View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_6 (Length: 653)

Name: NF15182_low_6
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_6
NF15182_low_6
[»] chr6 (10 HSPs)
chr6 (15-332)||(787539-787856)
chr6 (326-639)||(787179-787492)
chr6 (388-552)||(9664639-9664803)
chr6 (381-551)||(3074909-3075082)
chr6 (381-504)||(21146819-21146941)
chr6 (344-405)||(8655790-8655851)
chr6 (327-399)||(24249840-24249910)
chr6 (326-402)||(6825454-6825529)
chr6 (326-384)||(23343941-23343997)
chr6 (326-354)||(8837163-8837191)
[»] chr4 (4 HSPs)
chr4 (380-551)||(55849418-55849590)
chr4 (326-526)||(55851937-55852150)
chr4 (326-399)||(5440946-5441019)
chr4 (553-601)||(33722080-33722128)
[»] chr3 (10 HSPs)
chr3 (326-551)||(20868675-20868901)
chr3 (381-518)||(27462140-27462277)
chr3 (381-551)||(24595209-24595375)
chr3 (326-551)||(51306330-51306554)
chr3 (381-551)||(20871313-20871490)
chr3 (430-551)||(51308791-51308912)
chr3 (326-394)||(52737774-52737842)
chr3 (476-551)||(35610797-35610872)
chr3 (381-435)||(27462290-27462344)
chr3 (326-385)||(4602399-4602458)
[»] chr1 (7 HSPs)
chr1 (405-551)||(20225515-20225661)
chr1 (326-501)||(20226767-20226942)
chr1 (326-402)||(18705653-18705729)
chr1 (485-550)||(20226953-20227018)
chr1 (326-394)||(9908127-9908194)
chr1 (345-402)||(29849953-29850008)
chr1 (326-359)||(35270048-35270081)
[»] chr8 (15 HSPs)
chr8 (348-523)||(35416056-35416231)
chr8 (387-556)||(12062760-12062931)
chr8 (327-471)||(3788446-3788591)
chr8 (387-551)||(369263-369425)
chr8 (381-520)||(31909100-31909236)
chr8 (480-551)||(4676130-4676201)
chr8 (480-551)||(4678075-4678146)
chr8 (326-394)||(4676285-4676354)
chr8 (326-390)||(39327-39391)
chr8 (348-394)||(26174391-26174437)
chr8 (326-394)||(7277695-7277762)
chr8 (407-530)||(3785816-3785937)
chr8 (369-460)||(19472471-19472563)
chr8 (369-460)||(19543396-19543488)
chr8 (369-460)||(19589208-19589300)
[»] chr2 (2 HSPs)
chr2 (381-551)||(26608008-26608177)
chr2 (326-402)||(24038380-24038456)
[»] chr5 (8 HSPs)
chr5 (410-551)||(27172855-27172995)
chr5 (327-394)||(35309093-35309160)
chr5 (326-402)||(41951676-41951752)
chr5 (480-551)||(39040636-39040707)
chr5 (326-394)||(30518630-30518698)
chr5 (326-394)||(30558970-30559038)
chr5 (326-402)||(21254265-21254340)
chr5 (369-402)||(26873149-26873182)
[»] chr7 (4 HSPs)
chr7 (326-402)||(41830317-41830393)
chr7 (326-394)||(34510821-34510888)
chr7 (387-530)||(2577001-2577142)
chr7 (327-394)||(36647433-36647500)
[»] scaffold0001 (1 HSPs)
scaffold0001 (326-405)||(146666-146744)


Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 15 - 332
Target Start/End: Complemental strand, 787856 - 787539
Alignment:
Q  15 aaggcaaaatgggatagttggtatttttgtacagctcagaggctgagtcatgacatcttttgaaccttagaatgcaaatatccaaattatatccaaatcc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787856 aaggcaaaatgggatagttggtatttttgtacagctcagaggctgagtcatgacatcttttgaaccttagaatgcaaatatccaaattatatccaaatcc 787757  T
Q  115 ttaattaaaattttaaaatgaaaaggtaaacaacagacatactttagaaatgaattcaaatgattatgaaaaagaaattgccaaatcaagaaaagaagga 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787756 ttaattaaaattttaaaatgaaaaggtaaacaacagacatactttagaaatgaattcaaatgattatgaaaaagaaattgccaaatcaagaaaagaagga 787657  T
Q  215 atgaacaatcgatgcaaggaattcctcaatcacgagatcagaaaaacgaaattgaaataaggaaggaatcaagaacgtgacactgaatcggaatcagtga 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  787656 atgaacaatcgatgcaaggaattcctcaatcacgagatcagaaaaacgaaattgaaataagaaaggaatcaagaacgtgacactgaatcggaatcagtga 787557  T
Q  315 aaaaaggaagggaaaatg 332  Q
    |||||||||| |||||||    
T  787556 aaaaaggaagagaaaatg 787539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 326 - 639
Target Start/End: Complemental strand, 787492 - 787179
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttgga 425  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  787492 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagtttgga 787393  T
Q  426 aaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcct 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||    
T  787392 aaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcggtacaaatgagtcaatcatatgacttatatagtaactaaactagtgtcct 787293  T
Q  526 aactacctatatcattattcttaatatttactgtttcaattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttat 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  787292 aactacctatatcattattcttaatatttactgtttcaattaatattccactttctaagatgttattgtgtttcatttcataaatttattggtagtttat 787193  T
