View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_9 (Length: 607)

Name: NF15182_low_9
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_9
NF15182_low_9
[»] chr1 (34 HSPs)
chr1 (1-588)||(8281025-8281612)
chr1 (79-463)||(35109418-35109797)
chr1 (38-479)||(10996771-10997216)
chr1 (65-428)||(32736864-32737229)
chr1 (54-232)||(918336-918514)
chr1 (50-391)||(29651716-29652058)
chr1 (50-344)||(47703787-47704081)
chr1 (32-218)||(22819506-22819693)
chr1 (32-441)||(47098660-47099070)
chr1 (50-144)||(40816668-40816762)
chr1 (32-384)||(47102674-47103026)
chr1 (32-428)||(16124349-16124751)
chr1 (103-215)||(17345424-17345536)
chr1 (50-384)||(13598310-13598645)
chr1 (32-136)||(11031309-11031412)
chr1 (50-428)||(19072789-19073173)
chr1 (50-428)||(19120679-19121063)
chr1 (193-428)||(27104367-27104602)
chr1 (324-380)||(48382607-48382663)
chr1 (49-88)||(6354261-6354300)
chr1 (54-97)||(48382346-48382389)
chr1 (50-146)||(9022758-9022852)
chr1 (21-119)||(25116523-25116623)
chr1 (29-177)||(32889558-32889703)
chr1 (53-132)||(15864726-15864805)
chr1 (383-441)||(17345707-17345766)
chr1 (32-119)||(27104236-27104322)
chr1 (401-480)||(48591013-48591092)
chr1 (401-480)||(48600708-48600787)
chr1 (383-441)||(50521291-50521350)
chr1 (263-384)||(775584-775706)
chr1 (57-129)||(2210624-2210697)
chr1 (323-423)||(9023956-9024059)
chr1 (263-346)||(9476211-9476295)
[»] chr2 (28 HSPs)
chr2 (1-389)||(28770577-28770964)
chr2 (1-391)||(3277908-3278293)
chr2 (50-391)||(2869544-2869886)
chr2 (14-244)||(18674216-18674447)
chr2 (193-481)||(16388465-16388760)
chr2 (50-305)||(14698861-14699112)
chr2 (90-184)||(15903782-15903876)
chr2 (383-480)||(16388259-16388355)
chr2 (32-441)||(33528459-33528868)
chr2 (32-391)||(13569234-13569591)
chr2 (50-384)||(33118048-33118380)
chr2 (50-391)||(8390001-8390341)
chr2 (50-441)||(31055892-31056288)
chr2 (32-384)||(34388771-34389113)
chr2 (50-294)||(2837881-2838124)
chr2 (50-391)||(39482836-39483178)
chr2 (32-129)||(21630111-21630207)
chr2 (32-181)||(41586385-41586532)
chr2 (32-129)||(17865371-17865467)
chr2 (50-428)||(8039923-8040309)
chr2 (263-441)||(20522070-20522254)
chr2 (105-294)||(1345448-1345635)
chr2 (32-67)||(11049487-11049522)
chr2 (93-244)||(27139853-27140004)
chr2 (111-166)||(35397639-35397694)
chr2 (50-128)||(10707104-10707182)
chr2 (111-149)||(27149207-27149245)
chr2 (32-128)||(23078306-23078400)
[»] chr4 (30 HSPs)
chr4 (21-346)||(34670488-34670810)
chr4 (32-480)||(37781673-37782126)
chr4 (1-480)||(873321-873809)
chr4 (53-387)||(42599429-42599762)
chr4 (32-428)||(10047242-10047643)
chr4 (32-166)||(5112366-5112499)
chr4 (47-234)||(39593789-39593974)
chr4 (324-463)||(4956015-4956157)
chr4 (84-441)||(1983187-1983546)
chr4 (139-307)||(8114679-8114843)
chr4 (111-246)||(18912276-18912411)
chr4 (32-218)||(39774140-39774325)
chr4 (32-429)||(3777412-3777811)
chr4 (50-128)||(24333978-24334056)
chr4 (32-129)||(5269035-5269131)
chr4 (32-144)||(25861868-25861980)
chr4 (263-441)||(25862085-25862269)
chr4 (263-391)||(39245899-39246028)
chr4 (224-391)||(24333717-24333880)
chr4 (278-384)||(38152517-38152623)
chr4 (50-128)||(3793932-3794010)
chr4 (263-384)||(54867096-54867218)
chr4 (32-129)||(6743250-6743345)
chr4 (54-91)||(42684974-42685011)
chr4 (80-167)||(36175236-36175321)
chr4 (257-383)||(5147590-5147717)
chr4 (193-384)||(16630675-16630865)
chr4 (359-424)||(42234512-42234574)
chr4 (193-242)||(4956232-4956281)
chr4 (50-166)||(18377489-18377604)
[»] scaffold0076 (1 HSPs)
scaffold0076 (193-480)||(15983-16265)
[»] chr6 (19 HSPs)
chr6 (38-453)||(98998-99412)
chr6 (38-441)||(33721399-33721804)
chr6 (27-454)||(1114931-1115361)
chr6 (50-441)||(31979363-31979757)
chr6 (32-346)||(24435806-24436117)
chr6 (57-441)||(10077027-10077412)
chr6 (50-184)||(14521784-14521919)
chr6 (50-177)||(31936695-31936820)
chr6 (32-144)||(5572078-5572188)
chr6 (67-242)||(30517998-30518172)
chr6 (265-391)||(22963605-22963732)
chr6 (265-391)||(23824661-23824788)
chr6 (278-384)||(5017547-5017653)
chr6 (50-129)||(21801196-21801275)
chr6 (384-441)||(31077146-31077203)
chr6 (50-428)||(18232708-18233091)
chr6 (320-384)||(4629865-4629929)
chr6 (383-454)||(27165539-27165611)
chr6 (323-391)||(30519145-30519213)
[»] scaffold0016 (1 HSPs)
scaffold0016 (38-304)||(102334-102598)
[»] chr8 (25 HSPs)
chr8 (14-341)||(31513148-31513466)
chr8 (50-218)||(7493025-7493193)
chr8 (50-177)||(19752246-19752372)
chr8 (32-218)||(3051197-3051382)
chr8 (109-305)||(9054748-9054942)
chr8 (50-441)||(5702332-5702730)
chr8 (54-97)||(33503697-33503740)
chr8 (32-384)||(4696443-4696781)
chr8 (94-307)||(8863521-8863732)
chr8 (50-347)||(23799428-23799725)
chr8 (93-218)||(5990456-5990581)
chr8 (50-146)||(28307711-28307807)
chr8 (324-390)||(11771855-11771921)
chr8 (50-128)||(26403081-26403159)
chr8 (383-428)||(5990748-5990793)
chr8 (383-440)||(9055025-9055082)
chr8 (390-454)||(7493264-7493328)
chr8 (53-225)||(14601233-14601405)
chr8 (390-477)||(8863833-8863920)
chr8 (354-405)||(32916304-32916355)
chr8 (224-384)||(26403256-26403415)
chr8 (324-383)||(28387895-28387955)
chr8 (316-398)||(34477335-34477417)
chr8 (383-431)||(28307421-28307469)
chr8 (104-218)||(34477128-34477239)
[»] chr5 (21 HSPs)
chr5 (39-424)||(5611009-5611398)
chr5 (47-244)||(30899918-30900114)
chr5 (32-178)||(28832374-28832519)
chr5 (93-181)||(2630345-2630433)
chr5 (32-218)||(11181667-11181852)
chr5 (54-441)||(42127266-42127656)
chr5 (54-446)||(34842449-34842843)
chr5 (50-428)||(17003811-17004193)
chr5 (50-177)||(31300447-31300574)
chr5 (289-428)||(3880166-3880307)
chr5 (32-144)||(19588896-19589007)
chr5 (32-166)||(24553362-24553495)
chr5 (383-428)||(2630087-2630132)
chr5 (50-144)||(10281901-10281997)
chr5 (108-183)||(6741964-6742039)
chr5 (383-421)||(28537489-28537527)
chr5 (383-480)||(30899668-30899765)
chr5 (112-206)||(33030854-33030948)
chr5 (32-128)||(11916807-11916901)
chr5 (263-384)||(24553569-24553691)
chr5 (320-384)||(12084298-12084361)
[»] chr3 (32 HSPs)
chr3 (39-424)||(21156296-21156685)
chr3 (50-384)||(18552726-18553058)
chr3 (32-441)||(40592606-40593020)
chr3 (61-251)||(44658345-44658536)
chr3 (85-428)||(29100033-29100371)
chr3 (50-206)||(3328198-3328355)
chr3 (29-165)||(8126761-8126895)
chr3 (124-480)||(25516791-25517153)
chr3 (50-346)||(1736145-1736442)
chr3 (32-206)||(3323515-3323689)
chr3 (50-384)||(48438126-48438461)
chr3 (1-232)||(5366114-5366348)
chr3 (51-144)||(25795931-25796024)
chr3 (32-441)||(8370313-8370724)
chr3 (100-218)||(21353639-21353757)
chr3 (50-441)||(30709630-30710028)
chr3 (32-129)||(47923728-47923824)
chr3 (32-144)||(24694990-24695101)
chr3 (365-441)||(47924028-47924106)
chr3 (32-178)||(1417315-1417460)
chr3 (50-128)||(3715843-3715921)
chr3 (132-346)||(4386851-4387065)
chr3 (32-384)||(26298900-26299250)
chr3 (323-391)||(34482106-34482174)
chr3 (84-144)||(40844801-40844861)
chr3 (57-88)||(10274589-10274620)
chr3 (50-128)||(47649737-47649815)
chr3 (50-144)||(25929237-25929332)
chr3 (323-384)||(25929556-25929617)
chr3 (320-384)||(8126613-8126677)
chr3 (263-346)||(21711173-21711257)
chr3 (320-384)||(27026857-27026920)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-428)||(14548-14964)
[»] chr7 (24 HSPs)
chr7 (32-384)||(20284001-20284351)
chr7 (50-206)||(5817122-5817278)
chr7 (50-384)||(29159715-29160050)
chr7 (157-346)||(28617184-28617372)
chr7 (50-384)||(55860-56194)
chr7 (52-391)||(2647551-2647888)
chr7 (60-215)||(3047335-3047489)
chr7 (32-206)||(23402848-23403022)
chr7 (32-177)||(9185009-9185153)
chr7 (32-177)||(9189842-9189986)
chr7 (50-177)||(2580508-2580635)
chr7 (32-206)||(9235417-9235591)
chr7 (33-441)||(49091512-49091924)
chr7 (50-384)||(4796520-4796852)
chr7 (54-180)||(45685601-45685727)
chr7 (50-384)||(33332302-33332635)
chr7 (52-250)||(761219-761416)
chr7 (263-428)||(9190071-9190241)
chr7 (32-130)||(46516140-46516237)
chr7 (263-391)||(46516373-46516502)
chr7 (323-480)||(27984294-27984460)
chr7 (316-390)||(23575488-23575564)
chr7 (93-146)||(27984633-27984686)
chr7 (320-428)||(9185284-9185396)
[»] scaffold0006 (2 HSPs)
scaffold0006 (50-384)||(5595-5930)
scaffold0006 (32-384)||(2404-2756)
[»] scaffold0036 (1 HSPs)
scaffold0036 (320-441)||(85535-85659)
[»] scaffold0148 (1 HSPs)
scaffold0148 (248-391)||(10634-10778)
[»] scaffold0078 (1 HSPs)
scaffold0078 (50-184)||(23643-23777)


Alignment Details
Target: chr1 (Bit Score: 548; Significance: 0; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 8281612 - 8281025
Alignment:
Q  1 ttagggttgggcatctttgatgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8281612 ttagggttgggcatctttgatgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaaact 8281513  T
Q  101 tcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  8281512 tcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataattgatagaaattagaatttgttctttgtgagcgattatgttaatttct 8281413  T
Q  201 tgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggt 300  Q
    |||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281412 tgtaacatatttgtatcattcttatcatagtggatcagagagttattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggt 8281313  T
Q  301 gtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttgcttgagact 400  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281312 gtgttgtctccttcccttcttgcttatctctgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttgcttgagact 8281213  T
Q  401 actttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaacataattcaatataatcgtata 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8281212 actttattcattgattactatttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaacataattcaatataatcgtata 8281113  T
Q  501 tatcaatatcatgttgcgtcaactgtcaaacacaaacttgtgtctaacactgcgatccgcctaatttgagaagaatatatgtgcttca 588  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8281112 tatcaatatcatgttgcgtcaattgtcaaacacaaacttgtgtccaacactgcgatccgcctaatttgagaagaatatatgtgcttca 8281025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 79 - 463
Target Start/End: Original strand, 35109418 - 35109797
Alignment:
Q  79 ttagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttcttt 178  Q
    |||||||||| |||||||| ||||||||||| ||||||| | |||||||||||||||| | ||||||| || | ||| |||||||||   ||||||||||    
T  35109418 ttagaggaaggataaaaaagcttcctttagtattttctcgtaggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttcttt 35109517  T
Q  179 gtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatc 278  Q
    ||||||   || | |||||||||||||| ||||||||||  ||||||||||||| ||| |||||||  |||||  |||| | | |||||||||||| | |    
T  35109518 gtgagcttttaagctaatttcttgtaacctatttgtatctatcttatcatagtggatcagagagcttgtctct--cctc-agattaggtcattttggacc 35109614  T
Q  279 gaactgggtaaacaatgttggtgtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggt 378  Q
     ||||| ||||||||| | |||||||||| || ||| |||||| ||| |||||||| |||| ||||||| | || ||||| | |  ||||||||||||||    
T  35109615 aaactgagtaaacaatatcggtgtgttgtttctttctcttctttcttctctttgtttctttaattatgtttgtggtgttgttccgcacttagatctaggt 35109714  T
Q  379 ctgtttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattatt 463  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||  |||||||||||||||| ||||||| | ||||||    
T  35109715 ctgtttgttgttgcttgagactactt--tgcattgattactacttcctttcctctacacatctaagttttattggtgtgattatt 35109797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 38 - 479
Target Start/End: Complemental strand, 10997216 - 10996771
Alignment:
Q  38 gttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaat--aaaaaatcttcctttagtg-ttttctctttggattcattgtgag 134  Q
    |||||||| ||||| |||||||||||| |||||| || ||||||||||||  ||  |||||| |||||||||||| |||||| || |||||||  |||||    
T  10997216 gttgggaaacatttttaaacaccttggatagtgaaatgtcattagaggaatgataaaaaaaagcttcctttagtgtttttcttttaggattcaacgtgag 10997117  T
Q  135 tgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaa 234  Q
    || ||||||||| || ||||| ||||||||||  |||||| ||||| | |   || |||||||||||||||||||||||||||| ||||||  ||||| |    
T  10997116 tgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaagttaatttcttgtaacatatttgtatcactcttat--tagtgga 10997019  T
Q  235 tcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctcctt-------cccttcttgcttat 327  Q
    ||  ||||    |  |||||  | | ||||||||||| |  | ||||||||||||||||| |||||||||||| |  ||       |  || ||  ||||    
T  10997018 tcaaagag----ttgctttcaccaagagtaggtcattctaaaccgaactgggtaaacaatattggtgtgttgtttaattttctccactttttttttttat 10996923  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttgcttgagactactttattcattgattactacttcctt 427  Q
    ||| |||||| ||| | ||  | || |||||||||| |||||  | |||| || ||||||||  |||||| ||||||||||||||||||||||||| |||    
T  10996922 cttcgttgctatgaatctgcatgtggtgttgcttcacacttaattttaggactatttgttgtaccttgaggctactttattcattgattactactttctt 10996823  T
Q  428 taatctacacatctaagttctattggtattattattagtttgaattcacaac 479  Q
    || |||||| || |||||| ||||||| | ||| || ||| |||||||||||    
T  10996822 tactctacatatgtaagttttattggtgtgattgtttgttcgaattcacaac 10996771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 65 - 428
Target Start/End: Original strand, 32736864 - 32737229
Alignment:
Q  65 gtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaatt 164  Q
    |||||||||||||||||||||||  || |||   |||||||||| |||||||||| ||||||||||||||||  | |||||| || ||||| ||||||||    
T  32736864 gtagtgagatctcattagaggaatgatcaaatc-cttcctttagggttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaatt 32736962  T
Q  165 agaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagta 264  Q
    ||  |||||||||| ||| |   || | |||||| ||||||| | |||||||||   | ||||||||  ||| ||||| |  ||||| |||  || ||||    
T  32736963 agggtttgttctttatgaacttttaagctaattttttgtaacctctttgtatcaccttcatcatagttgatcagagagtttctctctctcc--cagagta 32737060  T
Q  265 ggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcc-cttcttgcttatctttgttgctttgattatgtgtctgatgttgcttca 363  Q
    |||||||||| ||||| ||| ||| ||||| || |||| | || | ||| | |||||| ||| || |||| ||||||||||| | | || ||||||||||    
T  32737061 ggtcattttggatcgatctgagtacacaatatttgtgtctagttttctttctcttctttcttttcattgtagctttgattatatttgtggtgttgcttca 32737160  T
Q  364 tacttagatctaggtctgt----ttgttgttgcttgagactactttattcattgattactacttccttt 428  Q
     ||||||||||| ||||||    ||||||||||||||| |||||||  |||||||| || |||||||||    
T  32737161 cacttagatctaagtctgtttcgttgttgttgcttgaggctactttgctcattgatcaccacttccttt 32737229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 918336 - 918514
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggt-gacttaaataa 152  Q
    ||||| ||||||||||||||||||||||||||||| ||  |||| ||||| ||| ||||||||||| |||||||||||| ||  | || || || || ||    
T  918336 aaacatcttgggtagtgagatctcattagaggaagcat-caaaagcttccattattgttttctcttaggattcattgtgggtttgagtggaattgaaaaa 918434  T
Q  153 tggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtg 232  Q
    ||| |||||||||   |||||||||||||||    || | ||||||||||||| || ||||||||| |||||||||||||    
T  918435 tgggtagaaattatggtttgttctttgtgagtttgtaagataatttcttgtaatatctttgtatcactcttatcatagtg 918514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 391
Target Start/End: Complemental strand, 29652058 - 29651716
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt---gagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || |||||  ||||||| |||||||||||| ||||||||| |   ||||| |||||||      
T  29652058 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagtttccttttgtgttttctcttaggattcattattgagagtgtgggtgacac 29651959  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    |||  |||| ||||||||||   |||||||| ||| |||  ||| |||||||||||||||    |||||| || | | ||||||||| || |||| |||     
T  29651958 aaa--atgggtagaaattaggtcttgttcttgtgtaagcttataagttaatttcttgtaattcttttgtaacactttcatcatagtggattggagtgctg 29651861  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
     |||||  || ||| | |||||||| ||| | |||||||||| || ||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||    
T  29651860 ctctct--cccccagattaggtcatattggaccgaactgggtcaaaaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 29651763  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    ||  | || |||||||  | ||||||||||| |||||||| ||||||    
T  29651762 tgcttgtggtgttgctctacacttagatctaagtctgttttttgttg 29651716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 50 - 344
Target Start/End: Original strand, 47703787 - 47704081
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--attgtgagtgcgggtgactta 147  Q
    ||||||||||||||||||||||||| |||  |  ||||  |||||||| |||||||| |||||||||||| ||||||  |||||||| | |||||||  |    
T  47703787 ttgtaaacaccttgggtagtgagatttcaccattggaatgataaaaaaacttccttttgtgttttctcttaggattcatattgtgagagtgggtgac--a 47703884  T
Q  148 aataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctat 246  Q
     | ||||| ||||||||||   |||||||| ||| |||   || | |||||||||||||    |||||| || | | ||||||||| || |||||||  |    
T  47703885 caaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaattcttttgtaacactttcatcatagtggattggagagc--t 47703982  T
Q  247 tctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
     |||| ||| ||| | |||||||| ||| | |||||||||| |||||| |||||||||| | ||||| | ||| |||||||||||| ||||||||||||    
T  47703983 gctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgttttttcctttctttcattgcttatctttattgctttgatta 47704081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 22819693 - 22819506
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtttt--ctctttggattcatt 129  Q
    ||||| |||||||| |||| |||||||||||||||||| | || |||  |  ||||| || ||||| |||||||| |||||||  ||||| |||||||||    
T  22819693 tcttgggttgggaaacatt-gtaaacaccttgggtagttacatttcaccattggaaggatcaaaaagcttccttttgtgttttttctcttaggattcatt 22819595  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatca 218  Q
    | ||||| ||||||||| || ||||| |||||||||    || |||||||||||| || | | ||||||||||||||  ||||||||||    
T  22819594 gagagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgtgagctaaaaagctaatttcttgtaactcatttgtatca 22819506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 441
Target Start/End: Original strand, 47098660 - 47099070
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| ||||||| |||| || |||||||     
T  47098660 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttttcttaggtttcattga 47098758  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatag 230  Q
    ||||| ||||||  | || ||||| |||||||||| | |||||| ||||| |||  ||| | |||||||||||||| |  ||||| || | | ||| |||    
T  47098759 gagtgtgggtgatgtgaa-aatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac-tcattgtaacactttcatcttag 47098856  T
Q  231 tgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttccctt-cttgcttatct 329  Q
    || || |||| ||  | |||| ||| ||| | | |||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||  ||||||||||    
T  47098857 tggattggagggc--tgctctctcccccagattcggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttgattgcttatct 47098954  T
Q  330 ttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt----ttgttgttgctt-gagactactttattcattgattactacttc 424  Q
    || |||||||||||||   | || |||||||  | |||||||| |||||||||    |||||||| ||| ||||| |||||||  ||||||||| |||||    
T  47098955 ttattgctttgattatacttgtggtgttgctctacacttagatttaggtctgttttgttgttgttacttggagac-actttatctattgattaccacttc 47099053  T
Q  425 ctttaatctacacatct 441  Q
    ||||  || ||||||||    
T  47099054 ctttgctccacacatct 47099070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 40816668 - 40816762
