View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_68 (Length: 308)
Name: NF15182_low_68
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 247
Target Start/End: Original strand, 42009320 - 42009553
Alignment:
| Q |
14 |
tactgttcctgaaattgcattgccactttgaggtcagaagtaactccagcacatcagtcatgtttttagtccattcgtattgttgtctaacgttattgat |
113 |
Q |
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| T |
42009320 |
tactgttcctgaaattgcattggcactttgaggtcagaagtaactccagcacatcagtcatgtttttagtccatttgtattgttgtctaacgttattggt |
42009419 |
T |
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| Q |
114 |
caattattgtaccagattaattgccagccaagtacgctagctctttccatctattttctcaattgacttttgttgacaaatatacatttaaattttgact |
213 |
Q |
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| T |
42009420 |
caattattgtaccagattaattgccagccaagtacgctagctctttccatctattttctcaattgacttttgttgacaaatatacatttaaattttgact |
42009519 |
T |
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| Q |
214 |
tgaagagttctacttccatttctactccatcata |
247 |
Q |
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| T |
42009520 |
tgaagagttctacttccatttctactccatcata |
42009553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 42009566 - 42009616
Alignment:
| Q |
243 |
tcatactacaacaaccaac---aaacccctcttcactcctttttgcatttc |
290 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42009566 |
tcatactacaacaaccaactacaaacccctcttcactcctttttgcatttc |
42009616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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