View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15182_low_87 (Length: 262)
Name: NF15182_low_87
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15182_low_87 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 7341844 - 7342059
Alignment:
| Q |
1 |
cctgtatcattcattcatctctccaaccatatcatcattccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7341844 |
cctgtatcattcattcatctctccaaccatatcatcattccctcaagtccagtaatggctcaacaggtatcatctttaacttcctcatctctctttcttt |
7341943 |
T |
|
| Q |
101 |
ctcacttcatatag--aatcaaggtgcaaatgcaatgcttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgatta-t |
197 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7341944 |
ctcacttcatatagataatcaaggtgcaaatgcaatgcttacaaagttacaccaatgcaaagtttttaaaattctagttccaatcacaaatttgattatt |
7342043 |
T |
|
| Q |
198 |
tcatggttgattaata |
213 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7342044 |
tcatggttgattaata |
7342059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University