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgac 144  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| |||||||    
T  40816668 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattgagagtgtgggtgac 40816762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 384
Target Start/End: Original strand, 47102674 - 47103026
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||| |  ||||| || ||||| ||| |||| ||||||| |||| ||||||||||     
T  47102674 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcatcattggaaggatcaaaaagctttcttttgtgttttttcttaggattcattga 47102772  T
Q  132 gagtgcgggtgacttaaataatgg--atagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    ||||| | ||||  | || |||||  ||||||||||| | |||||| |||||  ||  ||| |||||||||||||||| |  ||||| |||| | ||| |    
T  47102773 gagtgtgagtgatatgaaaaatgggtatagaaattaggacttgttcttttgtatgcttataagttaatttcttgtaac-tcattgtaacattttcatctt 47102871  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttccctt-cttgcttat 327  Q
    |||| || |||  ||  | |||| ||| | | | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||  ||||||||    
T  47102872 agtggattggatggc--tgctctctcccctagattaggtcatattggaccgaactgggtcaacaattttggtgtgtttgttcctttctttgattgcttat 47102969  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||| |||||||||||||   | || |||||||  | |||||||| |||||||||||    
T  47102970 ctttattgctttgattatacttgtggtgttgctctacacttagatttaggtctgttt 47103026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 428
Target Start/End: Original strand, 16124349 - 16124751
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc---at 128  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||   ||    
T  16124349 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattat 16124447  T
Q  129 tgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatca 227  Q
    ||  |||| |||| ||  | | ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||    
T  16124448 tgaaagtgtgggtaac--acaaaatgggtagaaattaggtcttgttcttatgtaagcttataagctaatttcttgtaactcttttgtaacactttcatca 16124545  T
Q  228 tagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttccctt--cttgctt 325  Q
    ||||| || |||| ||  | |||| ||| ||| | |||||||| ||| | ||||||| || |||||| ||||||||||   |||||  |||   | ||||    
T  16124546 tagtggattggagggc--tgctctctcccccagattaggtcatattggaccgaactgagtcaacaatcttggtgtgtttgttccttttctttcatagctt 16124643  T
Q  326 atctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgcttgagac-tactttattcattgattact 419  Q
    |||||| ||||||||||||||| | || |||||||  | | ||||||||||||||||     ||||||||||||| |||  | ||||||||||||||||     
T  16124644 atctttattgctttgattatgtttgtggtgttgctctacatttagatctaggtctgtttttgttgttgttgcttg-gacacattttattcattgattacc 16124742  T
Q  420 acttccttt 428  Q
    |||||||||    
T  16124743 acttccttt 16124751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 17345424 - 17345536
Alignment:
Q  103 ctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttg 202  Q
    |||| ||||||||||||  ||||||||  ||||| |||||||||||| ||||| ||||||||||  ||||||||||||| ||   |||| ||||||||||    
T  17345424 cttttgtgttttctcttaagattcattaagagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgtgggctcttatgctaatttcttg 17345523  T
Q  203 taacatatttgta 215  Q
    || || |||||||    
T  17345524 tagcacatttgta 17345536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 13598645 - 13598310
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat---tgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||   || ||||| |||||||      
T  13598645 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatcattgagagtgtgggtgacac 13598546  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    |||  |||  |||||||||    |||||||| ||| |||  ||| | |||||||||||| |   |||||| || | | ||||||||| || | || |||     
T  13598545 aaa--atgagtagaaattaagtcttgttcttgtgtaagcttataagctaatttcttgtatctcttttgtaacactttcatcatagtggattgaagggctg 13598448  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
     |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||    
T  13598447 ctctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 13598350  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||  | || |||| ||  | ||||||||||||||||||||    
T  13598349 tgcttgtggtgtttctctacacttagatctaggtctgttt 13598310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 11031309 - 11031412
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtg-ttttctctttggattcattg 130  Q
    ||||| |||||||| |||||||||||||| |||||||||||   ||||||  ||||| || ||||| |||||||||||| ||||||||| |||| |||||    
T  11031309 tcttgggttgggaaacatttgtaaacaccgtgggtagtgag--ttcattattggaaggatcaaaaagcttcctttagtgtttttctcttaggatacattg 11031406  T
Q  131 tgagtg 136  Q
    ||||||    
T  11031407 tgagtg 11031412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 50 - 428
Target Start/End: Complemental strand, 19073173 - 19072789
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattca-ttgtgagtgcgggtgacttaa 148  Q
    ||||||||||||||| ||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| || |||| ||| ||||| | |||||  |     
T  19073173 ttgtaaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgagtgac--ac 19073076  T
Q  149 ataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctatt 247  Q
    | ||||| ||||||||||   |||||| ||||| |||  ||| | ||||||||||||||   |||||| || | | ||| ||||| || |||||||  |     
T  19073075 aaaatgggtagaaattaggtattgttcttttgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcttagtggattggagagc--tg 19072978  T
Q  248 ctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat-gttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
    |||| ||| ||| | |||||||| ||| | |||||||||| ||||||  ||||||||||   ||||| | ||| |||||||||||| ||| |||||||||    
T  19072977 ctctctcccccagattaggtcatattggaccgaactgggtcaacaatctttggtgtgtttgttcctttctttcattgcttatctttattgttttgattat 19072878  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctg------tttgttgttgctt-gagactactttattcattgattactacttccttt 428  Q
    |  | || |||||||  | |||||||| ||||||||       |||||||||||| ||||| |||||||  |||||||||||||||||||    
T  19072877 gcttgtggtgttgctctacacttagatttaggtctgatttttgttgttgttgcttcgagac-actttatctattgattactacttccttt 19072789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 50 - 428
Target Start/End: Complemental strand, 19121063 - 19120679
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattca-ttgtgagtgcgggtgacttaa 148  Q
    ||||||||||||||| ||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| || |||| ||| ||||| | |||||  |     
T  19121063 ttgtaaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatttgagagtgtgagtgac--ac 19120966  T
Q  149 ataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctatt 247  Q
    | ||||| ||||||||||   |||||| ||||| |||  ||| | ||||||||||||||   |||||| || | | ||| ||||| || |||||||  |     
T  19120965 aaaatgggtagaaattaggtattgttcttttgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcttagtggattggagagc--tg 19120868  T
Q  248 ctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat-gttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
    |||| ||| ||| | |||||||| ||| | |||||||||| ||||||  ||||||||||   ||||| | ||| |||||||||||| ||| |||||||||    
T  19120867 ctctctcccccagattaggtcatattggaccgaactgggtcaacaatctttggtgtgtttgttcctttctttcattgcttatctttattgttttgattat 19120768  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctg------tttgttgttgctt-gagactactttattcattgattactacttccttt 428  Q
    |  | || |||||||  | |||||||| ||||||||       |||||||||||| ||||| |||||||  |||||||||||||||||||    
T  19120767 gcttgtggtgttgctctacacttagatttaggtctgatttttgttgttgttgcttcgagac-actttatctattgattactacttccttt 19120679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 428
Target Start/End: Original strand, 27104367 - 27104602
Alignment:
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaaca 292  Q
    ||||||||||||||   |||||| || | | ||||||||| || ||||||||  |||||  || ||| | ||||| || ||| | ||||||| || ||||    
T  27104367 taatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctctct--cccccagattaggttatattggaccgaactgtgtcaaca 27104464  T
Q  293 atgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctg-tttgttgtt 390  Q
    || ||||||||||   |||||   ||| |||||||||||| ||||||||||||||  | || |||||||  | |||||||| |||||||| |||||||||    
T  27104465 atcttggtgtgtttgttcctttatttcattgcttatctttattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttttgttgtt 27104564  T
Q  391 gctt-gagactactttattcattgattactacttccttt 428  Q
    |||| ||||| |||||||  ||||||||| |||||||||    
T  27104565 gcttggagac-actttatctattgattaccacttccttt 27104602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 48382607 - 48382663
Alignment:
Q  324 ttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtct 380  Q
    |||||||||||||||| ||||||| | || |||||||||| ||||||||||||||||    
T  48382607 ttatctttgttgctttaattatgtttgtggtgttgcttcacacttagatctaggtct 48382663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 6354261 - 6354300
Alignment:
Q  49 tttgtaaacaccttgggtagtgagatctcattagaggaag 88  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  6354261 tttgtaaacactttgggtagtgagatctcattagaggaag 6354300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 48382346 - 48382389
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaa 97  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  48382346 aaacaccttgggtagtgagatctcattaaaggaaggataaaaaa 48382389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 9022758 - 9022852
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgactt 146  Q
    |||||||||||||  |||||||||| |||  |  ||||| |||||||| ||||||| |||  |||||||| |||||||||||||||| || ||||||    
T  9022758 ttgtaaacacctttcgtagtgagatttcaccattggaaggataaaaaagcttccttgagt--tttctcttaggattcattgtgagtgtggttgactt 9022852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 25116523 - 25116623
Alignment:
Q  21 tgagagttt-tttcttgtgttgggaaccatttgtaaacacctt-gggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctct 118  Q
    ||||||||| ||| ||| |||||||| ||||||||||||| || |||||||||||| ||||||   |||| || |||||  || ||||||||||||||||    
T  25116523 tgagagtttatttattgggttgggaaacatttgtaaacacattagggtagtgagatttcattatttgaaggattaaaaaaatttctttagtgttttctct 25116622  T
Q  119 t 119  Q
    |    
T  25116623 t 25116623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 32889703 - 32889558
Alignment:
Q  29 ttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    |||| ||| |||||||| |||| ||||||||||||||||||||||| |||  |  |||||  | ||||  |||| ||| |||||||||||| ||||||||    
T  32889703 tttttttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggttcaaaag-cttctttt-gtgttttctcttaggattcat 32889607  T
Q  129 tgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt 177  Q
    || ||||| ||||||  | || ||||| |||||||||| | ||||||||    
T  32889606 tgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 32889558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 15864805 - 15864726
Alignment:
Q  53 taaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtg 132  Q
    |||||| ||||||||||||||||||||||||| ||  || ||||  ||| || || |||||| |||| ||||||||||||    
T  15864805 taaacatcttgggtagtgagatctcattagagaaatgatcaaaatgctttctctattgttttttcttaggattcattgtg 15864726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 17345707 - 17345766
Alignment:
Q  383 ttgttgttgcttgagactacttt-attcattgattactacttcctttaatctacacatct 441  Q
    ||||||||||||||| ||||||| | |||||||||||||||||||||  || ||||||||    
T  17345707 ttgttgttgcttgaggctacttttactcattgattactacttcctttgctccacacatct 17345766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 27104236 - 27104322
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctt 119  Q
    ||||| |||||||| ||||  ||| |||||||||||||||||| |||  |  |||||||| ||||| |||||||| ||||||||||||    
T  27104236 tcttgggttgggaaacatta-taagcaccttgggtagtgagatttcaccattggaagaatcaaaaagcttccttttgtgttttctctt 27104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 48591013 - 48591092
Alignment:
Q  401 actttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    ||||| |||||||||||||| ||| |||| |  ||||||||||||| ||||| | | ||||||  |||||||||||||||    
T  48591013 actttgttcattgattactatttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcacaaca 48591092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 48600708 - 48600787
Alignment:
Q  401 actttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    ||||| |||||||||||||| ||| |||| |  ||||||||||||| ||||| | | ||||||  |||||||||||||||    
T  48600708 actttgttcattgattactatttcttttacttcacacatctaagttttattgatgtgattatttatttgaattcacaaca 48600787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 50521291 - 50521350
Alignment:
Q  383 ttgttgttgcttgagactacttt-attcattgattactacttcctttaatctacacatct 441  Q
    ||||||||| ||||||||||||| | ||||||||||| |||||||||| || ||||||||    
T  50521291 ttgttgttgtttgagactacttttactcattgattaccacttcctttactccacacatct 50521350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 384
Target Start/End: Complemental strand, 775706 - 775584
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||| ||||| |||||| ||| ||||||   ||||| | ||| |||||||||||| ||||||||||||||  | || |||||||     
T  775706 taggtcatattggaccgaattgggtcaacaatcttgatgtgtttgttcctttctttcattgcttatctttattgctttgattatgcttgtggtgttgctc 775607  T
Q  362 catacttagatctaggtctgttt 384  Q
     | |||||||| |||||||||||    
T  775606 tacacttagatttaggtctgttt 775584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 2210697 - 2210624
Alignment:
Q  57 caccttgggtagtgagatctcattagaggaagaataaaaaat-cttcctttagtgttttctctttggattcatt 129  Q
    |||||||||||||||||||||||||||| ||  || ||||||  || ||||| ||||||||||| | |||||||    
T  2210697 caccttgggtagtgagatctcattagagaaatgatcaaaaatgttttctttattgttttctcttagaattcatt 2210624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 423
Target Start/End: Original strand, 9023956 - 9024059
Alignment:
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttg---ttgcttgagactactttattcattgattact 419  Q
    ||||||||| |||| |||||||||  | || |||||||  | |||||||| ||||| |||||||||   ||||||| | ||||||||| ||||||||||     
T  9023956 cttatctttattgcattgattatgcttgtggtgttgctatacacttagatttaggtatgtttgttgttattgcttggggctactttatccattgattacc 9024055  T
Q  420 actt 423  Q
    ||||    
T  9024056 actt 9024059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 9476295 - 9476211
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatg 346  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| ||| |||||||| ||||||||||||||    
T  9476295 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatcttttttgctttgattatg 9476211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 28770577 - 28770964
Alignment:
Q  1 ttagggttgggcatctttgatgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatct 100  Q
    ||||||||| |  |||||| |||| ||||||||||  ||||| || ||||||||||||||||||||||||||||||||||||  |||| ||||||||  |    
T  28770577 ttagggttgagtgtctttggtgagtgttttttctttggttggaaaacatttgtaaacaccttgggtagtgagatctcattagctgaaggataaaaaagtt 28770676  T
Q  101 tcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttct 200  Q
    ||||||||||||||||||| |||||||||| ||||| |  |||||| || ||||| ||||||||||| ||||||||||||||||   || | ||||||||    
T  28770677 tcctttagtgttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggtagaaattagagtttgttctttgtgagcttttaagctaatttct 28770776  T
Q  201 tgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtca-ttttgcatcgaactgggtaaacaatgttgg 299  Q
    ||||| || ||||||||||||||||| ||| | ||||||||||  | |||| ||||||| ||||||||| ||||  | || | | |||||| ||| ||||    
T  28770777 tgtaatatctttgtatcattcttatcgtagaggatcggagagc--tgctctatcctccagagtaggtcatttttagaccgta-taggtaaaaaatattgg 28770873  T
Q  300 tgtgttgtctcc-ttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgt 389  Q
    ||| |||| ||| ||| ||||||  |||| ||| ||||||||||||||  | || |||||||||| |||||||||||||||| ||||||||    
T  28770874 tgtcttgtttcctttctcttctttattatattttttgctttgattatgcttgtggtgttgcttcacacttagatctaggtctatttgttgt 28770964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 3278293 - 3277908
Alignment:
Q  1 ttagggttgggcatctttgatgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatct 100  Q
    ||||||||| | ||| |||||||||| || | |||| ||||| || |||||||||||||||||| ||||||||| |||||| |||| | || ||||| ||    
T  3278293 ttagggttgagtatcgttgatgagagattct-cttgggttggaaaacatttgtaaacaccttggatagtgagatttcattataggacggatcaaaaaact 3278195  T
Q  101 tcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttct 200  Q
    |||||||| |||||||||| || ||||||||||||| | |||| || || ||||   ||||||  |||||||||| |||||||    || | ||||||||    
T  3278194 tcctttagcgttttctcttagggttcattgtgagtgtgagtgaattgaaaaatgagaagaaatcggaatttgttc-ttgtgaggttttaagctaatttct 3278096  T
Q  201 tgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggt 300  Q
    | |||| | ||| ||||||||| ||||||||  |||| || |  || |||| ||||||| |||||||||||||| |  ||| || ||||||||||||| |    
T  3278095 tataacctcttt-tatcattctcatcatagtagatcgaagtg--atgctctctcctccatagtaggtcattttggacggaaatgagtaaacaatgttgat 3277999  T
Q  301 gtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    ||||| | ||| || ||| || ||||||||| ||||||||| ||||| | |  |||||||||| |||||||||||| ||| ||||||||||    
T  3277998 gtgttttttccctctcttatttcttatcttttttgctttgaatatgtttgtagtgttgcttcacacttagatctagatctatttgttgttg 3277908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 50 - 391
Target Start/End: Original strand, 2869544 - 2869886
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    |||||||||| |||||||||||||| ||   |  |||||||| ||||| ||||| ||||||||||||||| |||||||||| ||||| ||||||||| ||    
T  2869544 ttgtaaacacattgggtagtgagatttcgccattggaagaatcaaaaagcttccgttagtgttttctcttaggattcattgagagtgtgggtgacttgaa 2869643  T
Q  150 taatggatagaaatta-gaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| ||||||||| |  ||||||||||||||||   || | ||||||||||||||   ||||||||| | | ||| ||||| || |||||||||  |    
T  2869644 aaatgggtagaaattaggtttttgttctttgtgagcttttaagctaatttcttgtaactcctttgtatcactttcatcttagtggattggagagcta--c 2869741  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtg-ttgtctccttccctt-cttgcttatctttgttgctttgattatg 346  Q
    ||| ||| | | |||||||||| ||| | ||||||||||||||||| |||||||| ||||   ||||| ||  |||||||||||||||||||||| ||||    
T  2869742 tctctcccctagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttctcttcctttatttgcttatctttgttgctttgaatatg 2869841  T
Q  347 tgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
      | || |||||||  | |||||||| ||||||| ||||||||||    
T  2869842 cttatggtgttgctctacacttagatttaggtctatttgttgttg 2869886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 18674216 - 18674447
Alignment:
Q  14 tctttgatgagagtttt-ttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtt 112  Q
    |||||| |||||||||  |||||| |||||||| |||| |||||||||||| | |||||||| ||||||  | ||| || ||||| ||||||||| ||||    
T  18674216 tctttggtgagagtttaattcttgggttgggaaacattcgtaaacaccttgagcagtgagatttcattattg-aaggatcaaaaagcttcctttaatgtt 18674314  T
Q  113 ttctctttggattcattg-tgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatt 211  Q
    |||||||  ||||||||  |||||| ||||||||| || |||||||||||||||   ||||||||||||||||   ||   ||||||||||||||   ||    
T  18674315 ttctcttatgattcatttatgagtgtgggtgacttgaaaaatggatagaaattatggtttgttctttgtgagcttttaaactaatttcttgtaacccctt 18674414  T
Q  212 tgtatcattcttatcatagtgaatcggagagct 244  Q
     |||||| |||| |||||||  |||||||||||    
T  18674415 ggtatcactcttgtcatagtagatcggagagct 18674447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 193 - 481