Q  626 tacattgttgttta 639  Q
    ||||||||||||||    
T  787192 tacattgttgttta 787179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 388 - 552
Target Start/End: Original strand, 9664639 - 9664803
Alignment:
Q  388 aaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagt 487  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| ||||||  ||||||||||||    
T  9664639 aaacatggcatccatggatatagagagaaaagcttgaaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtacaaatgagt 9664738  T
Q  488 caaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaatat 552  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||||    
T  9664739 caaccatgtgacttatatagtaactaaactagtgtcctaattaactatatcatcattcttaatat 9664803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 381 - 551
Target Start/End: Complemental strand, 3075082 - 3074909
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtatt-gatgatacttgaaatgatacaagaatgagaaagatcagtac 479  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||  ||||||   |||    
T  3075082 tgttagaaaacatggcatccatggatatagagagaaaagcttggaaaactattgtatttgatgatagttgaaatgatataagaatggaaaagatagatac 3074983  T
Q  480 aaatgagtcaaccatgtaacttatata--gtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||| ||||||||| | |||||||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  3074982 aaatgagacaaccatgtgatttatatatagtaactaaactagtgtcctaactaactatatcattattcttaata 3074909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 381 - 504
Target Start/End: Original strand, 21146819 - 21146941
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaag-cttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtac 479  Q
    ||||| ||||||||||||||||  | ||||||||||||  ||| ||||| |||||||||||  ||| |||||||||||||||||||| |||||   ||||    
T  21146819 tgttaagaaacatgtcatccatgaaaatagagagaaaaaacttagaaaattattgtattgaaaatagttgaaatgatacaagaatga-aaagagaggtac 21146917  T
Q  480 aaatgagtcaaccatgtaacttata 504  Q
    ||||||||||| ||||| |||||||    
T  21146918 aaatgagtcaa-catgtgacttata 21146941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 405
Target Start/End: Original strand, 8655790 - 8655851
Alignment:
Q  344 atccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccataga 405  Q
    |||||||||||||| ||||| ||  |||||||||||||||||||||||||| ||||||||||    
T  8655790 atccttcaaggtgggtaccagataagctctgataccatgttaggaaacatggcatccataga 8655851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 24249910 - 24249840
Alignment:
Q  327 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatc 399  Q
    |||||||||| ||||||  |||| |||||||||| || ||| |||||||||||||||||||||||||| ||||    
T  24249910 aaaatgcagcagaaaat--ccttaaaggtggatatcagattagctctgataccatgttaggaaacatggcatc 24249840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 6825454 - 6825529
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||| |||||||||||||||||||| |||||||    
T  6825454 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctaataccatgttaggaaacatggcatccat 6825529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 384
Target Start/End: Complemental strand, 23343997 - 23343941
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgtt 384  Q
    |||| |||||||||||||||||||||||||||||||||  ||  |||||||||||||||    
T  23343997 gaaagtgcagcggaaaatatccttcaaggtggataccaggtt--ctctgataccatgtt 23343941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 326 - 354
Target Start/End: Original strand, 8837163 - 8837191
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaagg 354  Q
    |||||||||||||||||||||||||||||    
T  8837163 gaaaatgcagcggaaaatatccttcaagg 8837191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 380 - 551
Target Start/End: Original strand, 55849418 - 55849590
Alignment:
Q  380 atgttaggaaacatgtcatccatagatatagagagaaaagcttgg-aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagta 478  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  |||    
T  55849418 atgttaggaaacatggcatccatggatatagagagaaaagcttgggaaaactattgtattgatgatagttgaaatgatacaagaatggaaaagataggta 55849517  T
Q  479 caaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  55849518 caaatgagtcaaccatgtgacttatatagtaactgaactagtgtcctaactaactatatcattattcttaata 55849590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 326 - 526
