View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_70 (Length: 306)
Name: NF15182_low_70
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 67 - 286
Target Start/End: Complemental strand, 606090 - 605871
Alignment:
| Q |
67 |
ataccttgggaaggctctactccattgagctctttgcacatctgaaggttcggccctggaactcaaggctatataaattagtcatttttcaaggaattta |
166 |
Q |
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| T |
606090 |
ataccttgaggaggctctactccattgagctctttgcacatctgaaggttcggccttggaattcaaggctatataaattagtcatttttcgaggaattta |
605991 |
T |
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| Q |
167 |
acaatttgttaatctcatcttcccatgcataacaagctagtgatcattctctccaccttttacaagggttgaagatgacattgtcgatcatgtgttagtg |
266 |
Q |
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| T |
605990 |
acaatttattaatctcatattcccctgcataacaagctagtaatcattctctccaccttttataagggttgaagatgacattgtcgatcatgtgttagtg |
605891 |
T |
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| Q |
267 |
gtattaaaaatagtgttaca |
286 |
Q |
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| T |
605890 |
ggattaaaaatagtgttaca |
605871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 606163 - 606116
Alignment:
| Q |
1 |
aataataaatttttcttttactggggtagtagtagtactactgggcta |
48 |
Q |
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| T |
606163 |
aataagaaatttttcttttagtggggtagtagtagtactactggacta |
606116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 36869563 - 36869607
Alignment:
| Q |
61 |
agactcataccttgggaaggctctactccattgagctctttgcac |
105 |
Q |
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| T |
36869563 |
agactcataccttgggaagtcccaactccattgagctctttgcac |
36869607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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