Target Start/End: Original strand, 16388465 - 16388760
Alignment:
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcatttt-gcatcgaactgggtaaac 291  Q
    |||||||||||||| | ||| ||||  |||||||| |||| |  ||||||||  |||||  |||| | ||||||||||||| | | | ||||||||||||    
T  16388465 taatttcttgtaacctctttctatctctcttatcaaagtggaaaggagagctgctctct--cctctagagtaggtcatttttggaccaaactgggtaaac 16388562  T
Q  292 aatgttggtgtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgt-- 389  Q
    ||| |||||||||||| | | ||| ||||  ||||||||| ||||||||  ||||  | |  |||||||||| || || |||||||||||||||||||      
T  16388563 aatattggtgtgttgttttcctcctttctctcttatctttattgctttggatatgcttatagtgttgcttcacacatacatctaggtctgtttgttgttg 16388662  T
Q  390 -------tgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaacat 481  Q
           ||||||||||||||||| |||||||||||||||   |||  || ||||||||||||| ||||| | | |||||| |||||||||||||||||    
T  16388663 ttgctgctgcttgagactactttactcattgattactactatttttgctccacacatctaagtt-tattgatgtgattatttgtttgaattcacaacat 16388760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 305
Target Start/End: Original strand, 14698861 - 14699112
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| ||| ||  ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| |||||||  | |    
T  14698861 ttgtaaacaccttgggtagtgagatttcactattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattgagagtgtgggtgac--aca 14698958  T
Q  150 taatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| | || | ||||||||| || |||| ||  | |    
T  14698959 aaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacctt-tcatcatagtggattggagggc--tgc 14699055  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgtt 305  Q
    ||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||||||    
T  14699056 tctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtt 14699112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 15903782 - 15903876
Alignment:
Q  90 ataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagc 184  Q
    ||||||||  || |||| |||||||||| | |||||||||| ||||| ||||||||| || ||||| ||||||||||||||||||||||||||||    
T  15903782 ataaaaaagatttcttttgtgttttctcataggattcattgagagtgtgggtgacttgaaaaatgggtagaaattagaatttgttctttgtgagc 15903876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 16388355 - 16388259
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||  || ||||||||||||| ||| ||| | |||||| ||| ||||||||||||    
T  16388355 ttgttgctgcttgagactactttattcattgattactactttctttgctccacacatctaagtt-tatcggtgtgattatttgttcgaattcacaaca 16388259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 32 - 441
Target Start/End: Original strand, 33528459 - 33528868
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| |||||||| |||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||| |    
T  33528459 tcttgggttgggaaacatt-gtaaacacattgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattat 33528557  T
Q  132 ---gagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
       ||||  |||||||  |||  |||| ||||||||||   ||||||||    |||  ||| | ||||||||||||||   |||||| || | | |||||    
T  33528558 tgagagtttgggtgacacaaa--atgggtagaaattaggtcttgttctt----agcttataagctaatttcttgtaactcttttgtaacactttcatcat 33528651  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttat 327  Q
    |||| || |||| | |  |||||||||  || | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| ||| ||||    
T  33528652 agtggattggagggttgctctctttcc--catattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttat 33528749  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt-----gttgttgcttgagactactttattcattgattactact 422  Q
    |||| ||||||||||||||  | || |||||||  | | ||||||||||||||||||     ||||||||||| |   ||||||| |||||||||| |||    
T  33528750 ctttattgctttgattatgcttgtggtgttgctctacatttagatctaggtctgtttttgttgttgttgcttggggacactttatccattgattaccact 33528849  T
Q  423 tcctttaatctacacatct 441  Q
    ||||||  || ||||||||    
T  33528850 tcctttgctccacacatct 33528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 32 - 391
Target Start/End: Complemental strand, 13569591 - 13569234
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat--t 129  Q
    ||||| |||||||| ||||  |||||||||||| ||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||  |    
T  13569591 tcttgggttgggaaacatta-taaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatatt 13569493  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    ||||| | |||||||  ||| || || ||||||||||   |||||||| ||| | |  ||| | ||||||||||||||   |||||| || | | |||||    
T  13569492 gtgagagtgggtgac--aaacaaagggtagaaattaggtcttgttcttgtgtaaacttataagctaatttcttgtaactcttttgtaacactttcatcat 13569395  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttat 327  Q
    |||| || ||||||||  |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| ||| ||||    
T  13569394 agtggattggagagctgctctct--cccccagattaggtcatattggaccgaactgggtcaacaattttggtgtgtttattcctttctttcattgattat 13569297  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    |||||| ||||||||||||  | || |||| ||  ||||||||||||| | |||||| ||||||    
T  13569296 ctttgt-gctttgattatgcttgtggtgtttctctatacttagatctaagcctgttttttgttg 13569234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 33118380 - 33118048
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| ||   |  ||||| || ||||| |||||||| ||||||||||||  ||||||||| ||||| |||||||  | |    
T  33118380 ttgtaaacaccttgggtagtgagatttcgccattggaaggatcaaaaagcttccttttgtgttttctcttaagattcattgagagtgagggtgac--aca 33118283  T
Q  150 taatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| |||||||||    |||||||| ||| |||  ||| | ||||||||||||||   |||||| |  | | ||||||||| || |||| ||  | |    
T  33118282 aaatgggtagaaattaagtcttgttcttgtgtaagcttataagctaatttcttgtaactattttgtaactctttcatcatagtggattggagggc--tgc 33118185  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgt 347  Q
    ||| ||| ||||| |||||||| ||| | ||||||| |  |||||| ||||||||||   ||||| | ||| |||||||||||| || |||||||||||     
T  33118184 tctctcccccaaattaggtcatattggaccgaactgagccaacaatcttggtgtgtttgttcctttctttcattgcttatctttattactttgattatgc 33118085  T
Q  348 gtctgatgttgcttcatacttagatctaggtctgttt 384  Q
     | || |||||||  | |||||||| |||||||||||    
T  33118084 ttgtggtgttgctctacacttagatttaggtctgttt 33118048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 391
Target Start/End: Original strand, 8390001 - 8390341
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--attgtgagtgcgggtgactta 147  Q
    ||||||||||||||| ||||||||| | |  |  |||||||| ||||| |||||| | |||||||||||| ||||||  |||||||| | |||||||  |    
T  8390001 ttgtaaacaccttggatagtgagattttaccattggaagaatcaaaaagcttcctcttgtgttttctcttaggattcatattgtgagagtgggtgac--a 8390098  T
Q  148 aataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctat 246  Q
     | ||||| ||||||||||   |||||||| ||  |||   || | ||||||||||||||   ||| || || | | ||||||||| || |||||||  |    
T  8390099 caaaatgggtagaaattaggtcttgttcttgtgcaagcttgtaagctaatttcttgtaactcttttttaacactttcatcatagtggattggagagc--t 8390196  T
Q  247 tctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
     |||| ||| ||||| |||||||||||| | |||||||||| |||||| ||||||||||   || || | ||| | ||||||||||| ||||||||||||    
T  8390197 gctctctcccccaaattaggtcattttggaccgaactgggtcaacaattttggtgtgtttgttcatttctttcatcgcttatctttg-tgctttgattat 8390295  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    |  | || |||||||  | ||||||||||||||||| || ||||||    
T  8390296 gcttgtggtgttgctctacacttagatctaggtctggtttttgttg 8390341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 441
Target Start/End: Complemental strand, 31056288 - 31055892
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  | ||| || ||||| |||||||| |||||||||||| |||||||||| ||||| |||||||  | |    
T  31056288 ttgtaaacaccttgggtagtgagatttcaccattgaaaggatcaaaaagcttccttttgtgttttctcttaggattcattgagagtgtgggtgac--aca 31056191  T
Q  150 taatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| ||||||||||   |||||| ||||| |||  ||| | |||||| |||||||   |||||| || | | ||| ||||| || |||||||  | |    
T  31056190 aaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttattgtaactcttttgtaacactttcatcttagtggattggagagc--tgc 31056093  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat-gttggtgtgttgtctccttccctt--cttgcttatctttgttgctttgattat 345  Q
    ||| ||| | | | |||||||| ||| | |||||| ||| ||||||  ||||||||||   |||||  |||   |||||||||||| |||||||||||||    
T  31056092 tctctcccctagattaggtcatattgaaccgaactaggtcaacaatctttggtgtgtttgttccttttctttcattgcttatctttattgctttgattat 31055993  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacat 439  Q
    |  | || |||||||  | |||||||| |||||||||     |||||||||||| ||||| |||||||  ||||||||| |||||||||  || ||||||    
T  31055992 gcttgtggtgttgctctacacttagatttaggtctgtttttgttgttgttgcttggagac-actttatctattgattaccacttcctttgctccacacat 31055894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 384
Target Start/End: Complemental strand, 34389113 - 34388771
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--att 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||  |||    
T  34389113 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatatt 34389015  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcata 229  Q
    ||||| | |||||||  | | ||||| ||||||||||   |||||| |||||      || | ||||||||||||||   |||||| || | | ||||||    
T  34389014 gtgagagtgggtgac--acaaaatgggtagaaattaggtcttgttc-ttgtg------taagctaatttcttgtaactcttttgtaacactttcatcata 34388924  T
Q  230 gtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatc 328  Q
    ||| || |||||||||  |||| ||| ||| | |||||||| ||| | |||| ||||| |||||| | ||||||||   ||||| | ||| ||| |||||    
T  34388923 gtggattggagagcta--ctctctcccccagattaggtcatattggaccgaattgggtcaacaatctcggtgtgtttgttcctttctttctttgtttatc 34388826  T
Q  329 tttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||| |||||||||| ||  | || |||||||  | ||||||||||||||||||||    
T  34388825 tttg-tgctttgattttgcttgtggtgttgctctacacttagatctaggtctgttt 34388771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 294
Target Start/End: Original strand, 2837881 - 2838124
Alignment:
Q  50 ttgtaaacaccttgggtagtgaga-tctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaa 148  Q
    ||||||||||||||| |||||||| | |||  |  ||||| ||||||||| |||||||||||||||||||| |||||||||| ||  | ||||||| | |    
T  2837881 ttgtaaacaccttggatagtgagaatttcaccattggaaggataaaaaatattcctttagtgttttctcttaggattcattgagaaggtgggtgacatga 2837980  T
Q  149 ataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
    | |||||  | |||||||  | ||||||||||||||   | |  ||||||||||||||  |||||||||| | | ||  ||||| || |||||  | | |    
T  2837981 aaaatgggcaaaaattaggttgtgttctttgtgagctcttgtactaatttcttgtaactcatttgtatcactttcattttagtggattggaga--tgtgc 2838078  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat 294  Q
    ||| ||| ||| |||||||||| ||| | |||||||||| ||||||    
T  2838079 tctctcccccagagtaggtcatattggaccgaactgggtcaacaat 2838124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 391
Target Start/End: Complemental strand, 39483178 - 39482836
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc---attgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| |||||||||||| ||||||   |||| ||||| ||||||| |    
T  39483178 ttgtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaaacttccttttgtgttttctcttaggattcattattgagagtgtgggtgacat 39483079  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    ||  ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| |||| | ||||||||| || ||||  |      
T  39483078 aa--aatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacattttcatcatagtggattggaggcc-- 39482983  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
    | |||| ||| ||| | |||||||| ||| | |||||| ||| |||||| ||||||||||   ||||  | ||| ||| |||||||| |||||||| |||    
T  39482982 tgctctctcccccatattaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcctctctttcattgtttatctttattgctttggtta 39482883  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    ||  | || ||||| |  | |||||||| ||||||||||| ||||||    
T  39482882 tgcttgtggtgttgttctacacttagatttaggtctgttttttgttg 39482836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 21630207 - 21630111
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||    
T  21630207 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatt 21630111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 41586385 - 41586532
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| ||||| || || ||||||||||||||||||||||||| | | |||  | ||||| |||||  || ||||| ||||||||||| |||| |||| |    
T  41586385 tcttgggttggaaaacagttgtaaacaccttgggtagtgagattttactaggaggagaatcaaaaagttttctttaatgttttctcttaggatccattct 41586484  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtg 181  Q
    ||||  | ||||||| || ||| | ||||||||| | |||||||||||||    
T  41586485 gagt--gagtgacttgaaaaataggtagaaattaaagtttgttctttgtg 41586532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 17865467 - 17865371
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |   |||| || ||||| |||||||| |||||||||||| |||||||||    
T  17865467 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcacaaatagaaggatcaaaaagcttccttttgtgttttctcttaggattcatt 17865371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 428
Target Start/End: Complemental strand, 8040309 - 8039923
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtttt-ctctttggattcat--tgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| ||||||||  |||||| ||||| ||||||||  |||||| | |||||||      
T  8040309 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttatgtttttctcttaggattcatattgtgagagtgggtgacac 8040210  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacata--tttgtatcattcttatcatagtgaatcggagagc 243  Q
    |||  |||| ||||||||||   |||||||| ||| |||   || | ||||||||||||||     |||||| || | | ||||||||| || |||||||    
T  8040209 aaa--atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaactctcttttgtaacactttcatcatagtggattggagagc 8040112  T
Q  244 tattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgat 342  Q
    |  |||||  || ||| | |||||||| ||| |  ||||||||| |||||| ||| ||| || | ||||  ||||| |||||||||||| ||||||||||    
T  8040111 tgctctct--cccccagattaggtcatattggactgaactgggtcaacaatcttgatgtattttttcctctccttcattgcttatctttattgctttgat 8040014  T
Q  343 tatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgcttg-agactactttattcattgattactacttccttt 428  Q
    ||||  | || |||||||  | |||||||| |||||||||     ||||||||||||| |||| |||||||  ||||||||| |||||||||    
T  8040013 tatgcttgtggtgttgctctacacttagatttaggtctgtttttgttgttgttgcttgaagac-actttatctattgattaccacttccttt 8039923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 441
Target Start/End: Complemental strand, 20522254 - 20522070
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| || ||||||||| ||||||||||||||  | || |||||||     
T  20522254 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatttcttatctttattgctttgattatgcttgtggtgttgctc 20522155  T
Q  362 catacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacatct 441  Q
     | ||||||||||| |||| |     ||||| |||||| ||||| ||||||| |||||||||| |||||||||  || ||||||||    
T  20522154 tacacttagatctatgtctttttttgttgtttttgcttggagac-actttatccattgattaccacttccttttctccacacatct 20522070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 1345448 - 1345635
Alignment:
Q  105 ttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgta 204  Q
    |||||||||||| ||  ||||||||| ||||| ||||||| | || ||||| ||||||||||  | |||| |||||||||  || || |||||||||| |    
T  1345448 ttagtgttttcttttatgattcattgagagtgggggtgacatgaaaaatgggtagaaattaggttgtgtt-tttgtgagctcatgtgctaatttcttgca 1345546  T
Q  205 acatatttgtatcattcttatcat-agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat 294  Q
    ||  |||||||||| | | ||| | |||| |||||||||   | |||| ||| ||| |||||||||| ||| | |||||||||| ||||||    
T  1345547 actcatttgtatcactttcatcttaagtggatcggagag--gtgctctctcccccagagtaggtcatattggaccgaactgggtcaacaat 1345635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 11049487 - 11049522
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggta 67  Q
    |||||||||||||| |||||||||||||||||||||    
T  11049487 tcttgtgttgggaaacatttgtaaacaccttgggta 11049522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 27140004 - 27139853
Alignment:
Q  93 aaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgt 192  Q
    ||||| ||| ||||| |||||||| || ||||||||| || || |  ||||||| ||  |||  ||||||||||  ||||| ||||||||||    |  |    
T  27140004 aaaaagctttctttattgttttctattaggattcattttgggttcaagtgacttgaaatatgtgtagaaattagggtttgtactttgtgagctttaaatt 27139905  T
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagct 244  Q
    ||||||| |||||||| ||||||||| | || ||||||||||| ||||||||    
T  27139904 taatttcctgtaacatttttgtatcactattttcatagtgaattggagagct 27139853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 35397694 - 35397639
Alignment:
Q  111 ttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattag 166  Q
    ||||||||| |||||||||| || || ||||||||| || ||||||||||||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatggatagaaattag 35397639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 10707104 - 10707182
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    |||||||||||||||||||| |||| |||  |   |||| || ||||| |||||||| |||||||||||| ||||||||    
T  10707104 ttgtaaacaccttgggtagttagatttcaccattagaaggatcaaaaagcttccttttgtgttttctcttaggattcat 10707182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 27149207 - 27149245
Alignment:
Q  111 ttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  27149207 ttttctcttaggattcattgtgagtgtgggtgacttaaa 27149245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 23078306 - 23078400
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||| |  ||||| ||  |||| |||||||| |||| ||||||| || |||||    
T  23078306 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcatcattggaaggat-caaaagcttccttttgtgtcttctcttagggttcat 23078400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 346
Target Start/End: Original strand, 34670488 - 34670810
Alignment:
Q  21 tgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctcttt 120  Q
    |||||||||||||||| |||| ||| ||||||||| || ||||||||||||||||||||||||||||| ||  ||||  || |||||||||||||||||     
T  34670488 tgagagttttttcttgagttgagaaacatttgtaagcatcttgggtagtgagatctcattagaggaaggatctaaaagttttctttagtgttttctctta 34670587  T
Q  121 ggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcatt 220  Q
    |||||||||||||||| | ||||||| || |||||||||||||||  ||||||||||||||||| | || | |||||||||||||| | |||||| |       
T  34670588 ggattcattgtgagtgtgagtgacttgaaaaatggatagaaattatgatttgttctttgtgagctattaagctaatttcttgtaacctctttgtacc--- 34670684  T
Q  221 cttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctcctt--ccctt 318  Q
    |||||||||||| ||| ||||||  | || | |||| || |||||||||||||| | |||||||| ||||||||||  | ||||||| | |||  || ||    
T  34670685 cttatcatagtggatcagagagc--tgctatctccttcatagtaggtcattttggaccgaactggataaacaatgtatgcgtgttgttttctttcccttt 34670782  T
Q  319 cttgcttatctttgttgctttgattatg 346  Q
     || ||||||||||||||||||| ||||    
T  34670783 atttcttatctttgttgctttgaatatg 34670810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 32 - 480
Target Start/End: Complemental strand, 37782126 - 37781673
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| ||||| || |||||||||||||||||||||||||||| ||||||  |||||||| |||||   || ||||||||||||||||  ||||||||      