Target Start/End: Original strand, 55851937 - 55852150
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagaga----aaagct 421  Q
    ||||||||||||||||||||| ||| ||||||||||||   |||||||||||| ||||||||||||||| ||||||| ||||||||||||    ||||||    
T  55851937 gaaaatgcagcggaaaatatcattcgaggtggataccaatcttgctctgatacgatgttaggaaacatggcatccatggatatagagagagagaaaagct 55852036  T
Q  422 tggaaaa---------ctattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact 512  Q
    |||||||         ||||||||||||||||| |||||||||||||||||||  |||||| | |||||||||||||||||||| | |||||||||||||    
T  55852037 tggaaaaactattgtactattgtattgatgatagttgaaatgatacaagaatgtaaaagataactacaaatgagtcaaccatgttagttatatagtaact 55852136  T
Q  513 aaactagtgtccta 526  Q
    || |||||||||||    
T  55852137 aatctagtgtccta 55852150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 5441019 - 5440946
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatc 399  Q
    |||||||||| ||||||||||||||||  |||||||||  || |||||||||||||||||||||||||| ||||    
T  5441019 gaaaatgcaggggaaaatatccttcaaaatggataccaggttagctctgataccatgttaggaaacatggcatc 5440946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 553 - 601
Target Start/End: Complemental strand, 33722128 - 33722080
Alignment:
Q  553 ttactgtttcaattaatattccactttctaagatgttattgtgtttcat 601  Q
    |||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  33722128 ttactgtttcaattgatattccactttgtaagctgttagtgtgtttcat 33722080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 326 - 551
Target Start/End: Complemental strand, 20868901 - 20868675
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttgga 425  Q
    |||||||||||||||||| |  ||||||||||||||||    ||||||||||||||||| ||||||||| |||||||  | | |||||||||||||| ||    
T  20868901 gaaaatgcagcggaaaat-tgtttcaaggtggataccaatcatgctctgataccatgttgggaaacatggcatccatgaaaagagagagaaaagcttaga 20868803  T
Q  426 aaactattgtattgatgatacttgaa-atgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtc 523  Q
    |||||||||||||||||||| ||||| || |||||||||||| ||||||  |||||||| |||||||||||| ||||||||||||||| |||||||| ||    
T  20868802 aaactattgtattgatgatagttgaacataatacaagaatgaaaaagataggtacaaataagtcaaccatgtgacttatatagtaactaaaactagtatc 20868703  T
Q  524 ctaactacctatatcattattcttaata 551  Q
    ||||||| ||||||||||||||||||||    
T  20868702 ctaactaactatatcattattcttaata 20868675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 381 - 518
Target Start/End: Complemental strand, 27462277 - 27462140
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 480  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||  |||||    
T  27462277 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgtattgattatagttgaaatgatacaagaatgaaaaagataggtaca 27462178  T
Q  481 aatgagtcaaccatgtaacttatatagtaactaaacta 518  Q
    |||||||||||||| | |||||||||||||||||||||    
T  27462177 aatgagtcaaccatatgacttatatagtaactaaacta 27462140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 381 - 551
Target Start/End: Complemental strand, 24595375 - 24595209
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 479  Q
    ||||||||||||   |||||||  | |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||| |||||| |||||    
T  24595375 tgttaggaaacacaacatccatgaagatagagagaaaagcttagaaa-ctattgtattgatgatagttgaaaatgatacaagaatgaaaaagattagtac 24595277  T
Q  480 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  24595276 aaatgagtcaaccatgtgacttatatagtaactaaactagtgtcctaa----ctatatcattattcttaata 24595209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 326 - 551
Target Start/End: Complemental strand, 51306554 - 51306330
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaa-gcttgg 424  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||  |||||||| |||||||  | |||||||||||| |||| |    
T  51306554 gaaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatgacatccatgaaaatagagagaaaaagcttag 51306455  T
Q  425 aaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcc 524  Q
    |||  |||||||||||| ||| || ||||||||||| ||| | | |||| |||| || |||||||||||| ||| |||||||||||||| ||||||||||    
T  51306454 aaat-tattgtattgataatagttaaaatgatacaaaaataaaagagattagtataa-tgagtcaaccatataagttatatagtaactacactagtgtcc 51306357  T
Q  525 taactacctatatcattattcttaata 551  Q
    ||| || ||||||||||||||||||||    
