View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_67 (Length: 308)
Name: NF15182_low_67
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 23873137 - 23873325
Alignment:
| Q |
21 |
aatgaacaataaagttaccatttggagccagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagnnnnnnntgcacattc |
120 |
Q |
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| T |
23873137 |
aatgaacaataaagttaccatttggagcaagctaagaaacgtgtatgataataatattttgtggcattgtcatgaaatggtaagaaaaaaatgcacattc |
23873236 |
T |
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| Q |
121 |
tatggaattggatttcagtgttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
209 |
Q |
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| T |
23873237 |
tatggaattggatttcagtgttatcaattgtcattttcaatattttcggtgaaagttcatttaacaagttaaaataacatttccctctc |
23873325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 272
Target Start/End: Original strand, 23873343 - 23873374
Alignment:
| Q |
241 |
atgtgtcgatataaaatttcttatgtatataa |
272 |
Q |
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| T |
23873343 |
atgtgtcgatataaaatttcttatgtatataa |
23873374 |
T |
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