View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_76 (Length: 290)
Name: NF15182_low_76
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 45238918 - 45239181
Alignment:
| Q |
9 |
gattattctcaccaactgcaactaaatttgtcttcacgtttcagcaagtactactcattgaacattctttaatcttctaccaaaggtccaaatgaaattc |
108 |
Q |
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| T |
45238918 |
gattattctcaccaactgcaactaaatttgtcttcacgtttcagcaagtactactcat-gaacattctttaatcttctaccaaaggtccaaatgaaattc |
45239016 |
T |
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| Q |
109 |
atttttgttcatccattacaaccttaaatactannnnnnncactcaatgaacaacaattttctctaacaggtttgtgtaattaagtttttgttctccatt |
208 |
Q |
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| T |
45239017 |
atttttgttcatccattacaatcttaaatactattttttatactcaatgaacaacaattttctctaacaggtttgtgtaattaagtttttgttctccatt |
45239116 |
T |
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| Q |
209 |
gtaaaaacaaatctatttttatgtgtgttattttttgaagtgaaaacaacaattttcattatatg |
273 |
Q |
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| T |
45239117 |
gtaaaaacaaacctatttttatgtgtgttattttttgaagtgaaaacaacaattttcattatatg |
45239181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 219
Target Start/End: Complemental strand, 36424985 - 36424808
Alignment:
| Q |
39 |
tcttcacgtttcagcaagtactactcattgaacattctttaat-cttctaccaaaggtccaaatgaaatt--catttttgttcatccattacaaccttaa |
135 |
Q |
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| T |
36424985 |
tcttctcgtttcagcaagtaccactca----actttcttttattcttctttcaaaggtccaaaagaaatctccatttttgttcatccattaaaatcttaa |
36424890 |
T |
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| Q |
136 |
atactannnnnnncactcaatgaacaacaattttctctaacaggtttgtgtaattaagtttttgttctccattgtaaaaacaaa |
219 |
Q |
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| T |
36424889 |
atactatttttttcactaaatgaaca-cagttttctctaacaggtttgtgtgattacgtttatgttctccattg-aaaaacaaa |
36424808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 219
Target Start/End: Complemental strand, 35143848 - 35143736
Alignment:
| Q |
108 |
catttttgttcatccattacaaccttaaatactannnnnnn--cactcaatgaacaacaattttctctaacaggtttgtgtaattaagtttttgttctcc |
205 |
Q |
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||||||||||||||||||| || ||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||| ||| |||||||| |
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| T |
35143848 |
catttttgttcatccattaaaatcttaaatactattttttttccactcatttaacaacaattttctctatcaggtttgtgtgattgcatttatgttctcc |
35143749 |
T |
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| Q |
206 |
attgtaaaaacaaa |
219 |
Q |
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|||| ||||||||| |
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| T |
35143748 |
attg-aaaaacaaa |
35143736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 44889953 - 44889913
Alignment:
| Q |
46 |
gtttcagcaagtactactcattgaacattctttaatcttct |
86 |
Q |
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| T |
44889953 |
gtttcagcaagtactactcattgaagattcttaattcttct |
44889913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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