View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_80 (Length: 274)

Name: NF15182_low_80
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_80
NF15182_low_80
[»] chr6 (2 HSPs)
chr6 (66-133)||(8745194-8745261)
chr6 (75-133)||(22626204-22626262)
[»] chr2 (1 HSPs)
chr2 (9-90)||(1786533-1786613)
[»] chr4 (1 HSPs)
chr4 (23-90)||(6226336-6226402)


Alignment Details
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 8745194 - 8745261
Alignment:
Q  66 cagattttcaatactattcctaaaaatacgtttgaattcaatggtaacataacaggaaaagcttcaaa 133  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8745194 cagattttcaataccattactaaaaatacgtttgaattcaatggtaacataacaggtaaagcttcaaa 8745261  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 22626204 - 22626262
Alignment:
Q  75 aatactattcctaaaaatacgtttgaattcaatggtaacataacaggaaaagcttcaaa 133  Q
    ||||| ||| |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  22626204 aataccattactaaaaatacgtttgaattcaatgataacataacaggtaaagcttcaaa 22626262  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 1786613 - 1786533
Alignment:
Q  9 taagtctgaaacacaaaattcgcaaccccaaaacatgaaattccttctaaacaaaatcagattttcaatactattcctaaaa 90  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||||| || |||||||||||||| ||| ||||||    
T  1786613 taagtctgaaacacaaaattcccaaccccaaa-catgaaattcctcctaaacataaacagattttcaataccattactaaaa 1786533  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 6226402 - 6226336
Alignment:
Q  23 aaaattcgcaaccccaaaacatgaaattccttctaaacaaaatcagattttcaatactattcctaaaa 90  Q
    ||||||| |||||||||| |||||||||||| ||||||| || |||||||||||||| ||| ||||||    
T  6226402 aaaattcccaaccccaaa-catgaaattcctcctaaacataaacagattttcaataccattactaaaa 6226336  T

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