T  37782126 tcttgggttggaaaacatttgtaaacaccttgggtagtgagatttcattattggaagaatcaaaaagtctcttttagtgttttctcttaagattcattta 37782027  T
Q  132 -gagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatag 230  Q
     |||||  |||||||| || ||||| |||||||||  ||||||||||||||||    || | |||||||||||||| | ||||||||| | |||| ||||    
T  37782026 cgagtgtaggtgacttgaaaaatgggtagaaattaagatttgttctttgtgagtttttaagctaatttcttgtaacctctttgtatcacttttattatag 37781927  T
Q  231 tgaatcggagagctattctctttcctccaaagtaggtcat-tttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttcttgcttatct 329  Q
    || || |||||| || |||||   |||| ||||||||||| |||  | ||||||||||||||||| ||||| |||||| | ||||  || || |||||||    
T  37781926 tggattggagagttactctct---ctccgaagtaggtcatatttaaaccgaactgggtaaacaatattggtttgttgttttcttctattatttcttatct 37781830  T
Q  330 ttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtt------tgttgttgcttgagactactttattcattgattactactt 423  Q
    |||||||||||| ||||  | || |||||||||| |||||||||||||||| ||      |||||||| ||||   ||||||| ||||| || |||||||    
T  37781829 ttgttgctttgaatatgcttgtggtgttgcttcacacttagatctaggtctatttgttgatgttgttgattgatgatactttactcattaatgactactt 37781730  T
Q  424 cctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    | |||  || |||| |||||||| ||||  ||| |||||| ||||||||||||||||    
T  37781729 cttttgctccacacttctaagttttattattataattatttgtttgaattcacaaca 37781673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 873321 - 873809
Alignment:
Q  1 ttagggttgggcatctttgatgagagttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatct 100  Q
    ||||||||| |  |||||| ||| | |||||||||| |||||| | ||||||||||||||||| ||||||||||||||||||||| || || ||||| ||    
T  873321 ttagggttgagtgtctttggtgataattttttcttgggttggggaacatttgtaaacaccttgagtagtgagatctcattagagggaggatcaaaaagct 873420  T
Q  101 tcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttct 200  Q
    || ||| ||||||||||||  || | | ||||| || ||||||||  ||  |||  |||||||||| ||||||| |||| ||||   || ||||||||||    
T  873421 tcattttgtgttttctcttaagacttaatgtgactgtgggtgactcgaaatatgagtagaaattaggatttgttatttgcgagcttttaagttaatttct 873520  T
Q  201 tgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggt 300  Q
    |||||| |||| |||||||||| ||||||||| ||||||||| |  ||||||   || || ||| || ||||   | ||||||| ||||| ||| |||||    
T  873521 tgtaacctattggtatcattctaatcatagtggatcggagagttgctctctt---tctaatgtatgtaatttaaaaccgaactgagtaaataatattggt 873617  T
Q  301 gtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg--------- 391  Q
    ||||||| |||||  ||| || |||||||| |||| ||||| ||||| | || ||||| |||| |||||||| || ||| |||||||||||             
T  873618 gtgttgtttccttatcttgtttcttatcttcgttgttttgaatatgtttgtggtgttgtttcacacttagatttaagtcagtttgttgttgttgtttttg 873717  T
Q  392 ---cttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
       ||| ||||  ||||  ||||||||||| |||||| ||| |||| ||||||||||| ||||||| | |||||| |||| |||||||||||    
T  873718 tttcttaagacctctttgctcattgattacaacttccattactctatacatctaagttttattggtgtaattatttgtttaaattcacaaca 873809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 387
Target Start/End: Original strand, 42599429 - 42599762
Alignment:
Q  53 taaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataa 152  Q
    |||||||||||||||||||||| |||  |  ||||| |||||||| |||||||| |||||||||||| |||||||||| |||||||||||||  | | ||    
T  42599429 taaacaccttgggtagtgagatttcaccattggaaggataaaaaaacttccttttgtgttttctcttaggattcattgagagtgcgggtgac--acaaaa 42599526  T
Q  153 tggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctct 251  Q
    ||| ||||||||||   |||||| ||||| |||  ||| | |||||||||||||| |  ||||| |||| | ||| ||||| || |||| | |  |||||    
T  42599527 tgggtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaac-tcattgtaacattttcatcttagtggattggagggttgctctct 42599625  T
Q  252 ttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtc 350  Q
     ||| ||| | || ||||| ||| |  ||| ||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||||  |     
T  42599626 ctcccccatattatgtcatattggactgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatgcttg 42599725  T
Q  351 tgatgttgcttcatacttagatctaggtctgtttgtt 387  Q
    || |||||||  | | |||||||||||| ||||||||    
T  42599726 tggtgttgctctacatttagatctaggtttgtttgtt 42599762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 428
Target Start/End: Complemental strand, 10047643 - 10047242
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc---at 128  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| ||||||| |||| ||||||   ||    
T  10047643 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaaacttccttttgtgttttgtcttaggattcattat 10047545  T
Q  129 tgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatca 227  Q
    || ||||| |||||||  | | ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||    
T  10047544 tgagagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatca 10047447  T
Q  228 tagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgctta 326  Q
    ||||| || |||| ||  | |||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| ||| |||    
T  10047446 tagtggattggagggc--tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgttta 10047349  T
Q  327 tctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattacta 420  Q
    ||||| ||||||||||||||  | || |||||||  | ||||||||||| |||| |     ||||| |||||| ||||| ||||||| |||||||||| |    
T  10047348 tctttattgctttgattatgcttgtggtgttgctctacacttagatctatgtctatttttgttgttattgcttggagac-actttatccattgattacca 10047250  T
Q  421 cttccttt 428  Q
    ||||||||    
T  10047249 cttccttt 10047242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 5112499 - 5112366
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| ||||||||  ||||||||||| |||||||||||    
T  5112499 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttatgttttctcttaggattcattgt 5112401  T
Q  132 gagtgcgggtgacttaaataatggatagaaattag 166  Q
    ||||| | |||||||||| ||| | || |||||||    
T  5112400 gagtgtgagtgacttaaaaaataggtacaaattag 5112366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 39593974 - 39593789
Alignment:
Q  47 catttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgactt 146  Q
    |||||||||||||||||  | ||||||||||||||||||||  |  ||||| ||||||| |||| |||||||| |||||||||||| ||  | |||||||    
T  39593974 catttgtaaacaccttgaat-gtgagatctcattagaggaatgaccaaaaagcttccttgagtggtttctcttaggattcattgtgggtttgagtgactt 39593876  T
Q  147 aaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaa 234  Q
     |  || || ||||||||||  ||  |||||||||||    ||   |||||||||||||| ||||||||||| |||||||||||||||    
T  39593875 gacaaaggggtagaaattag-gttgattctttgtgagtttgtaaactaatttcttgtaacttatttgtatcactcttatcatagtgaa 39593789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 463
Target Start/End: Complemental strand, 4956157 - 4956015
Alignment:
Q  324 ttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgtt---gttgcttgagactactttattcattgattacta 420  Q
    |||||| ||||||||||||||||| | || |||||||||| ||||| |||||| || |||||||   |||||||||| || | ||  |||||||||| ||    
T  4956157 ttatctgtgttgctttgattatgtttgtggtgttgcttcacacttaaatctagatccgtttgttgttgttgcttgaggctgcattgctcattgattatta 4956058  T
Q  421 cttcctttaatctacacatctaagttctattggtattattatt 463  Q
    ||||||||  || |||  |||||||| ||||||||| ||||||    
T  4956057 cttcctttgctccacatgtctaagttatattggtatgattatt 4956015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 84 - 441
Target Start/End: Original strand, 1983187 - 1983546
Alignment:
Q  84 ggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgag 183  Q
    ||||| |||||||| |||||||| | |||||||||| |||||||||| |||||  |||||||| || || ||||||||||||   |||||||||||||||    
T  1983187 ggaaggataaaaaagcttccttttgggttttctcttaggattcattgagagtgtaggtgacttgaaaaa-ggatagaaattatgttttgttctttgtgag 1983285  T
Q  184 cgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaact 283  Q
    |    | | ||||||||||||||   ||||||||| | | ||| ||||| || |||||||  | || | ||| ||| |||||||||| ||| | ||||||    
T  1983286 cttgcaagctaatttcttgtaacccctttgtatcactttgatcctagtggattggagagc--tgctatctcccccatagtaggtcatattggaccgaact 1983383  T
Q  284 gggtaaacaatgttggtgtg-ttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt 382  Q
    ||||  || || |||||||| |||| | ||| | | ||| |||||  |||||| ||||||||||| | || || ||||| | |||||||| || ||| ||    
T  1983384 gggt-taccatattggtgtgtttgttttctttcttgctttcttat-attgttgttttgattatgtttgtggtgatgctttacacttagatttaagtcagt 1983481  T
Q  383 ------ttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatct 441  Q
          ||||||||||||||  | ||||||| ||||||||| ||||||||||  || ||||||||    
T  1983482 ttgttgttgttgttgcttgaacccactttatccattgattattacttcctttgctccacacatct 1983546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 8114679 - 8114843
Alignment:
Q  139 ggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcgg 238  Q
    |||||||| || |||||||| |||||||  |||||||||||||||   ||| || | ||||||||||| ||||| ||||||||||||||||||| || ||    
T  8114679 ggtgacttgaaaaatggatacaaattagggtttgttctttgtgagattataagtga-tttcttgtaacctatttatatcattcttatcatagtggattgg 8114777  T
Q  239 agagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgt 307  Q
    |||| | ||||||   ||| | ||||| ||||| |  | |||| | |||||||||| ||||||||||||    
T  8114778 agagttgttctct---ctcgatagtagatcattatagaccgaattaggtaaacaatattggtgtgttgt 8114843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 18912276 - 18912411
Alignment:
Q  111 ttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatat 210  Q
    ||||||||| |||||||||||| ||  | ||||||| || |||||||| || ||||  |||||||||||||||    ||   |||||||||||| | | |    
T  18912276 ttttctcttaggattcattgtgggtttgagtgacttgaaaaatggatataatttagggtttgttctttgtgagtttgtaaactaatttcttgtatccttt 18912375  T
Q  211 ttgtatcattcttatcatagtgaatcggagagctat 246  Q
    |||||||| ||||||||||||| || ||||||||||    
T  18912376 ttgtatcactcttatcatagtggattggagagctat 18912411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 39774140 - 39774325
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||| | |||  |  ||||  || ||||| |||||||| || ||||||||| ||||||||||     
T  39774140 tcttgagttgggaaacatt-gtaaacaccttgggtagtgagttttcaccattggaatgatcaaaaagcttccttttgtattttctcttgggattcattga 39774238  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgtt-ctttgtgagcgaatatgttaatttcttgtaacatatttgtatca 218  Q
    ||||| | ||||| | || | ||| ||||||||||   ||||| ||||||||||   || | |||||||||||||| |||||||||||    
T  39774239 gagtgtgagtgacatgaaaattgg-tagaaattaggtcttgtttctttgtgagcttttaagctaatttcttgtaacctatttgtatca 39774325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 429
Target Start/End: Complemental strand, 3777811 - 3777412
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--att 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| || ||||||||| ||||||  |||    
T  3777811 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaagcttccttttgtattttctcttaggattcatatt 3777713  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    ||||| | |||||||  | | ||||| |||||||||||  |||||||| ||| ||     | | || ||||||||||| | |||||| || | | |||||    
T  3777712 gtgagagtgggtgac--acaaaatgggtagaaattagatcttgttcttgtgtaagtttgcaagctattttcttgtaac-tctttgtaacactttcatcat 3777616  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttat 327  Q
    |||| || |||||||||  |||| ||||| | | ||||| || ||| | |||||||||| |||||| | ||||||||   ||||| | ||| ||||||||    
T  3777615 agtggattggagagcta--ctctctcctctagattaggttatattggaccgaactgggtcaacaatctcggtgtgtttgttcctttctttcattgcttat 3777518  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactac 421  Q
    ||||| |||||||||||||  | || | ||| |  | ||||||||||||||||||     |||||||||||| ||||| ||||||  |||||||||| ||    
T  3777517 ctttg-tgctttgattatgcttgtggttttgttctacacttagatctaggtctgtttttgttgttgttgcttggagac-actttacacattgattaccac 3777420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 24334056 - 24333978
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||    
T  24334056 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcat 24333978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 5269035 - 5269131
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||| |||||||| |||| ||||||||||||| ||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||    
T  5269035 tcttgggttgggaaacatt-gtaaacaccttggatagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatt 5269131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 25861868 - 25861980
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtg-ttttctctttggattcattg 130  Q
    ||||| |||||||| |||| |||||||||||| |||||||||| |||  |  ||||| || ||||| |||||||| ||| ||||||||| ||||||||||    
T  25861868 tcttgggttgggaaacatt-gtaaacaccttgagtagtgagatttcaccattggaaggatcaaaaaacttccttttgtgtttttctcttaggattcattg 25861966  T
Q  131 tgagtgcgggtgac 144  Q
     ||||| |||||||    
T  25861967 agagtgtgggtgac 25861980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 441
Target Start/End: Original strand, 25862085 - 25862269
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | ||||||| || |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||||  | || |||||||     
T  25862085 taggtcatattggaccgaactgagtcaacaatcttggtgtgtttattcctttctttcattgcttatctttattgctttgattatgcttgtggtgttgctc 25862184  T
Q  362 catacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacatct 441  Q
     | |||||||| |||||||||     |||||||||||| ||||| |||||||  ||||||||| |||||||||  || ||||||||    
T  25862185 tacacttagatttaggtctgtttttgttgttgttgcttggagac-actttatctattgattaccacttcctttgctccacacatct 25862269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 391
Target Start/End: Complemental strand, 39246028 - 39245899
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||| ||||||||||  | || |||||||     
T  39246028 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgttttgattatgcctgtggtgttgctc 39245929  T
Q  362 catacttagatctaggtctgtttgttgttg 391  Q
     | |||||||| ||||||||||| ||||||    
T  39245928 tacacttagatttaggtctgttttttgttg 39245899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 24333880 - 24333717
Alignment:
Q  224 atcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttg 322  Q
    ||||||||| || ||||||||  |||||  || ||||| |||||||| ||| | ||||||| || |||||| ||||||||||   | ||| | ||| |||    
T  24333880 atcatagtggattggagagctgctctct--cccccaaattaggtcatattggaccgaactgagttaacaatcttggtgtgtttgtttctttctttcattg 24333783  T
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    ||||||||| ||||||||||||||   ||  |||||||  | |||||||||||||||||||| ||||||    
T  24333782 cttatctttattgctttgattatg---cttgtgttgctctacacttagatctaggtctgttttttgttg 24333717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 38152517 - 38152623
Alignment:
Q  278 cgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctag 376  Q
    |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||||| ||||||||||||  | || |||||||  | ||||||||||||    
T  38152517 cgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttgt-gctttgattatgcttgtggtgttgctatacacttagatctag 38152615  T
Q  377 gtctgttt 384  Q
    ||||||||    
T  38152616 gtctgttt 38152623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 3793932 - 3794010
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||||||||||||||||||||||| |||  | || ||| || ||||| |||||||| |||||| ||||| ||||||||    
T  3793932 ttgtaaacaccttgggtagtgagatttcaccatagaaaggatcaaaaagcttccttttgtgtttgctcttaggattcat 3794010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 384
Target Start/End: Complemental strand, 54867218 - 54867096
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| || |||||||||||  | || |||||||     
T  54867218 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattactttgattatgcttgtggtgttgctc 54867119  T
Q  362 catacttagatctaggtctgttt 384  Q
     | ||||||||||| ||||||||    
T  54867118 tacacttagatctatgtctgttt 54867096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 6743250 - 6743345
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||| |||||||| |||| |||||||||||||||| |||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||    
T  6743250 tcttgggttgggaaacatt-gtaaacaccttgggtaatgagatttcaccattggaaggatcaaaaa-cttccttttgtgttttctcttaggattcatt 6743345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 42684974 - 42685011
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaat 91  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42684974 aaacaccttggatagtgagatctcattagaggaagaat 42685011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 36175321 - 36175236
Alignment:
Q  80 tagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattaga 167  Q
    ||||||||| || ||| | ||||||||| ||||||||| | |||||||||||||||  | |||||||| | ||||| |||||||||||    
T  36175321 tagaggaaggatcaaacaacttcctttaatgttttctcataggattcattgtgagt--gtgtgacttagaaaatgggtagaaattaga 36175236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 383
Target Start/End: Complemental strand, 5147717 - 5147590
Alignment:
Q  257 ccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatg 355  Q
    ||||| |||||||| ||| | |||||||||| |||||| | ||||||||   ||||| | ||| |||||||||| | ||| ||||||||||| | || ||    
T  5147717 ccaaattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttgttcctttctttcattgcttatctctattgttttgattatgtttgtggtg 5147618  T
Q  356 ttgcttcatacttagatctaggtctgtt 383  Q
    |||||  | |||||||| ||||||||||    
T  5147617 ttgctctacacttagatttaggtctgtt 5147590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 384
Target Start/End: Original strand, 16630675 - 16630865
Alignment:
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaaca 292  Q
    ||||||||||||||   |||||| || | | ||||||||| || |||||||| ||||||  |||||| | || ||||| ||| | |||||| ||| ||||    
T  16630675 taatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgttctct--cctccagattatgtcatattggaccgaactaggtcaaca 16630772  T
Q  293 atgttggtgtgttgtctccttcccttc--ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |  ||||||||||   |||||  |||   ||||||||||||||| |||||||||||  | || |||||||| | |||||||||||||| |||||    
T  16630773 accttggtgtgtttgttccttttctttcattgcttatctttgtt-ctttgattatgcttgtggtgttgctttacacttagatctaggtttgttt 16630865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 424
Target Start/End: Original strand, 42234512 - 42234574
Alignment:
Q  359 cttcatacttagatctaggtctgtttgttgttgcttgagactactttattcattgattactacttc 424  Q
    ||||| |||||||||||||| |||| |||||||||||| ||||||||| |  ||||||||||||||    
T  42234512 cttcacacttagatctaggtatgtt-gttgttgcttgaaactactttaat--ttgattactacttc 42234574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 4956281 - 4956232
Alignment:
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagag 242  Q
    |||||||||||||| | ||| ||||||||||||||||||| || ||||||    
T  4956281 taatttcttgtaacctctttttatcattcttatcatagtggattggagag 4956232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 18377604 - 18377489
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    |||||||| ||||||||| |||||| | |  |  ||||| || ||||| |||| ||| ||||||| |||| ||||||||||| |||| ||||||| | ||    
T  18377604 ttgtaaaccccttgggtaatgagattttaccattggaaggatcaaaaagcttcattttgtgttttttcttaggattcattgtaagtgtgggtgacatgaa 18377505  T
Q  150 taatggatagaaattag 166  Q
     ||||| ||||||||||    
T  18377504 -aatgggtagaaattag 18377489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 193 - 480
Target Start/End: Original strand, 15983 - 16265
Alignment:
Q  193 taatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaaca 292  Q
    |||||||||||||||| ||||||| | ||||||||||||| ||  ||| | | |||||||  ||||| ||||| | |||||| | ||||||||||||| |    