T  51306356 taattaactatatcattattcttaata 51306330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 381 - 551
Target Start/End: Complemental strand, 20871490 - 20871313
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattg-----atgatacttgaaa-tgatacaagaatgagaaagatc 474  Q
    |||| ||||||||| |||||||  | | |||||||||||||| ||||||||||||||||     |||||| |||||| | |||||||||||| ||||||     
T  20871490 tgttgggaaacatgacatccatgaaaagagagagaaaagcttagaaaactattgtattgtattgatgatagttgaaaataatacaagaatgaaaaagata 20871391  T
Q  475 agtacaaatgagtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaata 551  Q
     ||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||| ||||||||||    
T  20871390 ggtacaaatgagtcaaccatgtgacttatatagtaactaaaactagtatcctaactaactatatcatcattcttaata 20871313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 430 - 551
Target Start/End: Complemental strand, 51308912 - 51308791
Alignment:
Q  430 tattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaact 529  Q
    |||||||||||| ||| |||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |    
T  51308912 tattgtattgataatagttgaaatgatacaagaataaaagagattagtacaaatgagtcaaccatgtgacttatatagtaactacactagcgtcctaatt 51308813  T
Q  530 acctatatcattattcttaata 551  Q
    | ||||||||||||||||||||    
T  51308812 aactatatcattattcttaata 51308791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 52737774 - 52737842
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52737774 gaaaatgcagcggaaaatatccttcaaggtggataccagatttgctctgataccatgttaggaaacatg 52737842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 551
Target Start/End: Complemental strand, 35610872 - 35610797
Alignment:
Q  476 gtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||  |||||||| |||||| |||||||||||||    
T  35610872 gtacaaatgagtcaaccttgtgacttatatagtaactaaactagtaccctaactaactatattattattcttaata 35610797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 27462344 - 27462290
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgt 435  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  27462344 tgttagtaaacatggcatccatggatatagagagaaaagcttggaaaactattgt 27462290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 385
Target Start/End: Complemental strand, 4602458 - 4602399
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgtta 385  Q
    |||||||||||||||||  ||||||||||||||||| |  || |||||||||||||||||    
T  4602458 gaaaatgcagcggaaaaattccttcaaggtggatactaggttagctctgataccatgtta 4602399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 405 - 551
Target Start/End: Original strand, 20225515 - 20225661
Alignment:
Q  405 atatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttata 504  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||  ||||||| ||||||||||||| |||||||    
T  20225515 atatagagagaaaagcttgcaaaactattgtattgatgataattgaaatgatacaagaatggaaaagataggtacaaaagagtcaaccatgtgacttata 20225614  T
Q  505 tagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20225615 tagtaactaaactagtgtcctaactaactatatcattattcttaata 20225661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 326 - 501
Target Start/End: Original strand, 20226767 - 20226942
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagag--agaaaagcttg 423  Q
    ||||||||||||||||||  ||||||||| |||||||| ||| |||||||||||||||||||||||| | ||| ||| |||||||||  ||||||| |||    
T  20226767 gaaaatgcagcggaaaat--ccttcaaggaggataccagattagctctgataccatgttaggaaacacggcattcatggatatagagagagaaaagtttg 20226864  T
Q  424 gaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaactt 501  Q
     ||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  20226865 aaaaactattgtattgatgataattgaaatgatacaagaatgaaaaagataggtacaaaagagtcaaccatgtaactt 20226942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 18705653 - 18705729
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||    
T  18705653 gaaaatgcagcggaaaaaatccttcaaggtggataccagattagctctgataccatgttagaaaacatggcatccat 18705729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 485 - 550
Target Start/End: Original strand, 20226953 - 20227018
Alignment:
Q  485 agtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaat 550  Q
    |||||||||| | ||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  20226953 agtcaaccatatgacttatatagtaactaaactagtgtcctagctaactatatcattattcttaat 20227018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 9908127 - 9908194
