgctgagttaaggaaatgagcaattttaaaagggagaagagc |
34273049 |
T |
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| Q |
112 |
aattttc |
118 |
Q |
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||||||| |
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| T |
34273048 |
aattttc |
34273042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 559983 - 559941
Alignment:
| Q |
14 |
tcttaaaaatgtcagcgtgagttatctcatgctgaaaaatgcc |
56 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
559983 |
tcttaaaaatgtcagcgtgagttaactcacgctgaaaaatgcc |
559941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 33617691 - 33617649
Alignment:
| Q |
2 |
tgattgaacatatcttaaaaatgtcagcgtgagttatctcatg |
44 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
33617691 |
tgattgaaccgatcttaaaaatgtcagcgtgagttaactcatg |
33617649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 39126966 - 39127011
Alignment:
| Q |
14 |
tcttaaaaatgtcagcgtgagttatctcatgctgaaaaatgccgag |
59 |
Q |
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|||||||| ||||||||||||||| |||| ||||||||||| |||| |
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| T |
39126966 |
tcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgag |
39127011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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