T  15983 taatttcttgtaacatctttgtataactcttatcatagtggattagagtgttgttctctt--ctccatagtagattattttggaccgaactgggtaaata 16080  T
Q  293 atgttggtgtgttgtctc-cttcccttcttgctt-atctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgtt 390  Q
    || |||||||||||| |  ||||| ||||  ||| |||||||||||||||| ||||| | || ||||| |||| ||||||||||||||   |||||||||    
T  16081 atattggtgtgttgtttttcttcctttctctctttatctttgttgctttgaatatgtttgtggtgttgtttcacacttagatctaggtaaatttgttgtt 16180  T
Q  391 gcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    |||||| ||||||     ||||||||||||||||||||  || ||||||||||||| ||||||| | ||||||||||  |||||||||||    
T  16181 gcttgaaactact-----cattgattactacttcctttgctcgacacatctaagttttattggtgtaattattagttcaaattcacaaca 16265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 38 - 453
Target Start/End: Complemental strand, 99412 - 98998
Alignment:
Q  38 gttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgc 137  Q
    ||||| || ||| |||||||||||| |||||| | |||||||||||| ||  || ||||| |||||||| || ||||||| | ||||||||||||||||     
T  99412 gttggaaaacatctgtaaacaccttaggtagttatatctcattagagaaatgattaaaaagcttcctttggtattttctcataggattcattgtgagtgt 99313  T
Q  138 gggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcg 237  Q
    | || ||||||| ||||| ||||||||| | |||||||| |||||||   || | |||||||||||||| || | |||||||||| |||||| || |||     
T  99312 gagtaacttaaa-aatgggtagaaattaaagtttgttctctgtgagcttctaagctaatttcttgtaacttaatcgtatcattctcatcataatggatca 99214  T
Q  238 gagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttg-tctccttcccttcttgcttatctttgttgc 336  Q
    || || || | ||||  ||  | |||| |||||||||||  |||| | ||||||||| || || ||||| |||||||| | ||||  || ||||||||||    
T  99213 gaaagttactatctt--cttgagagtatgtcattttgcactgaaccgtgtaaacaatatttgtttgttgttctccttctcctctttattgtctttgttgc 99116  T
Q  337 tttgattatgtgtctgatgttgcttcatacttagatctaggtctg-tttgttgttgcttgagactactttattcattgattactacttcctttaatctac 435  Q
    ||||| ||||| |  | |||| ||| | |||| ||| || || || ||||||||||||| ||||||||||  |||||||||||||||||||||| || ||    
T  99115 tttgagtatgtttgcggtgtttctttacacttggatatatgtttgttttgttgttgcttaagactactttgctcattgattactacttcctttactccac 99016  T
Q  436 acatctaagttctattgg 453  Q
    || | |||||| ||||||    
T  99015 acgtttaagttttattgg 98998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 38 - 441
Target Start/End: Original strand, 33721399 - 33721804
Alignment:
Q  38 gttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtg-agtg 136  Q
    |||||||| |||||||||||||||| | ||||||||| ||||||  ||||  || ||||| || |||||||||||||||||| |||||||||  | ||||    
T  33721399 gttgggaaacatttgtaaacacctttg-tagtgagatttcattattggaatgatgaaaaagctccctttagtgttttctcttaggattcatttaggagtg 33721497  T
Q  137 cgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatc 236  Q
     | ||||| |||| |||||    |||||||  |||||||||| ||||    ||   |||||||||||||| | ||||||| ||||||||||||||| |||    
T  33721498 tgtgtgacctaaaaaatgggggaaaattaggttttgttctttatgagtttttaaactaatttcttgtaacctctttgtataattcttatcatagtggatc 33721597  T
Q  237 ggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctc-cttcccttcttgcttatctttgttg 335  Q
     ||||| | ||||||| ||  || ||||| |||||||| |   |||||| |||  ||| |||||||||||| |  ||||| ||||  |||||||||||||    
T  33721598 agagagttgttctcttccc--catagtagatcattttggactaaactggataagtaatattggtgtgttgtttttcttcctttctctcttatctttgttg 33721695  T
Q  336 ctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgt---tgttgcttgagactactttattcattgattactacttcctttaatc 432  Q
    |||||| ||||| | || || || |||| |||||||||||||  |||||||   |||||||||| ||||||||| |||| ||||||||||||||||  ||    
T  33721696 ctttgaatatgtttgtggtgatgtttcacacttagatctagggatgtttgttgttgttgcttgaaactactttactcatcgattactacttcctttgttc 33721795  T
Q  433 tacacatct 441  Q
     ||||||||    
T  33721796 cacacatct 33721804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 27 - 454
Target Start/End: Original strand, 1114931 - 1115361
Alignment:
Q  27 ttttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatc--ttcctttagtgttttctctttggat 124  Q
    |||||||||  |||||||| ||||||| |||| | ||| | ||||||||||||||| ||||| | ||||||    ||||||| ||||||||||||   ||    
T  1114931 ttttttctttggttgggaaacatttgttaacaacatggatggtgagatctcattaggggaaggagaaaaaaaagtttccttttgtgttttctcttaatat 1115030  T
Q  125 tcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattctta 224  Q
    |||||||||||| ||||||||| || ||||||||||||||||  |||||| ||| |||||   || ||| |||||||||||| |||||||||||||||||    
T  1115031 tcattgtgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgagcttttaagttgatttcttgtaacctatttgtatcattctta 1115130  T
Q  225 tcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctcc-ttcccttcttgc 323  Q
    |||||||| || ||||| ||  |||||   |   | ||||  ||||| || | |||| | |||||||||| |||||||||||| ||| ||| | |||  |    
T  1115131 tcatagtggattggagatctgctctct---ccagatagtaaatcattatggaccgaattaggtaaacaatattggtgtgttgtttcctttctcatctgtc 1115227  T
Q  324 ttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt---ttgttgttgcttgagactactttattcattgattacta 420  Q
     ||||||||||| ||| | || |  | || |||| ||||| ||  ||||||| |||| |   ||||||||||||||  |||||||  |||||||||||||    
T  1115228 atatctttgttggtttaaataagactgtggtgttacttcacacagagatctatgtctatttgttgttgttgcttgaagctactttgctcattgattacta 1115327  T
Q  421 cttcctttaatctacacatctaagttctattggt 454  Q
    |||| |||| || | | ||||||||| |||||||    
T  1115328 cttcttttactccatatatctaagttttattggt 1115361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 441
Target Start/End: Complemental strand, 31979757 - 31979363
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||  |||||||| |||||||||||| |||||||||| ||||| |||||||  |||    
T  31979757 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaag-cttccttttgtgttttctcttaggattcattgagagtgtgggtgacacaaa 31979659  T
Q  150 taatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| ||||||||||   |||||| ||||| |||  ||| ||||||||||||||||   |||| | || | | ||| ||||| || |||| ||  | |    
T  31979658 -aatgggtagaaattaggtcttgttcttttgtaagcttataagttaatttcttgtaactcttttgcaacactttcatcttagtggattggagggc--tgc 31979562  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgt 347  Q
    ||| ||| ||| | || ||||| ||| | |||||||||| |||||| ||||||||||   ||||    ||| |||||||||||| ||||||||||||||     
T  31979561 tctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctatttcattgcttatctttattgctttgattatgc 31979462  T
Q  348 gtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgcttg-agactactttattcattgattactacttcctttaatctacacatct 441  Q
     | ||||||||||  | |||||||| |||||||||     ||||||||||||| |||| |||||||  ||||||||| |||||||||  || ||||||||    
T  31979461 ttgtgatgttgctctacacttagatttaggtctgtttttgttgttgttgcttgaagac-actttatctattgattaccacttcctttgctccacacatct 31979363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 32 - 346
Target Start/End: Original strand, 24435806 - 24436117
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||| |    
T  24435806 tcttgagttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattat 24435904  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttg-ttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatag 230  Q
    || || ||||||  |||| ||||| ||||||||||   ||| || ||||| |||  ||| | |||||||||||||   ||||||| |||| | ||| |||    
T  24435905 gaatgtgggtgatataaa-aatgggtagaaattaggtcttgtttttttgtaagcttataagctaatttcttgtaattcatttgtaacattttcatcctag 24436003  T
Q  231 tgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtg-ttgtctccttcccttcttgcttatct 329  Q
    || ||||||| ||  | |||| ||| | | |||||||||| ||| ||||||||||||  || || |||||||| |||| | ||| | | ||| |||||||    
T  24436004 tggatcggagggc--tgctctctcccctagagtaggtcatattggatcgaactgggt-taccatcttggtgtgtttgttttctttcttgctttcttatct 24436100  T
Q  330 ttgttgctttgattatg 346  Q
    ||||||||||| |||||    
T  24436101 ttgttgctttgtttatg 24436117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 441
Target Start/End: Original strand, 10077027 - 10077412
Alignment:
Q  57 caccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatgga 156  Q
    |||||||||||||||||| | |  |  ||||| || ||||| |||||||| ||||||| |||| ||||||||||  |||| |||||||  |||  ||||     
T  10077027 caccttgggtagtgagatttgaccattggaaggatcaaaaagcttccttttgtgttttatcttaggattcattg--agtgtgggtgacacaaa--atggg 10077122  T
Q  157 tagaaattagaatttgttcttt-gtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcc 255  Q
    ||||||||||   ||||||||| || |||  ||| | |||||||||||||| | |||||| || | | ||||||||| || |||| |||  |||||  ||    
T  10077123 tagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaacttttttgtaacactttcatcatagtggattggagggctgctctct--cc 10077220  T
Q  256 tccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgat 354  Q
     ||| | |||||||| ||| | |||| ||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||||  | || |    
T  10077221 cccagattaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatgcttgtggt 10077320  T
Q  355 gttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacatct 441  Q
    ||||||  | |||||||| |||||||||     |||||||||||| ||||| |||||||  ||||||||| |||||||||  || ||||||||    
T  10077321 gttgctctacacttagatttaggtctgtttttgttgttgttgcttggagac-actttatctattgattaccacttcctttgctccacacatct 10077412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 14521919 - 14521784
Alignment:
Q  50 ttgtaaacaccttgggtagtgaga-tctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaa 148  Q
    |||||||||||||||||||||||| | |||  |  ||||| |||||||||||||||||| ||||||||||| ||||| |||| ||||| ||||||| | |    
T  14521919 ttgtaaacaccttgggtagtgagaatttcaccattggaaggataaaaaatcttcctttaatgttttctcttaggatttattgagagtgtgggtgacatga 14521820  T
Q  149 ataatggatagaaattagaatttgttctttgtgagc 184  Q
    | ||||  ||||||||||  | ||||||||||||||    
T  14521819 aaaatgtgtagaaattaggttgtgttctttgtgagc 14521784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 31936820 - 31936695
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||| ||  |||||||||||| |||||||||| ||||| ||||||  | ||    
T  31936820 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttcttt--gtgttttctcttaggattcattgagagtgtgggtgatatgaa 31936723  T
Q  150 taatggatagaaattagaatttgttctt 177  Q
     ||||| |||||||||| ||||||||||    
T  31936722 aaatgggtagaaattaggatttgttctt 31936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 5572078 - 5572188
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| ||| ||  ||||  || ||||  |||||||| |||||||||||| ||||||||||     
T  5572078 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcactattggaatgatcaaaag-cttccttttgtgttttctcttaggattcattga 5572175  T
Q  132 gagtgcgggtgac 144  Q
    ||||| |||||||    
T  5572176 gagtgtgggtgac 5572188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 30517998 - 30518172
Alignment:
Q  67 agtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt-gtgagtgcgggtgacttaaataatggatagaaatta 165  Q
    |||||||| ||||||  ||||| || ||||| ||||||||||||||||||||  | ||||||| ||||||| |||| |||| || ||| | |||||||||    
T  30517998 agtgagatttcattattggaaggatcaaaaa-cttcctttagtgttttctctaag-attcatttgtgagtgtgggtaacttgaaaaataggtagaaatta 30518095  T
Q  166 gaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagag 242  Q
       |||||||||||||| |   || |||| |||| |||||| | ||||||||| ||||||||||||| ||| |||||    
T  30518096 aggtttgttctttgtgaacttttaagttagtttcatgtaacctctttgtatcactcttatcatagtggatcagagag 30518172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 391
Target Start/End: Complemental strand, 22963732 - 22963605
Alignment:
Q  265 ggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttctt-gcttatctttgttgctttgattatgtgtctgatgttgcttca 363  Q
    |||||| ||||| |||||||||| |||||| ||||||||||   ||||| | ||| | |||||||| | ||||||||||||||  | || |||||||  |    
T  22963732 ggtcatattgcaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatagcttatctctattgctttgattatgcttgtggtgttgctcta 22963633  T
Q  364 tacttagatctaggtctgtttgttgttg 391  Q
     |||||||||||||||||||| ||||||    
T  22963632 cacttagatctaggtctgttttttgttg 22963605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 23824661 - 23824788
Alignment:
Q  265 ggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttctt-gcttatctttgttgctttgattatgtgtctgatgttgcttca 363  Q
    |||||| ||||| |||||||||| |||||| ||||||||||   ||||| | ||| | |||||||| | ||||||||||||||  | || |||||||  |    
T  23824661 ggtcatattgcaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatagcttatctctattgctttgattatgcttgtggtgttgctcta 23824760  T
Q  364 tacttagatctaggtctgtttgttgttg 391  Q
     |||||||||||||||||||| ||||||    
T  23824761 cacttagatctaggtctgttttttgttg 23824788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 384
Target Start/End: Original strand, 5017547 - 5017653
Alignment:
Q  278 cgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctag 376  Q
    |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||||| ||||||||||||  | || |||||||  | ||||||||||||    
T  5017547 cgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctag 5017645  T
Q  377 gtctgttt 384  Q
    ||||||||    
T  5017646 gtctgttt 5017653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 21801196 - 21801275
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| || ||||||    
T  21801196 ttgtaaacaccttgggtagtgagatttcaacattggaaggatcaaaaagcttccttttgtgttttctcttagggttcatt 21801275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 441
Target Start/End: Original strand, 31077146 - 31077203
Alignment:
Q  384 tgttgttgcttgagactactttattcattgattactacttcctttaatctacacatct 441  Q
    |||| ||||||||| |||||||| ||||||||||||| |||||||  |||||||||||    
T  31077146 tgttattgcttgaggctactttactcattgattactatttccttttctctacacatct 31077203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 428
Target Start/End: Complemental strand, 18233091 - 18232708
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt---gagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||  |||||||| |||||||||||| ||||||||| |   ||||| |||||||      
T  18233091 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaag-cttccttttgtgttttctcttaggattcattattgagagtgtgggtgacac 18232993  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    |||  |||| ||||||||||   |||||||| ||| |||  ||| | | ||||||||||||   |||||| || | | |||||||||||| |||| | |     
T  18232992 aaa--atgggtagaaattaggtcttgttcttgtgtaagcttataagctgatttcttgtaactcttttgtaacactttcatcatagtgaattggagggttg 18232895  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttctt-gcttatctttgttgctttgatta 344  Q
     |||||  || ||| | |||||||| ||| | |||  || || |||||| ||||||||||   ||||  | ||| | |||||||||| ||||||||||||    
T  18232894 ctctct--cccccagattaggtcatattggaccgatttgagtcaacaatcttggtgtgtttgttcctctctttcatcgcttatctttattgctttgatta 18232797  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttccttt 428  Q
    ||  | || |||||||  | |||||||||||||| |||     |||||||||||| ||||| |||||||  ||||||||| |||||||||    
T  18232796 tgcttgtggtgttgctctacacttagatctaggtttgtttttgttgttgttgcttggagac-actttatctattgattaccacttccttt 18232708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 4629929 - 4629865
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||||||||||| ||||||||||||||  | || |||||||  | |||||||| |||||||||||    
T  4629929 ttgcttatctttattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt 4629865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 454
Target Start/End: Complemental strand, 27165611 - 27165539
Alignment:
Q  383 ttgttgttgcttgagactac-tttattcattgattactacttcctttaatctacacatctaagttctattggt 454  Q
    |||||||||||||||||||| |||  ||||||||||| |||||||||  || ||||||||  ||| |||||||    
T  27165611 ttgttgttgcttgagactacttttgctcattgattacgacttcctttgctccacacatctttgttatattggt 27165539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 30519145 - 30519213
Alignment:
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    ||||||||||||||||| | ||||| | || |||||||||| ||||| |||||  | ||||||||||||    
T  30519145 cttatctttgttgctttaaatatgtttatggtgttgcttcacacttaaatctaaatatgtttgttgttg 30519213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 38 - 304
Target Start/End: Original strand, 102334 - 102598
Alignment:
Q  38 gttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgc 137  Q
    ||||| || |||||| |||||||||||  ||| |||| | ||||||||||| || ||||| | ||||||||||||||||||| | ||| ||| ||||||     
T  102334 gttggaaaacatttgaaaacaccttggtaagtaagattttattagaggaaggatcaaaaagcatcctttagtgttttctcttcgaatttattatgagtgt 102433  T
Q  138 gggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcg 237  Q
    | ||||||| || ||||| ||||||||||  |||||| |||||||||   || | |||||||||||||| | ||||||||| ||||||||| ||| |||     
T  102434 gtgtgacttgaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctctttgtatcactcttatcattgtggatca 102533  T
Q  238 gagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgt 304  Q
    ||||| | |||||  || |||| | ||||| |||||| ||||||||||||||| ||| |||||||||    
T  102534 gagagttgttctc--tcttccacactaggtaattttgaatcgaactgggtaaataatattggtgtgt 102598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 14 - 341
Target Start/End: Original strand, 31513148 - 31513466
Alignment:
Q  14 tctttgatgagagttt-tttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtt 112  Q
    |||| ||||||||||| ||||||| |||| ||| |||||||||||||||||  ||||||||| ||||||||||||| ||||||||   | ||||||||||    
T  31513148 tcttcgatgagagtttatttcttgggttgagaaacatttgtaaacaccttgaatagtgagatttcattagaggaaggataaaaaaaaat-ctttagtgtt 31513246  T
Q  113 ttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatattt 212  Q
    ||||||| |||||||||||||||| || |||||  || ||| | ||||||||||  ||||||||||||    ||||| | |||||| ||||||| | |||    
T  31513247 ttctcttaggattcattgtgagtgtggatgactcgaa-aataggtagaaattag-gtttgttctttgt----gaataagctaattttttgtaacctcttt 31513340  T
Q  213 gtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtca-ttttgcatcgaactgggtaaacaatgttggtgtgttgtctcc 311  Q
      || ||||||||||||||| ||| |||| ||||| ||  ||||  ||| ||||||| ||||| || ||| | |||||||||| |||||||||||| | |    
T  31513341 tcataattcttatcatagtggatcagagaactattatc--tcct--aaaataggtcatttttggatggaattaggtaaacaatattggtgtgttgttttc 31513436  T
Q  312 ttcccttcttgcttatctttgttgctttga 341  Q
    |||| ||||   ||||||||||||||||||    
T  31513437 ttcctttctcttttatctttgttgctttga 31513466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 7493025 - 7493193
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |   |||| || ||||| |||||||||||||||| |||| ||||| |||| ||||| ||||||||| ||    
T  7493025 ttgtaaacaccttgggtagtgagatttcacaattagaaggatcaaaaagcttcctttagtgttttttcttaggatttattgagagtgtgggtgacttgaa 7493124  T
Q  150 taatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatca 218  Q
     ||  | ||||||||||  |||||||| |||||||   |||||||||||||| |||| | |||||||||    
T  7493125 aaacaggtagaaattaggttttgttctgtgtgagcttttatgttaatttcttataacttctttgtatca 7493193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 19752246 - 19752372
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||| |  ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| ||||||  | ||    
T  19752246 ttgtaaacaccttgggtagtgagatttcatcattggaaggatcaaaaagcttccttt-gtgttttctcttaggattcattgagagtgtgggtgatatgaa 19752344  T
Q  150 taatggatagaaattagaatttgttctt 177  Q
     ||||| |||||||||| | ||||||||    
T  19752345 aaatgggtagaaattaggacttgttctt 19752372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 3051382 - 3051197
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||| ||||||||||||||| |||  |  ||||  || ||||| |||||||| ||| |||||||| ||||||||||     