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    |||| ||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||    
T  9908127 gaaagtgcagcggaaaatttc-ttcaaggtggataccagattagctctgataccatgttaggaaacatg 9908194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 29849953 - 29850008
Alignment:
Q  345 tccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||    
T  29849953 tccttcaaggtggataccat--ttgctctgataccatgttatgaaacatggcatccat 29850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 359
Target Start/End: Original strand, 35270048 - 35270081
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggat 359  Q
    ||||||||||||||||||||| ||||||||||||    
T  35270048 gaaaatgcagcggaaaatatcattcaaggtggat 35270081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 7e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 348 - 523
Target Start/End: Original strand, 35416056 - 35416231
Alignment:
Q  348 ttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatact 447  Q
    ||||||||||||||||  | |||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| |||||||||||||| ||| || |    
T  35416056 ttcaaggtggataccaattatgctctgataccatgttaagaaacatggcatccataaaaatagagagaaaagcttgaaaaactattgtattaatggtagt 35416155  T
Q  448 tgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagtaactaaactagtgtc 523  Q
    ||||||||||||| |||||  ||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  35416156 tgaaatgatacaataatgaagaagataagtacaaatgagtcaaccatgtgacttatatagtcactaaactagtgtc 35416231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 387 - 556
Target Start/End: Complemental strand, 12062931 - 12062760
Alignment:
Q  387 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtacaaatga 485  Q
    |||||||| |||||||  | |||||||||||||||| |||||||||| | ||||||||  |||||| | |||||||||||| | |  |  ||||||||||    
T  12062931 gaaacatggcatccatgaaaatagagagaaaagcttagaaaactattctcttgatgatggttgaaaataatacaagaatgaaagatgtgggtacaaatga 12062832  T
Q  486 gtcaaccatgtaacttatatagtaact-aaactagtgtcctaactacctatatcattattcttaatatttac 556  Q
    ||||||||||| ||||||||||||||| |||||||| || |||||| |||||||||||||||||||| ||||    
T  12062831 gtcaaccatgtgacttatatagtaactaaaactagtatcttaactaactatatcattattcttaatagttac 12062760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 327 - 471
Target Start/End: Original strand, 3788446 - 3788591
Alignment:
Q  327 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccatagatatagagagaa-aagcttgga 425  Q
    |||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||  |||||||| |||||||  | |||||||||| ||| || ||    
T  3788446 aaaatgcagcggaaaaaattgttcaaggtggataccaatcatgctctgataccatgttgagaaacatggcatccatgaaaatagagagaagaagtttaga 3788545  T
Q  426 aaactattgtattgatgatacttgaaatgatacaagaatgagaaag 471  Q
    ||| |||||||||||| ||| |||||||||||||||||||| ||||    
T  3788546 aaattattgtattgataatagttgaaatgatacaagaatgaaaaag 3788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 387 - 551
Target Start/End: Complemental strand, 369425 - 369263
Alignment:
Q  387 gaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgag 486  Q
    |||||||| |||||||  | ||| |||||||| |||  | ||||||||||||||||||| |||||| ||||||| ||| | | ||||| |||||||| ||    
T  369425 gaaacatgacatccatgaaaataaagagaaaaactt--acaactattgtattgatgatagttgaaaagatacaaaaataaaagagatcggtacaaattag 369328  T
Q  487 tcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
     ||||||| | |||||| |||||||||||||| | | ||||||| |||||| |||||||||||||    
T  369327 ccaaccatatgacttatttagtaactaaactactattctaactaactatattattattcttaata 369263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 381 - 520
Target Start/End: Original strand, 31909100 - 31909236
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtaca 480  Q
    |||||||||||||| |||||||  | ||||||||||||||||  ||| ||||||||||||||||| |||||| ||||||| ||||| | |||   |||||    
T  31909100 tgttaggaaacatg-catccatgaaaatagagagaaaagcttacaaagctattgtattgatgatagttgaaaagatacaa-aatgaaagagagaggtaca 31909197  T
Q  481 aatgagtcaaccatgtaacttatatagtaactaaactagt 520  Q
    |||||||||| | ||| ||||||||||| |||||||||||    
T  31909198 aatgagtcaa-cttgtgacttatatagtgactaaactagt 31909236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 551
Target Start/End: Complemental strand, 4676201 - 4676130
Alignment:
