View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15182_low_8 (Length: 639)
Name: NF15182_low_8
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 296 - 624
Target Start/End: Original strand, 609583 - 609911
Alignment:
| Q |
296 |
aataccttcttcttctactacttccttcacactctcctcttcttttgttggggagaccgagggagcgtcaggcgcaacaacaaccggtgaattctctacg |
395 |
Q |
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| T |
609583 |
aataccttcttcttctactacttccttcacactctcctcttcttttgttggggagaccgagggagcgtcaagagcaacaacaaccggtgaattctctacg |
609682 |
T |
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| Q |
396 |
tcctcaaacccttgattttcatcttcttcgggatcattccaaaaagaaagacgaagtcttccattacttctctcagcttggaagcaagaaacagttgatg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
609683 |
tcctcaaacccttgattttcatcttcttcgggatcattccaaaaagaaagacgaagtcttccattacttctctcagcttggaagcaagaaacagttgatg |
609782 |
T |
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| Q |
496 |
gaactttggttagctcaatcactaaccttccattttctctatgcggttccactcttagagattctgttcctctcatactcttcaacggtggtggaaaact |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
609783 |
gaactttggttagctcaatcactaaccttccattttctctatgtggtttcactcttatagattctgatcctctcatactcttcaacggtggtggaaaact |
609882 |
T |
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| Q |
596 |
ctttgttctcattttctcacctcccaaat |
624 |
Q |
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| T |
609883 |
ctttgttctcattttctcacctcccaaat |
609911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 609286 - 609558
Alignment:
| Q |
5 |
gggatattccgaagaaaaagaacagatacctaaaaattctnnnnnnnnttgttttacatgatcattgttaaataatagatagagagacaaagatccaaat |
104 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
609286 |
gggatattcagaagaaaaagaacagatacctaaaaattctaaaaaaaattgttttacatgatcattgttaaataatt------------------caaat |
609367 |
T |
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| Q |
105 |
gagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctccttcttc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
609368 |
gagagttttcaagaagttgccaatgcaagccaaagaggttcaccccaatttcccaacctttcattgttttcatgtttaccttctttgcatctccttcttc |
609467 |
T |
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| Q |
205 |
tacttcccctctcatacctctccattttcacttcactcacaactttccaaccattgtcttccttctctatacactcaacaacatgtgtcgg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
609468 |
tacttcccctctcatacctctccattttcacttcactctcaactttccaaccattttcttccttctctatacactcaacaacacgtgtcgg |
609558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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