T  3051382 tcttgagttgggaaacatt-gtaaacatcttgggtagtgagatttcaccattggaaagatcaaaaagcttccttttgtgctttctcttaggattcattga 3051284  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatca 218  Q
    |||||   ||||| | || ||||| |||||||||   ||||||||||||||||   |||| ||||||||||||||  ||||||||||    
T  3051283 gagtgtaagtgacatgaaaaatgggtagaaattaagttttgttctttgtgagctcttatgctaatttcttgtaactcatttgtatca 3051197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 109 - 305
Target Start/End: Original strand, 9054748 - 9054942
Alignment:
Q  109 tgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacat 208  Q
    ||||||||||| |||||||||| ||||| | ||||||| || ||||| ||||||||||| ||||||||||||| ||   || | ||||||||||||||      
T  9054748 tgttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttcttgtaacca 9054847  T
Q  209 atttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgtt 305  Q
     ||||||||| | | ||| ||||| ||  ||||||  | |||| ||||||| |||||||||| ||| |  |||| | ||||| ||| ||||||||||    
T  9054848 ctttgtatcactttcatcttagtggattagagagc--tgctctctcctccagagtaggtcatattggactgaacagagtaaataatattggtgtgtt 9054942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 441
Target Start/End: Original strand, 5702332 - 5702730
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtttt-ctctttggattcattgt---gagtgcgggtgact 145  Q
    ||||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| ||||||| ||||| ||||||||| |   ||||| ||||||||    
T  5702332 ttgtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaagcttccttttgtgtttttctcttaggattcattattgagagtgtgggtgact 5702431  T
Q  146 taaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagct 244  Q
     |||  |||| ||||||||||  |||| |||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||| | || |||| |      
T  5702432 caaa--atgggtagaaattaggttttgctcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcataggggattggaggg-- 5702527  T
Q  245 attctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttctt-gcttatctttgttgctttgatt 343  Q
    || |||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| ||||| | |||||||| | ||||||| |||    
T  5702528 atgctctctcccccatattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttccttcatagcttatctctattgctttaatt 5702627  T
Q  344 atgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgct-tgagactactttattcattgattactacttcctttaatctacac 437  Q
    |||  | || || ||||  | ||||||||||||||||||     |||||||||||  ||||| |||||||||||||||||| ||||| |||  || ||||    
T  5702628 atgcttgtggtgatgctctacacttagatctaggtctgtttttgttgttgttgctaggagac-actttattcattgattaccacttcatttgctccacac 5702726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 33503697 - 33503740
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaa 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33503697 aaacaccttgggtagtgagatctcattagaggaagaataaaaaa 33503740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 384
Target Start/End: Original strand, 4696443 - 4696781
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| |||||||||||| ||||||| ||     
T  4696443 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaagatcaaaaagcttccttttgtgttttctcttaggattcaatga 4696541  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatag 230  Q
    ||||| |||||||  | | ||||| ||||||||||   ||||||||  || |||  ||| | ||||||||||||||         || |||  |||||||    
T  4696542 gagtgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgcgtaagcttataagctaatttcttgtaac---------tctttc--atcatag 4696628  T
Q  231 tgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatct 329  Q
    || || |||| ||  | |||| ||| ||| | |||||||| ||| |||||||||||| |||||| ||||||||||   || || | ||| ||||||||||    
T  4696629 tggattggagggc--tgctctctcccccagattaggtcatattggatcgaactgggtcaacaatcttggtgtgtttgttcatttctttcattgcttatct 4696726  T
Q  330 ttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    || ||||||||||||||| | || |||||||  | |||||||| || ||||||||    
T  4696727 ttattgctttgattatgtttgtggtgttgctctacacttagatttatgtctgttt 4696781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 307
Target Start/End: Original strand, 8863521 - 8863732
Alignment:
Q  94 aaaatcttcctttagtgttttctctttggattca-ttgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgt 192  Q
    |||||||||||||| |||||||||||| |||||| || || ||| | ||||||| || ||||| |||||||||   |||||||  |||||||   || ||    
T  8863521 aaaatcttcctttaatgttttctctttagattcatttatgtgtgtgagtgacttgaaaaatgggtagaaattaaggtttgttc--tgtgagcttttaagt 8863618  T
Q  193 taatttcttgtaacatatttgtatcattc-ttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaac 291  Q
    |||||||||||||| | ||||||||| || || |||||||| |||  |||| ||  || |||||  || ||||||| |||||| | ||||||||| ||||    
T  8863619 taatttcttgtaacctctttgtatcactctttctcatagtggatcaaagagtta--ctatttccatcagagtaggttattttgaaccgaactgggaaaac 8863716  T
Q  292 aatgttggtgtgttgt 307  Q
    ||| ||| ||||||||    
T  8863717 aatattgatgtgttgt 8863732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 50 - 347
Target Start/End: Original strand, 23799428 - 23799725
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat--tgtgagtgcgggtgactta 147  Q
    |||||||||||||| |||| ||||| |||  |  ||||| || ||||| |||||||| |||||||| ||| ||||||||  |||||  | |||||||  |    
T  23799428 ttgtaaacaccttgagtagggagatttcaccattggaaggatcaaaaagcttccttttgtgttttcccttaggattcatattgtgacagtgggtgacaca 23799527  T
Q  148 aataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctat 246  Q
    ||  |||| ||||||||||   |||||||| ||| |||   || | ||||||||||||||   |||||| || | | ||||||||| || |||| |||      
T  23799528 aa--atgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgc 23799625  T
Q  247 tctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
    |||||  |||||||| |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||| | |||||||||||||    
T  23799626 tctct--cctccaaattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctctattgctttgattat 23799723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 5990456 - 5990581
Alignment:
Q  93 aaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgt 192  Q
    ||||| ||| ||||||||||||||||| ||||||||||  |||| ||||||||| || ||||| |  |||| ||    ||||||||||||||   || |     
T  5990456 aaaaagctttctttagtgttttctcttaggattcattgaaagtgtgggtgacttgaaaaatgggtgaaaatgaggtcgtgttctttgtgagcttttaagc 5990555  T
Q  193 taatttcttgtaacatatttgtatca 218  Q
    |||||||||||||||| |||||||||    
T  5990556 taatttcttgtaacatctttgtatca 5990581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 28307807 - 28307711
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgactt 146  Q
    |||| |||||||||||||||||||| |||  |  ||||| |||||||| ||| |||| ||||||||| || ||||||| || ||||| |||||||||    
T  28307807 ttgttaacaccttgggtagtgagatttcacaattggaaggataaaaaagctttcttttgtgttttcttttaggattcagtgagagtgtgggtgactt 28307711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 390
Target Start/End: Complemental strand, 11771921 - 11771855
Alignment:
Q  324 ttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgtt 390  Q
    |||||||||||| |||  |||||  | || ||||||||||||||||||||||||| |||||||||||    
T  11771921 ttatctttgttgtttttgttatgcttttggtgttgcttcatacttagatctaggtatgtttgttgtt 11771855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 26403081 - 26403159
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| ||||||||||||  |||||||    
T  26403081 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttatgattcat 26403159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 428
Target Start/End: Original strand, 5990748 - 5990793
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttccttt 428  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||    
T  5990748 ttgttgttgcttgatgctactttatccattgattactacttccttt 5990793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 9055025 - 9055082
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatc 440  Q
    ||||||||  ||||||||||||||| ||||||||| ||||||||||| || |||||||    
T  9055025 ttgttgttttttgagactactttatccattgattagtacttcctttactccacacatc 9055082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 7493264 - 7493328
Alignment:
Q  390 tgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggt 454  Q
    |||||||||||||||||  ||||||||||||||||||||  || |||||||  |||| |||||||    
T  7493264 tgcttgagactactttacacattgattactacttcctttgctccacacatcatagttttattggt 7493328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 14601405 - 14601233
Alignment:
Q  53 taaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataa 152  Q
    ||||||| |||| || |||||||| ||||||| || |||  |||| ||| ||||| ||||||||| | |||||||| ||| ||  | ||||||| || ||    
T  14601405 taaacacattggctaatgagatcttattagagaaataatctaaaagctttctttattgttttctcataggattcatcgtgcgtttgagtgacttgaaaaa 14601306  T
Q  153 tggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttat 225  Q
    | | || ||||||| ||  |||||||||| ||  ||| | ||||||| |||||| | ||||||||||| ||||    
T  14601305 taggtaaaaattaggatacgttctttgtgggcttatacgctaatttcgtgtaacctctttgtatcattattat 14601233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 8863833 - 8863920
Alignment:
Q  390 tgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcaca 477  Q
    ||||||| ||||||||||||||| ||||  |||||||||  |  |||||| |||||| ||||||| | |||||| ||| |||||||||    
T  8863833 tgcttgaaactactttattcattaattagcacttcctttgtttcacacatttaagttttattggtgtgattatttgttcgaattcaca 8863920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 32916355 - 32916304
Alignment:
Q  354 tgttgcttcatacttagatctaggtctgtttgttgttgcttgagactacttt 405  Q
    ||||| |||||||||| ||||| || | ||||||||||||||||||||||||    
T  32916355 tgttggttcatacttatatctaagtttatttgttgttgcttgagactacttt 32916304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 224 - 384
Target Start/End: Original strand, 26403256 - 26403415
Alignment:
Q  224 atcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttg 322  Q
    ||||||||| || ||||||||  |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||    ||| |||    
T  26403256 atcatagtggattggagagctgctctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctcgttttcattg 26403353  T
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||||||||| ||||||||||||||  | || |||||||  | |||||||| |||||||||||    
T  26403354 cttatctttattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt 26403415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 28387955 - 28387895
Alignment:
Q  324 ttatctttgttgctttgattatg--tgtctgatgttgcttcatacttagatctaggtctgtt 383  Q
    |||||||||||||||| ||||||  ||| |||| |||||||| |||||||||||||||||||    
T  28387955 ttatctttgttgctttcattatgcttgt-tgattttgcttcacacttagatctaggtctgtt 28387895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 34477335 - 34477417
Alignment:
Q  316 cttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttgcttgaga 398  Q
    |||||| ||||||||| ||||||||| ||||| | |  ||||| ||||  |||| |||||| ||| |||||||||||||||||    
T  34477335 cttctttcttatctttattgctttgactatgtttgtagtgttgtttcacccttaaatctagatctctttgttgttgcttgaga 34477417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 383 - 431
Target Start/End: Complemental strand, 28307469 - 28307421
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttcctttaat 431  Q
    |||| ||| |||||| |||||| | ||||||||||||||||||||||||    
T  28307469 ttgtcgttacttgaggctacttgactcattgattactacttcctttaat 28307421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 218
Target Start/End: Original strand, 34477128 - 34477239
Alignment:
Q  104 tttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgt 203  Q
    |||| ||||||||||||||||||||||||  |  | ||||||| || ||||| | ||||||||   ||||||||||||||    || ||||||||||| |    
T  34477128 tttattgttttctctttggattcattgtggatttgagtgacttgaaaaatgggtcgaaattag---ttgttctttgtgagtttgtaagttaatttctttt 34477224  T
Q  204 aacatatttgtatca 218  Q
    ||| | |||||||||    
T  34477225 aacctctttgtatca 34477239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 39 - 424
Target Start/End: Complemental strand, 5611398 - 5611009
Alignment:
Q  39 ttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattg-tgagtgc 137  Q
    ||||||| |||| ||||||||||| | || |||||| ||||||  | ||  || ||||| ||| ||||||||||||||||| ||| |||||  ||||||     
T  5611398 ttgggaaacattggtaaacaccttagttaatgagatttcattattgaaaagatcaaaaagcttgctttagtgttttctcttaggaatcatttatgagtgt 5611299  T
Q  138 gggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcg 237  Q
       ||||||||| ||||||||||||| ||| |||||||||||||| |   || | |||||| || |||  | ||||||||| | ||||||||||| |||     
T  5611298 ttatgacttaaa-aatggatagaaataagattttgttctttgtgaacttttaagctaattttttttaatctctttgtatcagttttatcatagtggatca 5611200  T
Q  238 gagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttcttgcttatctttgttgct 337  Q
    || || |  ||   |||||||| |||| || ||||||   |||| | | |||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  5611199 gaaagttggtca--ttcctccatagtatgttattttgggccgaatttgataaacaatattggtgtgttgttttcttcccttctttcttatctttgttgct 5611102  T
Q  338 ttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttg------ttgttgcttgagactactttattcattgattactacttc 424  Q
    |||| |||   | || ||||| ||||  ||||||||||||| ||||||      ||||||||| ||||||||||| |||||||||||||||||    
T  5611101 ttgaatattcttatggtgttgtttcactcttagatctaggtttgtttgttatttttgttgcttaagactactttactcattgattactacttc 5611009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 47 - 244
Target Start/End: Complemental strand, 30900114 - 30899918
Alignment:
Q  47 catttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgactt 146  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||||||||||| | |||||| ||||| ||  | ||| |||    
T  30900114 catttataaacaccttgggtagtgagatttcattagaggaaggataaaaaagctttctttagtgttttctc-taggattctttgtgggtttgagtggctt 30900016  T
Q  147 aaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagct 244  Q
     || |||   |||||| |||| ||||||||||||||||   || | |||||||||||||| | ||||||||| |||| ||||| |  |||||||||||    
T  30900015 gaaaaatcagtagaaaatagagtttgttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcactcttctcataatagatcggagagct 30899918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 28832519 - 28832374
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||||     
T  28832519 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattga 28832421  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttcttt 178  Q
    ||||| ||||||  | || ||||| |||||||||||| |||||||||    
T  28832420 gagtgtgggtgatatgaaaaatgggtagaaattagaacttgttcttt 28832374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 2630433 - 2630345
Alignment:
Q  93 aaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtg 181  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| || |||| ||| |||||||  |||||||||||||    
T  2630433 aaaaagcttcctttagtgttttctcttaggattcattgtgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtg 2630345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 11181667 - 11181852
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| |||||||||||||||||||| || |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||||    
T  11181667 tcttgggttgggaaacatt-gtaaacaccttgggtagtgaaatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattgt 11181765  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatca 218  Q
    ||||| ||||||| | || ||||| ||||||||||   |||||| |||| ||||   || | ||||||||||||||  ||||||||||    
T  11181766 gagtgtgggtgacatgaa-aatgggtagaaattaggtcttgttcatttgagagcttttaggctaatttcttgtaactcatttgtatca 11181852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 441
Target Start/End: Original strand, 42127266 - 42127656
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataat 153  Q
    ||||||||||||||||||||| |||  |  ||||| || ||||| ||| |||| |||||||||||| |||||||||| ||||| ||||||  | || |||    
T  42127266 aaacaccttgggtagtgagatttcaccattggaaggatcaaaaagctttcttttgtgttttctcttaggattcattgagagtgtgggtgatatgaaaaat 42127365  T
Q  154 ggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctt 252  Q
    || |||||| ||| | |||||| ||||| |||  ||| | |||||||||||||| |  ||||| || | | ||| ||||| || || | ||  | ||||     
T  42127366 gggtagaaagtaggacttgttcttttgtaagcttataagctaatttcttgtaac-tcattgtaacactttcatcttagtggattggggggc--tgctctc 42127462  T
Q  253 tcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtct 351  Q
    ||| ||| | |||||||| ||  |||||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||| ||||||||||  | |    
T  42127463 tcccccagattaggtcatattagatcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgttttgattatgcttgt 42127562  T
Q  352 gatgttgcttcatacttagatctaggtctgt----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacatct 441  Q
    | |||||||  | | |||||| || ||||||    |||||||||||| ||||| ||||||| |||||||||| |||| ||||  || ||||||||    
T  42127563 ggtgttgctctacaattagatttaagtctgttttgttgttgttgcttggagac-actttatccattgattaccactttctttgctccacacatct 42127656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 446
Target Start/End: Complemental strand, 34842843 - 34842449
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataat 153  Q
    ||||||||||||||||||||||||||||| |||||  || ||| | || ||||||||| ||||||| | |||||||||| ||    ||||||| || |||    
T  34842843 aaacaccttgggtagtgagatctcattaggggaaggttacaaagt-tttctttagtgtgttctcttagaattcattgtgggttttagtgacttgaaaaat 34842745  T
Q  154 ggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctcttt 253  Q
    |  |||||||||| || ||||||| ||||||   || | |||  ||||||||| | ||||||||| || |  ||||||| ||  |||||||  |||| |     
T  34842744 gagtagaaattaggatatgttcttggtgagcttgtaagataacatcttgtaacctctttgtatcactcattacatagtggattagagagctgctctc-tc 34842646  T
Q  254 cctccaaagtaggtcattttgcatcgaactgggtaaac-aatgttggtgtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctg 352  Q
    |||| || |||||  |  ||    | |||||||||||| ||| | ||||  |||| ||  |||| |||| |||||||||||||||| |  ||||  | ||    
T  34842645 cctcaaatgtaggataaatttatccaaactgggtaaacaaatttcggtggattgtttc--tcccatctttcttatctttgttgcttcggatatgcttgtg 34842548  T
Q  353 atgttgcttcatacttagatctaggtctgt------ttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatctaagtt 446  Q
     |||||||||| |||||||||||||| |||      |||||| |||||||| |||||||| || ||||||||||||||||||| || |||||||||||||    
T  34842547 gtgttgcttcacacttagatctaggtttgtttattgttgttgctgcttgaggctactttactc-ttgattactacttcctttactccacacatctaagtt 34842449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 428
Target Start/End: Original strand, 17003811 - 17004193
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||  ||  || | |||| | |||    
T  17003811 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatattg--tgagagtgagtgaaa 17003908  T
Q  150 t--aatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctat 246  Q
    |  ||||| ||||||||||   |||||||| ||| |||   || |||||||| |||||||   |||| |  | | | ||||||||| || | ||||||      
T  17003909 ttaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagttaattttttgtaactcttttgaaatactttcatcatagtggattgaagagctgc 17004008  T
Q  247 tctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
    |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| |||||||||||||    
T  17004009 tctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatcttttttgctttgattat 17004106  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttccttt 428  Q
    |  | || |||||||| | |||||||| |||||||||     |||||||||||| ||||| |||||||  ||||||||| |||||||||    
T  17004107 gcttgtggtgttgctt-acacttagatttaggtctgtttttgttgttgttgcttggagac-actttatctattgattaccacttccttt 17004193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 31300447 - 31300574
