View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_60 (Length: 321)

Name: NF15182_low_60
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_60
NF15182_low_60
[»] chr5 (3 HSPs)
chr5 (10-307)||(26187103-26187400)
chr5 (88-148)||(23608950-23609010)
chr5 (88-148)||(23840346-23840406)
[»] chr8 (2 HSPs)
chr8 (32-148)||(28944733-28944849)
chr8 (49-148)||(27264999-27265098)
[»] chr2 (2 HSPs)
chr2 (140-297)||(33641223-33641380)
chr2 (88-148)||(40068581-40068641)
[»] chr1 (2 HSPs)
chr1 (46-148)||(19816751-19816853)
chr1 (88-148)||(26080718-26080778)
[»] chr3 (1 HSPs)
chr3 (31-151)||(460182-460302)
[»] chr7 (1 HSPs)
chr7 (32-144)||(3202269-3202381)
[»] chr4 (2 HSPs)
chr4 (88-148)||(17558473-17558533)
chr4 (88-148)||(52476153-52476213)


Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 26187103 - 26187400
Alignment:
Q  10 aattctaccaaaccagtccatttttataatagtcagagctcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattcc 109  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26187103 aattctaccaaaccaatccatttttacaatagtcagagctcaacttcgtatatctaattaacatatcaaacgacgtatgaattgagtaaacgaacattcc 26187202  T
Q  110 ccgaaaagcttcgaatgtatagattataagtattatttttgtgttatggttcaagtaacaagttagttcaattttactaaacaatgcgattgagtataga 209  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26187203 ccaaaaagcttcgaatgtatagattataagtattatttttgtgttatggttcaagtaacaagttaattcaattttactaaacaatgcgattgagtataga 26187302  T
Q  210 aacagggaagaaacgtttctctaacttgtaaccagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgtatatgttatat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26187303 aacagggaagaaacgtttctctaacttgtaaccagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgtatatattatat 26187400  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 23608950 - 23609010
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  23608950 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 23609010  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 23840346 - 23840406
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  23840346 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 23840406  T

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Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 28944733 - 28944849
Alignment:
Q  32 tttataatagtcagagctcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattccccgaaaagcttcgaatgtatag 131  Q
    |||| |||||||||||||||||||||  | | ||||||| ||||||||| ||||   |||||||||||||||||||||| | ||||||| ||||||||||    
T  28944733 tttacaatagtcagagctcaacttcgtctttttaattaaaatatcaaacgacgtccaaattgagtaaacgaacattccctggaaagcttagaatgtatag 28944832  T
Q  132 attataagtattatttt 148  Q
     |||||| |||||||||    
T  28944833 tttataaatattatttt 28944849  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 27264999 - 27265098
Alignment:
Q  49 tcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    |||||||||  ||| ||||||| ||||||||| ||||  ||||||| ||||||||||||||  | ||||||| ||||||  ||||||||| ||| |||||    
T  27264999 tcaacttcgtctatttaattaaaatatcaaactacgtccgaattgactaaacgaacattccttggaaagcttagaatgtcaagattataaatataatttt 27265098  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 297
Target Start/End: Original strand, 33641223 - 33641380
Alignment:
Q  140 tattatttttgtgttatggttcaagtaacaagttagttcaattttactaaacaatgcgattgagtatagaaacagggaagaaacgtttctctaacttgta 239  Q
    |||||||||||| || |||||  |||||| | |||||||| ||| |||||| |||  |  || ||| | ||| |||  ||||| |||||||||||||| |    
T  33641223 tattatttttgttttgtggttttagtaaccaattagttcagtttaactaaagaatatgcatgggtacaaaaataggacagaaatgtttctctaacttgca 33641322  T
Q  240 accagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgta 297  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||| |||  |||||||||    
T  33641323 accagaacttctcctactctaattaatgaaattccacgattcttgagcctattctgta 33641380  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 40068581 - 40068641
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  40068581 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 40068641  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 19816751 - 19816853
Alignment:
Q  46 agctcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattat 145  Q
    ||||||||||| ||||| ||||||||||| ||||||| ||   |||||||||||| |||||| ||  |||| ||| ||||||||| ||||||| ||||||    
T  19816751 agctcaacttcacatatttaattaacataacaaacaatgttcaaattgagtaaacaaacatttccataaaatcttggaatgtataaattataaatattat 19816850  T
Q  146 ttt 148  Q
    |||    
T  19816851 ttt 19816853  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 26080778 - 26080718
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  26080778 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 26080718  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 151
Target Start/End: Complemental strand, 460302 - 460182
Alignment:
Q  31 ttttataatagtcagagctcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattccccgaaaagcttcgaatgtata 130  Q
    ||||| |||| || ||| ||||||| |||||| ||||||||||| |||||| ||| |||||| || |||| ||||||||  | |||| || ||||| |||    
T  460302 ttttacaataatctgagttcaactttgcatatttaattaacatagcaaacagcgtgtgaatttagaaaacaaacattccgaggaaagattagaatgaata 460203  T
Q  131 gattataagtattatttttgt 151  Q
    ||||| || ||| ||||||||    
T  460202 gattagaaatataatttttgt 460182  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 3202381 - 3202269
Alignment:
Q  32 tttataatagtcagagctcaacttcgcatatctaattaacatatcaaacaacgtatgaattgagtaaacgaacattccccgaaaagcttcgaatgtatag 131  Q
    |||| |||||||||||||||||||||  ||| ||||||| ||||||||  || |  | ||| ||||||||||| || |  | ||| ||| ||||| ||||    
T  3202381 tttacaatagtcagagctcaacttcgtctatttaattaaaatatcaaaatacattcgcattaagtaaacgaacctttcttggaaaacttagaatgcatag 3202282  T
Q  132 attataagtatta 144  Q
    ||||||| |||||    
T  3202281 attataaatatta 3202269  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 17558533 - 17558473
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  17558533 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 17558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 52476213 - 52476153
Alignment:
Q  88 gaattgagtaaacgaacattccccgaaaagcttcgaatgtatagattataagtattatttt 148  Q
    ||||||||||||||||||||||| | ||||||| ||||||  ||| ||||| ||| |||||    
T  52476213 gaattgagtaaacgaacattccctggaaagcttagaatgtcaagaatataaatataatttt 52476153  T

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