Q  480 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4676201 aaatgagtcaaccctgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4676130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 551
Target Start/End: Complemental strand, 4678146 - 4678075
Alignment:
Q  480 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  4678146 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 4678075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 4676354 - 4676285
Alignment:
Q  326 gaaaatgcagcggaaaa-tatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||| |||||||||||||||||||||  || ||||||||||||| ||||||||||||    
T  4676354 gaaaatgcagcggaaaaatatccttcaaggtggataccaggttagctctgataccatattaggaaacatg 4676285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 39391 - 39327
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaa 390  Q
    ||||||||||||||||||||||||||||||||||| |  ||| ||||||||| ||||||| ||||    
T  39391 gaaaatgcagcggaaaatatccttcaaggtggatatcggattagctctgatatcatgttaagaaa 39327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 394
Target Start/End: Complemental strand, 26174437 - 26174391
Alignment:
Q  348 ttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||    
T  26174437 ttcaaggtggataccatatttgttctgataccatgttagtaaacatg 26174391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 7277695 - 7277762
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||||||||||||||||||||||||||    
T  7277695 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctctgataccatgttaggaaacatg 7277762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 407 - 530
Target Start/End: Original strand, 3785816 - 3785937
Alignment:
Q  407 atagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatat 505  Q
    |||||||||| |||||| | ||| |||||||||||| ||| |||||||||||||||||| | |||| | | |||||||||||||| | ||| ||||||||    
T  3785816 atagagagaagaagcttaggaaattattgtattgataatagttgaaatgatacaagaataaaaaag-tga-tacaaatgagtcaa-cttgtgacttatat 3785912  T
Q  506 agtaactaaactagtgtcctaacta 530  Q
    ||| |||| | ||||  ||||||||    
T  3785913 agtgactatagtagtaccctaacta 3785937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 19472471 - 19472563
Alignment:
Q  369 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 460  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19472471 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 460
Target Start/End: Original strand, 19543396 - 19543488
Alignment:
Q  369 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 460  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19543396 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 19589300 - 19589208
Alignment:
Q  369 gctctgataccatgttaggaaacatgtcatccatagatatagagag-aaaagcttggaaaactattgtattgatgatacttgaaatgatacaa 460  Q
    ||||||||||||||||  |||||||| |||||||  | |||||||| ||||||||   ||| |||| ||||||  ||| ||||||||||||||    
T  19589300 gctctgataccatgttgagaaacatggcatccatgaaaatagagagaaaaagcttaagaaattattatattgaaaatagttgaaatgatacaa 19589208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 381 - 551
Target Start/End: Original strand, 26608008 - 26608177
Alignment:
Q  381 tgttaggaaacatgtcatccatagatatagagagaaaagcttggaaaactattgtattgatgatacttgaaa-tgatacaagaatgagaaagatcagtac 479  Q
    ||||| |||||||| |||||||  | |||||||||||||||| ||||  |||||||||||||||| |||||| |||||||||||||| ||||||  ||||    
T  26608008 tgttaagaaacatgacatccatgaaaatagagagaaaagcttagaaa--tattgtattgatgatagttgaaaatgatacaagaatgaaaaagataggtac 26608105  T
Q  480 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    | ||||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  26608106 agatgagtcaaccttgtgacttatatagtaactgaactagtatcctaactaactatatcattattcttaata 26608177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 24038456 - 24038380
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||| |||||||    
T  24038456 gaaaatgcagcggaaaatatccttcaaggtggataccaaccaggctctgataccatgttagaaaacatggcatccat 24038380  T

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Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 410 - 551
Target Start/End: Original strand, 27172855 - 27172995
Alignment:
Q  410 gagagaaaagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatgagtcaaccatgtaacttatatagta 509  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||  ||||||   ||||||||||||| | |  | ||||||||||||    
T  27172855 gagagaaaagcttggaaaactattctattgatgatagttgaaatgatacaagaatggaaaagatagttacaaatgagtcacctaa-tgacttatatagta 27172953  T