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||  |||||||| |||||||||||| |||||||||| ||||| ||||||  | |     
T  31300447 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaggcttccttttgtgttttctcttaggattcattgagagtgtgggtgatatgag 31300546  T
Q  150 taatggatagaaattagaatttgttctt 177  Q
     ||||| |||||||||| | ||||||||    
T  31300547 aaatgggtagaaattaggacttgttctt 31300574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 428
Target Start/End: Complemental strand, 3880307 - 3880166
Alignment:
Q  289 aacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctg--tttg 385  Q
    |||||| |||||||||||| ||||| | ||| |||||||||||| ||||||||||||||  | || |||||||| | |||||||| ||||||||  ||||    
T  3880307 aacaatcttggtgtgttgt-tcctttctttcattgcttatctttattgctttgattatgcttgtggtgttgctttacacttagatttaggtctgtttttg 3880209  T
Q  386 ttgttgcttg-agactactttattcattgattactacttccttt 428  Q
    |||||| ||| |||| |||||||  ||||||||| |||||||||    
T  3880208 ttgttgattgaagac-actttatctattgattaccacttccttt 3880166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 19589007 - 19588896
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||| |||||| |||||||| |||  |  ||||| || |||||||||||||| |||||||||||| ||||||||||     
T  19589007 tcttgggttgggaaacatt-gtaaacatcttgggcagtgagatttcaccattggaaggatcaaaaatcttccttttgtgttttctcttaggattcattga 19588909  T
Q  132 gagtgcgggtgac 144  Q
    || || |||||||    
T  19588908 gattgtgggtgac 19588896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 166
Target Start/End: Original strand, 24553362 - 24553495
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |   |||| || ||||| |||||||| |||||||||||| | |||||||      
T  24553362 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattagaaggatcaaaaagcttccttttgtgttttctcttagaattcattaa 24553460  T
Q  132 gagtgcgggtgacttaaataatggatagaaattag 166  Q
    ||||| |||| |  |||| ||||| ||||||||||    
T  24553461 gagtgtgggtcatataaaaaatgggtagaaattag 24553495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 2630132 - 2630087
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttccttt 428  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  2630132 ttgttgttgcttgaggctactttattcattgcttactacttccttt 2630087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 10281997 - 10281901
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--attgtgagtgcgggtgac 144  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| ||| |||| |||||||||||| ||||||  |||||||||| |||||||    
T  10281997 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagctttcttttgtgttttctcttaggattcatattgtgagtgtgggtgac 10281901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 108 - 183
Target Start/End: Complemental strand, 6742039 - 6741964
Alignment:
Q  108 gtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgag 183  Q
    ||||||| |||| |||||||||| ||||| ||||||||| || ||||  ||||||||||  |||||||||||||||    
T  6742039 gtgttttttcttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgag 6741964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 28537527 - 28537489
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactac 421  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  28537527 ttgttgttgcttgagactactttactcattgattactac 28537489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 30899765 - 30899668
Alignment:
Q  383 ttgttgttgcttgagactactttattcattgattactacttcctttaatctacacatctaagttctattggtat-tattattagtttgaattcacaaca 480  Q
    ||||||||||||||| |||||||  ||||||||||||| ||| ||   || ||||||||||||| ||||| ||| | ||||| ||||||||||||||||    
T  30899765 ttgttgttgcttgaggctactttgctcattgattactatttctttagctccacacatctaagttttattgatatgttttatt-gtttgaattcacaaca 30899668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 33030854 - 33030948
Alignment:
Q  112 tttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaac 206  Q
    |||||||| |||||||||| ||||| | ||||||| || ||||| |||||||||   ||||||||||||||||   || | ||||||||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgtgagcttttaagctaatttcttgtaac 33030948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 11916807 - 11916901
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| || |||||    
T  11916807 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaa-cttccttttgtgttttctcttagggttcat 11916901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 384
Target Start/End: Original strand, 24553569 - 24553691
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||| | |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||||  | || |||| ||     
T  24553569 taggtcatattggaccgaactggatcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatgcttgtggtgtttctc 24553668  T
Q  362 catacttagatctaggtctgttt 384  Q
     | |||||||| |||||||||||    
T  24553669 tacacttagatttaggtctgttt 24553691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 12084298 - 12084361
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||||||||||||| ||||||||||||  | || |||||||  | ||||||||||||||||||||    
T  12084298 ttgcttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctaggtctgttt 12084361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 39 - 424
Target Start/End: Complemental strand, 21156685 - 21156296
Alignment:
Q  39 ttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattg-tgagtgc 137  Q
    ||||||| |||| ||||||||||| | || |||||| ||||||  | ||  || ||||| ||| ||||||||||||||||| ||| |||||  ||||||     
T  21156685 ttgggaaacattggtaaacaccttagttaatgagatttcattattgaaaagatcaaaaagcttgctttagtgttttctcttaggaatcatttatgagtgt 21156586  T
Q  138 gggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcg 237  Q
       ||||||||| ||||||||||||| ||| |||||||||||||| |   || | |||||| || |||  | ||||||||| | ||||||||||| |||     
T  21156585 ttatgacttaaa-aatggatagaaataagattttgttctttgtgaacttttaagctaattttttttaatctctttgtatcagttttatcatagtggatca 21156487  T
Q  238 gagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttcttgcttatctttgttgct 337  Q
    || || |  ||   |||||||| |||| || ||||||   |||| | | |||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  21156486 gaaagttggtca--ttcctccatagtatgttattttgggccgaatttgataaacaatattggtgtgttgttttcttcccttctttcttatctttgttgct 21156389  T
Q  338 ttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttg------ttgttgcttgagactactttattcattgattactacttc 424  Q
    |||| |||   | || ||||| ||||  ||||||||||||| ||||||      ||||||||| ||||||||||| |||||||||||||||||    
T  21156388 ttgaatattcttatggtgttgtttcactcttagatctaggtttgtttgttatttttgttgcttaagactactttactcattgattactacttc 21156296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 18552726 - 18553058
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| |||||||  | |    
T  18552726 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaaacttccttttgtgttttctcttaggattcattgagagtgtgggtgac--aca 18552823  T
Q  150 taatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||||| || |||| ||  | |    
T  18552824 aaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggc--tgc 18552921  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgt 347  Q
    ||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||| ||   ||||| | ||| ||| |||||||| |||||||||||||||    
T  18552922 tctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtatttgttcctttctttcattgattatctttattgctttgattatgt 18553021  T
Q  348 gtctgatgttgcttcatacttagatctaggtctgttt 384  Q
     | || |||||||  | |||||||| ||| |||||||    
T  18553022 ttgtggtgttgctctacacttagatttagttctgttt 18553058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 32 - 441
Target Start/End: Original strand, 40592606 - 40593020
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--att 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||  |||    
T  40592606 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatatt 40592704  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    ||||| | |||||||  | | ||||| ||||||||||| ||||||||| ||| |||   || | ||||||||||||||   |||||| || | | |||||    
T  40592705 gtgagagtgggtgac--acaaaatgggtagaaattagattttgttcttgtgtaagcttgtaagctaatttcttgtaactcttttgtaacactttcatcat 40592802  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttccctt--cttgctta 326  Q
    |||  || |||||||  |||||| |||  || | |||||||| ||| | |||||||||| |||||| ||||||||||   |||||  |||   |||||||    
T  40592803 agtcgattggagagc--ttctctctcccacagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttccttttctttcattgctta 40592900  T
Q  327 tctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattacta 420  Q
    ||| | ||||||||||||||  | || |||||||  | |||||||| |||||||||     |||||||||||| ||||| | ||||| |||||||||| |    
T  40592901 tctatattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgtttttgttgttgttgcttggagac-attttatccattgattacca 40592999  T
Q  421 cttcctttaatctacacatct 441  Q
    ||||||||  || ||||||||    
T  40593000 cttcctttgctccacacatct 40593020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 44658345 - 44658536
Alignment:
Q  61 ttgggtagtgagatctcattagaggaagaat-aaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatag 159  Q
    |||||| ||||||||||||||||| ||| || |||||||||| ||||| | ||||||||| ||||| |||||| ||  | ||||||| ||  |  |||||    
T  44658345 ttgggtggtgagatctcattagagaaaggataaaaaaatctttctttattattttctcttgggattaattgtgggtttgagtgacttgaaatacagatag 44658444  T
Q  160 aaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctct 251  Q
    |||||||||| | |||||||||||  | |  | |||||| ||||||||| ||||||||| ||||||| ||||| ||| ||||  ||||||||    
T  44658445 aaattagaatatcttctttgtgagttagtgagctaatttattgtaacatttttgtatcactcttatcctagtggatctgagaattattctct 44658536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 85 - 428
Target Start/End: Complemental strand, 29100371 - 29100033
Alignment:
Q  85 gaagaataaaaaatcttcctttagtgttttctctttggattcattg-tgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgag 183  Q
    |||| ||||||||  |||||||||| || ||||||  ||||||||  ||||||  |||||||| || || |  ||||||||||  |||||||||||||||    
T  29100371 gaaggataaaaaagtttcctttagtattatctcttatgattcatttatgagtgtaggtgacttgaaaaacgagtagaaattagggtttgttctttgtgag 29100272  T
Q  184 cgaatatgttaatttcttgtaacatatttgtatcattctt-atcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaac 282  Q
        || | ||||||||| |||| | ||||||||| |||| ||||||||| |  ||||||||  |||||| |||  | ||| ||| |||||| | |||||    
T  29100271 tttttaagctaatttcttataacctctttgtatcactctttatcatagtggaatggagagctgctctcttccct--atagtgggtaattttggaccgaac 29100174  T
Q  283 tgggtaaacaatgttggtgtgttgtctccttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt 382  Q
    |||||||||||| ||||||||||||         ||||| ||  ||||| ||||||||| ||||| | || |||| ||||| | |||||||||  || ||    
T  29100173 tgggtaaacaatattggtgtgttgt--------tttctttctcttctttcttgctttgaatatgtttgtggtgtttcttcacagttagatctatctcagt 29100082  T
Q  383 ---ttgttgttgcttgagactactttattcattgattactacttccttt 428  Q
       ||||||||||||||||||| | || |||||||||||||||||||||    
T  29100081 ttgttgttgttgcttgagactattctactcattgattactacttccttt 29100033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 3328198 - 3328355
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||| ||||| ||||| ||||||  | ||    
T  3328198 ttgtaaacaccttgggtagtgagatttcagcattggaaggatcaaaaaacttccttttgtgttttctcttaggatacattgagagtgtgggtgatatgaa 3328297  T
Q  150 taatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaac 206  Q
     ||||| |||||||||| | |||||| ||||| |||  ||| | ||||||||||||||    
T  3328298 aaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 3328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 8126895 - 8126761
Alignment:
Q  29 ttttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||| |||| |  ||||| || ||||| |||| ||| ||||||||||||  |||||||    
T  8126895 ttttcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcatcattggaaggatcaaaaagcttctttttgtgttttctcttaagattcat 8126797  T
Q  129 tgtgagtgcgggtgacttaaataatggatagaaatta 165  Q
    || ||||| |||||||  ||| ||||| |||||||||    
T  8126796 tgagagtgtgggtgacacaaa-aatgggtagaaatta 8126761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 480
Target Start/End: Complemental strand, 25517153 - 25516791
Alignment:
Q  124 ttcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattctt 223  Q
    |||| |||||||| ||||||||| || |||   ||||||||||  ||||||||||||||||   || | ||||||||| |||| ||  | ||||||||||    
T  25517153 ttcactgtgagtgtgggtgacttgaaaaataagtagaaattagggtttgttctttgtgagcttttaagctaatttcttataacctaaatttatcattctt 25517054  T
Q  224 atcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgc-atcgaactgggtaaacaatgttggtgtgttg-tctccttcccttctt 321  Q
    |||| | | |||  ||||| | |||||| ||   |||||| | |||||||   ||||||||||||||||| | ||||||||||| | ||| || ||||||    
T  25517053 atcacaataaattagagagttgttctctctct--caaagttgatcatttttagatcgaactgggtaaacactattggtgtgttgttttccctctcttctt 25516956  T
Q  322 gcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt------ttgttgttgcttgagactactttattcattgat 415  Q
     |||||| ||||| |||| | ||||| | || ||||| |||| |||| |||||| |||| |      ||||||||  |||||||||||||| | ||||||    
T  25516955 tcttatccttgttactttaaatatgtttgtggtgttgtttcacacttcgatctaagtctattttttgttgttgttatttgagactactttacttattgat 25516856  T
Q  416 tactacttcctttaatctacacatctaagttctattggtattattattagtttgaattcacaaca 480  Q
    |||||||| ||||| || |||||   ||| | ||||||||| ||||  ||||  |||||||||||    
T  25516855 tactactttctttactcaacacaataaagatttattggtatgattaccagttcaaattcacaaca 25516791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 346
Target Start/End: Original strand, 1736145 - 1736442
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc---attgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||| ||| |||||||||||| ||||||   |||| |||||  ||||||      
T  1736145 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttctttttgtgttttctcttaggattcattattgagagtgttggtgac-- 1736242  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    | | ||||| ||||||||||   |||||||| ||| |||  ||| ||||||||||||||||   |||||| || | | ||||||||| || |||| ||      
T  1736243 acaaaatgggtagaaattaggtcttgttcttgtgtaagcttataagttaatttcttgtaactcttttgtaacactttcatcatagtggattggagggc-- 1736340  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
    | |||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||| ||| ||||||||||||    
T  1736341 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatattggtgtgtttgttcctttctttcattgcttatgtttattgctttgatta 1736440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 3323515 - 3323689
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| |||||||||||| | ||||||||     
T  3323515 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaagcttccttttgtgttttctcttagaattcattga 3323613  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaac 206  Q
    ||||| ||||||  | || ||||| |||||||||  | |||||| ||||| |||  ||| | ||||||||||||||    
T  3323614 gagtgtgggtgatatgaacaatgggtagaaattatgacttgttcttttgtaagcttataagctaatttcttgtaac 3323689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 48438461 - 48438126
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc---attgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| |||||||||||| ||||||   |||| ||||| |||||||      
T  48438461 ttgtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaagcttccttttgtgttttctcttaggattcattattgagagtgtgggtgac-- 48438364  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    | | ||||| ||||||||||   |||||||| ||| |||  ||||| ||||||||||||||   |||||| || | | ||||||||| || |||| ||      
T  48438363 acaaaatgggtagaaattaggtcttgttcttgtgtaagcttatatgctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggc-- 48438266  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
    | |||| ||| ||| | |||||||| ||| | |||||| ||| || ||| ||||||||||   ||||| |  || ||| |||||||| ||| ||||||||    
T  48438265 tgctctctcccccagattaggtcatattggaccgaactaggtcaataatcttggtgtgtttgttcctttctgtcattgtttatctttattgttttgatta 48438166  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||  | || |||||||  | ||||||||||||||||||||    
T  48438165 tgcttgtggtgttgctctacacttagatctaggtctgttt 48438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 5366114 - 5366348
Alignment:
Q  1 ttagggttgggcatctttgatgagagttt-tttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctc-attagaggaagaataaaaaat 98  Q
    ||||||||| |  |||||| ||||||||| ||||||| ||||| || ||||||||||||||||||||||| |||| || || |  ||||| ||  ||||     
T  5366114 ttagggttgagagtctttggtgagagtttatttcttgagttggaaaacatttgtaaacaccttgggtagtaagatttcaataattggaaggatcgaaaag 5366213  T
Q  99 cttcctttagtgttttctctttggattca-ttgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatt 197  Q
     |||||||||||||||| ||| ||||||| || | |||| ||||||||  || || || |||||||||  |||| ||| |||||||    || | |||||    
T  5366214 tttcctttagtgttttcgcttaggattcatttattagtgtgggtgactagaaaaaagggtagaaattaagattttttcattgtgagattttaagataatt 5366313  T
Q  198 tcttgtaacatatttgtatcattcttatcatagtg 232  Q
    ||||||||| | ||||||||| | | |||||||||    
T  5366314 tcttgtaacctctttgtatcactttcatcatagtg 5366348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 25796024 - 25795931
Alignment:
Q  51 tgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgac 144  Q
    |||||||||||||||||||||||| |||  |  ||||| || ||||| ||||||||  ||||||||||| |||||||||| ||||| |||||||    
T  25796024 tgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttatgttttctcttaggattcattgagagtgtgggtgac 25795931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 441
Target Start/End: Original strand, 8370313 - 8370724
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat--t 129  Q
    ||||| |||||||| |||| ||||||| ||||||||||||||| |||  |  ||||| || |||| | ||||||| |||||||||||| ||||||||  |    
T  8370313 tcttgggttgggaaacatt-gtaaacatcttgggtagtgagatttcaccattggaaggatcaaaagt-ttccttttgtgttttctcttaggattcatatt 8370410  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    ||||| | |||||||  ||||   || |||||||||    |||||||| ||| |||   || | |||||||||||||| | |||||| || | | |||||    
T  8370411 gtgagagtgggtgacacaaat---gggtagaaattatgtcttgttcttgtgtaagcttttaagctaatttcttgtaac-tctttgtaacactttcatcat 8370506  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgtt--ggtgtgttgtctccttcccttc-ttgctt 325  Q
    |||| || ||||||||  |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||  ||||||||   ||||| | ||| ||||||    
T  8370507 agtggattggagagctgctctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcattgctt 8370604  T
Q  326 atctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattact 419  Q
    |||||||| ||||||||||||  | || |||||||  | ||||||||||||||||||     |||||||||||| ||||| ||||||  ||||||||||     
T  8370605 atctttgt-gctttgattatgcttgtggtgttgctctacacttagatctaggtctgtttttgttgttgttgcttggagac-actttacacattgattacc 8370702  T
Q  420 acttcctttaatctacacatct 441  Q
     ||||||||| || ||||||||    
T  8370703 tcttcctttactccacacatct 8370724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 21353757 - 21353639
Alignment:
Q  100 ttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttc 199  Q
    ||||||||||||||||||||  |||||||||| |||| | ||| | | || ||||| ||||||||||  | ||||||||||||||   | || |||||||    
T  21353757 ttcctttagtgttttctcttaagattcattgtaagtgtgagtggcatgaaaaatgggtagaaattaggttgtgttctttgtgagctcttgtgctaatttc 21353658  T
Q  200 ttgtaacatatttgtatca 218  Q
    |||||||  ||||||||||    
T  21353657 ttgtaactcatttgtatca 21353639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 441
Target Start/End: Original strand, 30709630 - 30710028
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt---gagtgcgggtgactt 146  Q
