View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_78 (Length: 275)

Name: NF15182_low_78
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_78
NF15182_low_78
[»] chr2 (4 HSPs)
chr2 (18-251)||(1403416-1403653)
chr2 (25-176)||(1399711-1399860)
chr2 (25-71)||(18248839-18248885)
chr2 (127-175)||(34456552-34456600)
[»] chr8 (4 HSPs)
chr8 (127-175)||(9610236-9610284)
chr8 (126-176)||(45192116-45192166)
chr8 (127-175)||(7421555-7421603)
chr8 (127-176)||(37109480-37109529)
[»] chr5 (1 HSPs)
chr5 (126-176)||(32535363-32535413)
[»] scaffold0123 (2 HSPs)
scaffold0123 (27-76)||(28000-28049)
scaffold0123 (127-175)||(28249-28297)
[»] chr3 (2 HSPs)
chr3 (127-176)||(12931401-12931450)
chr3 (127-176)||(26187379-26187428)
[»] chr1 (1 HSPs)
chr1 (127-175)||(46298936-46298984)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 1403416 - 1403653
Alignment:
Q  18 atatgtctgatgatgttaaaagaagtgtcaattttacttaactaaccttatttactatttggtgcattgaaaataatgtacaggcaattaattaagagac 117  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  1403416 atatgtctgatgatgttaaaggacgtgtcaattttacttaactaaccttatttactatttggtgcattgaaaataatgtacactcaattaattaagagac 1403515  T
Q  118 aatcaaatataaaataataattgtacattaaaaagtttaagtgatattcattttaaaac----nnnnnnnnngttgctaaaacgacatttattttttaaa 213  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||              ||| |||| ||||||| ||||||||||    
T  1403516 aatcaaatataaaataataattgtatattaaaaagtttaagtgatattcattttaaaacttttttttttttttttgttaaatcgacattcattttttaaa 1403615  T
Q  214 atggagggagtattattttattctattattaactgaag 251  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1403616 atggagggagtattattttattctattattaactgaag 1403653  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 1399711 - 1399860
Alignment:
Q  25 tgatgatgttaaaagaagtgtcaattttacttaactaaccttatttactatttggt-gcattgaaaataatgtacaggcaattaattaagagacaatcaa 123  Q
    ||||||||||||| || ||||||  ||||||||||||| ||||||||||||| ||| | | ||    | |||||||  ||||||||||||  ||||| ||    
T  1399711 tgatgatgttaaaggacgtgtcagatttacttaactaatcttatttactattcggttggaatgct--ttatgtacactcaattaattaaggtacaattaa 1399808  T
Q  124 atataaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    | ||||| ||||||||||||||||||||||| |||||| ||| ||||||||||    
T  1399809 aaataaa-taataattgtacattaaaaagttgaagtgacatttattttaaaac 1399860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 18248885 - 18248839
Alignment:
Q  25 tgatgatgttaaaagaagtgtcaattttacttaactaaccttattta 71  Q
    ||||||||||||||||  || |||||||||| |||||||||||||||    
T  18248885 tgatgatgttaaaagacatgacaattttactaaactaaccttattta 18248839  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 34456552 - 34456600
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaa 175  Q
    |||||||||||||  |||||||||| | |||||||| ||||||||||||    
T  34456552 taaaataataattccacattaaaaaatgtaagtgattttcattttaaaa 34456600  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 9610284 - 9610236
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaa 175  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||||||    
T  9610284 taaaataataattctacattaaaaagtccaagtgatattcattttaaaa 9610236  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 45192116 - 45192166
Alignment:
Q  126 ataaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    |||||||| ||||| |||||||||||||  |||||||||||||||||||||    
T  45192116 ataaaatagtaattatacattaaaaagtgcaagtgatattcattttaaaac 45192166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 7421555 - 7421603
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaa 175  Q
    ||||||||||||| ||||||||||||| ||| ||| |||||||||||||    
T  7421555 taaaataataattctacattaaaaagtgtaactgacattcattttaaaa 7421603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 37109480 - 37109529
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    ||||||||||||| |||||| ||||||  |||||| ||||||||||||||    
T  37109480 taaaataataattctacattgaaaagtacaagtgacattcattttaaaac 37109529  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 32535363 - 32535413
Alignment:
Q  126 ataaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    |||||||||||||| |||||| |||||| ||||||| ||||||||||||||    
T  32535363 ataaaataataattttacattgaaaagtgtaagtgacattcattttaaaac 32535413  T

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Target: scaffold0123 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 28000 - 28049
Alignment:
Q  27 atgatgttaaaagaagtgtcaattttacttaactaaccttatttactatt 76  Q
    ||||||||||||||  ||  ||||||||| ||||||||||||||||||||    
T  28000 atgatgttaaaagacatgataattttactaaactaaccttatttactatt 28049  T

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Target: scaffold0123; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 28249 - 28297
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaa 175  Q
    ||||||||||||| |||||| ||||||  |||||| |||||||||||||    
T  28249 taaaataataattatacattgaaaagtgcaagtgacattcattttaaaa 28297  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 12931401 - 12931450
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    ||||||||||||| ||| |||||||||  |||||| ||||||||||||||    
T  12931401 taaaataataattatacgttaaaaagtgcaagtgacattcattttaaaac 12931450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 26187379 - 26187428
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaac 176  Q
    ||||||||||||| || ||| |||||| ||||||| ||||||||||||||    
T  26187379 taaaataataattctatattgaaaagtataagtgacattcattttaaaac 26187428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 46298936 - 46298984
Alignment:
Q  127 taaaataataattgtacattaaaaagtttaagtgatattcattttaaaa 175  Q
    |||| |||||||| |||||| |||| | |||||||||||||||||||||    
T  46298936 taaactaataattttacattgaaaaatgtaagtgatattcattttaaaa 46298984  T

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