Q  510 actaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  27172954 actaaactagtatcctaacttactatatcattattcttaata 27172995  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 35309093 - 35309160
Alignment:
Q  327 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  35309093 aaaatgcagcggaaaatatccttcaaggtggataccagattagctctgataccatgttaggaaacatg 35309160  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 41951676 - 41951752
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||||||||||| |||||||    
T  41951676 gaaaatgcagcggaaaatatccttcaaggcggataccagattagctctaataccatgttaggaaacatggcatccat 41951752  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 551
Target Start/End: Original strand, 39040636 - 39040707
Alignment:
Q  480 aaatgagtcaaccatgtaacttatatagtaactaaactagtgtcctaactacctatatcattattcttaata 551  Q
    ||||||||||||| ||| |||||||||||||||||||||||   ||||||| ||||||||||||||||||||    
T  39040636 aaatgagtcaaccttgtgacttatatagtaactaaactagtactctaactaactatatcattattcttaata 39040707  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 30518630 - 30518698
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||  |||||||    
T  30518630 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatg 30518698  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 326 - 394
Target Start/End: Original strand, 30558970 - 30559038
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||||||  |||||||    
T  30558970 gaaaatgcagcggaaaatatcttttaaggtggataccagattagctcttataccatgttataaaacatg 30559038  T

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Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 21254340 - 21254265
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||| |||||||||||||||||||||| |||||||    
T  21254340 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctatgataccatgttaggaaacatggcatccat 21254265  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 26873149 - 26873182
Alignment:
Q  369 gctctgataccatgttaggaaacatgtcatccat 402  Q
    |||||||||||||||||||||||||| |||||||    
T  26873149 gctctgataccatgttaggaaacatggcatccat 26873182  T

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Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 326 - 402
Target Start/End: Complemental strand, 41830393 - 41830317
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccat 402  Q
    ||||||||||||||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||||||||    
T  41830393 gaaaatgcagcggaaaatatccttcaaggtggataccaagttagctctaataccatgttaggaaacatgtcatccat 41830317  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 326 - 394
Target Start/End: Complemental strand, 34510888 - 34510821
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  34510888 gaaaatgcagcggaaaat-tccttcaaggtggataccagattagctctgataccatgttaggaaacatg 34510821  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 387 - 530
Target Start/End: Complemental strand, 2577142 - 2577001
Alignment:
Q  387 gaaacatgtcatccatagatatagagagaa-aagcttggaaaactattgtattgatgatacttgaaatgatacaagaatgagaaagatcagtacaaatga 485  Q
    |||||||| |||||||  | |||||||||| |||||| ||||| |||||||||||| ||| |||||||||||||||||||| |||| | | |||||||||    
T  2577142 gaaacatggcatccatgaaaatagagagaagaagcttagaaaattattgtattgataatagttgaaatgatacaagaatgaaaaag-tga-tacaaatga 2577045  T
Q  486 gtcaaccatgtaacttatatagtaactaaactagtgtcctaacta 530  Q
    ||||| | ||| ||||||||||| |||| ||||||  ||||||||    
T  2577044 gtcaa-cttgtgacttatatagtgactatactagtaccctaacta 2577001  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 36647433 - 36647500
Alignment:
Q  327 aaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatg 394  Q
    ||||||||||||||||||||||||||| || |||||| ||| ||||||||||||| |||| |||||||    
T  36647433 aaaatgcagcggaaaatatccttcaagatgaataccagattagctctgataccatattagaaaacatg 36647500  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 326 - 405
Target Start/End: Original strand, 146666 - 146744
Alignment:
Q  326 gaaaatgcagcggaaaatatccttcaaggtggataccatatttgctctgataccatgttaggaaacatgtcatccataga 405  Q
    ||||||||||||||||| ||  ||||||||||||||||    |||| |||||||||||||||||||||| |||| |||||    
T  146666 gaaaatgcagcggaaaa-attgttcaaggtggataccaatcatgctttgataccatgttaggaaacatggcatctataga 146744  T

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