    |||||||||||||||| |||||||| |||| |  ||||  || ||| | |||||||| |||||||||||| ||||||||| |   ||||| |||||||      
T  30709630 ttgtaaacaccttggggagtgagatttcatcattggaatgatcaaatagcttccttttgtgttttctcttaggattcattattgagagtgtgggtgacac 30709729  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    ||   |||| ||||||||||   ||| |||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||||| || |||| |||     
T  30709730 aag--atgggtagaaattaggtcttgctcttgtgtaagcttataagctaatttcttgtaactcttttgtaacaatttcatcatagtggattggagggctg 30709827  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgtt--ggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgat 342  Q
     |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||  ||||||||   ||||| | ||| |||||||||||||| ||||||||    
T  30709828 ctctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatctttgt-gctttgat 30709924  T
Q  343 tatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactacttcctttaatctaca 436  Q
    ||||  | || |||||||  | ||||||||||||||||||     |||||||||||| ||||| ||||||  |||||||||| |||||||||  || |||    
T  30709925 tatgcttatggtgttgctctaaacttagatctaggtctgtttttgttgttgttgcttggagac-actttacacattgattaccacttcctttgctccaca 30710023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 32 - 129
Target Start/End: Original strand, 47923728 - 47923824
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt 129  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||| | |||||||||    
T  47923728 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcgtaggattcatt 47923824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 24694990 - 24695101
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||| ||||||| |||  |  ||||  || ||||| |||||||| ||||||||| || ||||||||||     
T  24694990 tcttgggttgggaaacatt-gtaaacaccttgggtggtgagatttcaccattggaatgatcaaaaagcttccttttgtgttttcttttaggattcattga 24695088  T
Q  132 gagtgcgggtgac 144  Q
    ||||| |||||||    
T  24695089 gagtgtgggtgac 24695101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 441
Target Start/End: Original strand, 47924028 - 47924106
Alignment:
Q  365 acttagatctaggtctg--tttgttgttgctt-gagactactttattcattgattactacttcctttaatctacacatct 441  Q
    |||||||||||||||||  ||||||||||||| ||||| ||||||| |||||||||| |||||||||| || ||||||||    
T  47924028 acttagatctaggtctgtttttgttgttgcttggagac-actttatccattgattaccacttcctttactccacacatct 47924106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 1417315 - 1417460
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| |||||||| || ||||||||||| |||  |  | ||| || |||||  || |||| |||||||||||| ||||||||||     
T  1417315 tcttgggttgggaaacatt-gtaaacactttaggtagtgagatttcaccattgaaaggatcaaaaagttttcttttgtgttttctcttaggattcattgg 1417413  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttcttt 178  Q
    ||||| ||||||  | || ||||| |||||||||| | |||||||||    
T  1417414 gagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttt 1417460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 3715843 - 3715921
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| ||| |||| |||||||||||| ||||||||    
T  3715843 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagctttcttttgtgttttctcttaggattcat 3715921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 132 - 346
Target Start/End: Original strand, 4386851 - 4387065
Alignment:
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagt 231  Q
    ||||| ||||||||| || ||||  ||||||||||  ||||||||||||||||   || | ||||||||||||||  |||||||||| | ||||| || |    
T  4386851 gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaacccatttgtatcacttttatcttatt 4386950  T
Q  232 gaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaat-gttggtgtgttgtctccttcccttc-ttgcttatct 329  Q
    | || |||||||  | |||| ||| ||| ||||||||||  || |   |||||||||||||||  ||| ||||||   ||||| | ||| ||||||||||    
T  4386951 ggattggagagc--tgctctctcccccagagtaggtcatactgaactaaactgggtaaacaatctttgatgtgtttgttcctttctttcattgcttatct 4387048  T
Q  330 ttgttgctttgattatg 346  Q
    || ||| ||||||||||    
T  4387049 ttattgttttgattatg 4387065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 32 - 384
Target Start/End: Complemental strand, 26299250 - 26298900
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcc-tttagtgttttctctttggattcattg 130  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||  || ||||| ||||| ||| |||||||||||| ||||| ||||    
T  26299250 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaattatcaaaaagcttcctttttgtgttttctcttaggattaattg 26299152  T
Q  131 tgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcata 229  Q
     || || |||||||  | | ||||| ||||||||||   |||||||| | | ||   ||| | ||||||||||||||   |||||| || | | ||||||    
T  26299151 agattgtgggtgac--acaaaatgggtagaaattaggtcttgttcttgtctaagtttataagctaatttcttgtaactcttttgtaacactttcatcata 26299054  T
Q  230 gtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatc 328  Q
    ||  || |||| ||  | |||| ||| ||| | || ||||| ||| | |||||||||| |||||| ||||||||||   ||||  | ||| |||||||||    
T  26299053 gtagattggagggc--tgctctctcccccagattatgtcatattgaaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcgttgcttatc 26298956  T
Q  329 tttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||| ||||||||||||||  | || |||||||  | |||||||| |||||||||||    
T  26298955 tttattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt 26298900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Complemental strand, 34482174 - 34482106
Alignment:
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
    |||||||| ||||||||| ||||||   || |||| ||||| |||| ||||||||||||||||||||||    
T  34482174 cttatcttggttgctttggttatgtacgtggtgttacttcacactttgatctaggtctgtttgttgttg 34482106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 40844861 - 40844801
Alignment:
Q  84 ggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgac 144  Q
    ||||| || ||||| |||||||| |||||||||||| |||||||||| ||||| |||||||    
T  40844861 ggaaggatcaaaaagcttccttttgtgttttctcttaggattcattgagagtgtgggtgac 40844801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 88
Target Start/End: Complemental strand, 10274620 - 10274589
Alignment:
Q  57 caccttgggtagtgagatctcattagaggaag 88  Q
    ||||||||||||||||||||||||||||||||    
T  10274620 caccttgggtagtgagatctcattagaggaag 10274589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Complemental strand, 47649815 - 47649737
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat 128  Q
    |||||||||||||||||||| |||| |||  |   |||| || ||||| |||||||| |||||||||||| ||||||||    
T  47649815 ttgtaaacaccttgggtagttagatttcaccatttgaaggatcaaaaagcttccttttgtgttttctcttaggattcat 47649737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 25929237 - 25929332
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttccttta--gtgttttctctttggattcattgtgagtgcgggtgac 144  Q
    |||||||||| |||||||||||||| |||  |  ||||| || ||||| |||| |||   |||||||||||| |||||||||||||||| |||||||    
T  25929237 ttgtaaacac-ttgggtagtgagatttcaccatcggaaggatcaaaaagcttctttttttgtgttttctcttaggattcattgtgagtgtgggtgac 25929332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 25929556 - 25929617
Alignment:
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||||||||||||||||||||||||| | || |||||||  | |||||||| ||||| |||||    
T  25929556 cttatctttgttgctttgattatgtttgtggtgttgctctacacttagatttaggtttgttt 25929617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 8126677 - 8126613
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||||||||||| |||||||||||||| || || |||||||  | |||||||| ||||| |||||    
T  8126677 ttgcttatctttattgctttgattatgagtgtggtgttgctctacacttagatttaggtatgttt 8126613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 21711257 - 21711173
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatg 346  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||| | ||||||||||||||    
T  21711257 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctctattgctttgattatg 21711173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 384
Target Start/End: Complemental strand, 27026920 - 27026857
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||||||||||||| ||||||||||||  | || |||||||  | ||||||||||||||||||||    
T  27026920 ttgcttatctttgt-gctttgattatgcttgtggtgttgctctacacttagatctaggtctgttt 27026857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 14964 - 14548
Alignment:
Q  14 tctttgatgagagttt-tttcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgtt 112  Q
    |||||| ||||||||| ||| ||| |||||||| |||||||||| ||||| ||| ||||||| | ||||  ||||| || |||||   ||||||||||||    
T  14964 tctttggtgagagtttattttttgggttgggaaacatttgtaaatacctttggtggtgagattttattattggaagcatcaaaaac--tcctttagtgtt 14867  T
Q  113 ttctctttggattca--ttgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatat 210  Q
    ||||||| |||||||  ||||||||| ||||||||| || ||| | ||| || |||  || |||||||||||||   || | |||||||| ||||| | |    
T  14866 ttctcttaggattcactttgtgagtgtgggtgacttgaaaaataggtaggaactagggttagttctttgtgagcttttaagctaatttctcgtaacctct 14767  T
Q  211 ttgtatcattcttatcatagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctc 310  Q
    |||||||| |||||||||| |  ||||||| | |  ||||| ||  ||| |||| ||||||||| | | || | |||||||||| |||||||||| | ||    
T  14766 ttgtatcactcttatcataattgatcggag-gttgctctctctc--ccatagtatgtcattttggaccaaattaggtaaacaatattggtgtgttttttc 14670  T
Q  311 cttcccttcttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgt-----tgttgcttgagactacttt 405  Q
     ||| ||||||  ||||||||||| ||||||  |||  |  | |||| |||||||||||||| ||||| |||||||     |||||||||||||||||||    
T  14669 tttctcttctt-tttatctttgtttctttgaacatgcttgaggtgtttcttcatacttagatataggtatgtttgttgttgtgttgcttgagactacttt 14571  T
Q  406 attcattgattactacttccttt 428  Q
      | ||||||||  |||||||||    
T  14570 gctaattgattaacacttccttt 14548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 32 - 384
Target Start/End: Complemental strand, 20284351 - 20284001
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||||     
T  20284351 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattga 20284253  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatag 230  Q
    ||||| ||||||  | || || || |||||||||| | |||||| ||||| |||  ||| | ||||||||||||||  | ||||| || | | ||| |||    
T  20284252 gagtgtgggtgatatgaaaaaagggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaacgca-ttgtaacactttcatcttag 20284154  T
Q  231 tgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatct 329  Q
    || || |||| ||  | |||| ||| ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| || |||||||    
T  20284153 tggattggagggc--tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatttcttatct 20284056  T
Q  330 ttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    || ||||||||||||||  | || |||||||  | |||||||| |||||||||||    
T  20284055 ttattgctttgattatgcttgtggtgttgctctacacttagatttaggtctgttt 20284001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 5817122 - 5817278
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||| |||||||| |||||||| |||  |  ||||| || ||||| |||||||| ||||||| |||| |||||||||| ||||| | ||||||| ||    
T  5817122 ttgtaaataccttggggagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttttcttaggattcattgagagtgtgagtgacttgaa 5817221  T
Q  150 taatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaac 206  Q
     ||||||||||||||||  ||||||||||||||||   ||||  |||||||||||||    
T  5817222 aaatggatagaaattaggttttgttctttgtgagctcttatgcaaatttcttgtaac 5817278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 29160050 - 29159715
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattc--attgtgagtgcgggtgactta 147  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||  |||||||| | |||||||  |    
T  29160050 ttgtaaacaccttgggtagtgagatttcaacattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatattgtgagagtgggtgacaca 29159951  T
Q  148 aataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctat 246  Q
    || ||||| ||||||||||   |||||||| ||| |||   || | ||||||||||||||   |||||| || | | ||||||||| || |||||||  |    
T  29159950 aa-aatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagc--t 29159854  T
Q  247 tctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattat 345  Q
     |||| ||| | | | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||  | ||| |||||||||||| |||||||||||||    
T  29159853 gctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgctttgattat 29159754  T
Q  346 gtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |  | || |||||||  | |||||||| |||||||||||    
T  29159753 gcttgtggtgttgctctacacttagatttaggtctgttt 29159715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 157 - 346
Target Start/End: Original strand, 28617184 - 28617372
Alignment:
Q  157 tagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctctttcct 256  Q
    ||||||||||  ||||||||||||||||   || | ||||||||||||||    |||||||| | | ||| ||||| || ||||||||  |||||  ||     
T  28617184 tagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaaccccattgtatcactttcatcttagtggattggagagctgctctct--ccc 28617281  T
Q  257 ccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtg-ttgtctccttcccttcttgcttatctttgttgctttgattatg 346  Q
    ||| |||||||||| ||| | ||||||||||||||||| |||||||| |||| | ||||| ||||||||||||||||||||||||| ||||    
T  28617282 ccagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttttcttcctttcttgcttatctttgttgctttgaatatg 28617372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 56194 - 55860
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt---gagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||| ||| |||||||||||| ||||||||| |   ||||| |||||||      
T  56194 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttctttttgtgttttctcttaggattcattattgagagtgtgggtgacac 56095  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    |||  |||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||||| || |||| |||     
T  56094 aaa--atgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctg 55997  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc--ttgcttatctttgttgctttgatt 343  Q
     |||||   | ||| | |||||||| ||| | |||||||||| || ||| ||||||||||   ||||| |||||  |||||||||||||| |||||||||    
T  55996 ctctct---ccccagattaggtcatattggaccgaactgggtcaataatcttggtgtgtttgttcctttccttccattgcttatctttgt-gctttgatt 55901  T
Q  344 atgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    |||  | || |||||||  ||||||||||||||||||||||    
T  55900 atgcttgtggtgttgctctatacttagatctaggtctgttt 55860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 391
Target Start/End: Original strand, 2647551 - 2647888
Alignment:
Q  52 gtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaata 151  Q
    |||| |||||||||||||||||| |||  |  ||||| || ||||| |||| ||| |||||||||||| |||||||||| ||||| |||||||  | | |    
T  2647551 gtaagcaccttgggtagtgagatttcaccattggaaggatcaaaaaacttcattttgtgttttctcttaggattcattgagagtgtgggtgac--acaaa 2647648  T
Q  152 atggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattctc 250  Q
    |||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||||| || |||| ||  | |||    
T  2647649 atgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggc--tgctc 2647746  T
Q  251 tttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgt 349  Q
    | ||| ||| | |||||||| |||   |||| ||||| |||||| ||| ||||||   ||||| | ||| |||||||||||| ||||||||||||||  |    
T  2647747 tctcccccagaataggtcatattgggccgaattgggtcaacaatcttgatgtgtttgttcctttctttcattgcttatctttattgctttgattatgctt 2647846  T
Q  350 ctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
     || |||||||  | |||||||| ||||||||||| ||||||    
T  2647847 gtggtgttgctctaaacttagatttaggtctgttttttgttg 2647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 60 - 215
Target Start/End: Complemental strand, 3047489 - 3047335
Alignment:
Q  60 cttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataatggatag 159  Q
    ||||||||||||||| |||| |  ||||| || ||||| |||||||| ||||||| ||||  ||||||||| ||||| |||||||||||| ||||| |||    
T  3047489 cttgggtagtgagatttcatcattggaaggatcaaaaagcttccttttgtgttttatcttaagattcattgagagtgtgggtgacttaaa-aatgggtag 3047391  T
Q  160 aaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgta 215  Q
    |||||||   |||||||||||||||   || ||| ||||||||||||  |||||||    
T  3047390 aaattaggtcttgttctttgtgagcttttaagttgatttcttgtaactcatttgta 3047335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 23402848 - 23403022
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||  || ||||| |||||||| |||||||||||| ||||||||||     
T  23402848 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaatgatcaaaaagcttccttttgtgttttctcttaggattcattga 23402946  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaac 206  Q
    ||||| | ||||  | || ||||| |||||||||| | |||||| ||||| |||  ||| | ||||||||||||||    
T  23402947 gagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 23403022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 9185009 - 9185153
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||  |||||||||||| |||||||||      
T  9185009 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa 9185107  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctt 177  Q
    ||||| ||||||  | || ||||| |||||||||| | ||||||||    
T  9185108 gagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 9185153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 9189842 - 9189986
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||  |||||||||||| |||||||||      
T  9189842 tcttgggttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttgtgtgttttctcttaggattcattaa 9189940  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttctt 177  Q
    ||||| ||||||  | || ||||| |||||||||| | ||||||||    
T  9189941 gagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 9189986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 2580635 - 2580508
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  | ||| || ||||| |||||||| |||||||||||| |||||||||| ||||| ||||||  | ||    
T  2580635 ttgtaaacaccttgggtagtgagatttcaccattgaaaggatcaaaaagcttccttttgtgttttctcttaggattcattgagagtgtgggtgatatgaa 2580536  T
Q  150 taatggatagaaattagaatttgttctt 177  Q
     ||||| |||||| ||| | ||||||||    
T  2580535 aaatgggtagaaactaggacttgttctt 2580508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 9235417 - 9235591
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgt 131  Q
    ||||| |||||||| |||| ||||||||||||| |||||| || |||  |  | ||| || ||||| |||||||| |||||||||||| |||||| |||     
T  9235417 tcttgggttgggaaacatt-gtaaacaccttggatagtgatatttcaccattgcaaggatcaaaaagcttccttttgtgttttctcttaggattcgttga 9235515  T
Q  132 gagtgcgggtgacttaaataatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaac 206  Q
    ||||||||||||  | || ||||| |||||||||| | |||||| ||||| |||  ||| | ||||||||||||||    
T  9235516 gagtgcgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 9235591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 441
Target Start/End: Complemental strand, 49091924 - 49091512
Alignment:
Q  33 cttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcatt--- 129  Q
    |||| |||||||| |||| | ||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| |||||||||       
T  49091924 cttgggttgggaaacatt-gaaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcattatg 49091826  T
Q  130 gtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcat 228  Q
    | ||||| |||||||  | | ||||| ||||||||||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | |||||    
T  49091825 gagagtgtgggtgac--acagaatgggtagaaattaggtcttgttcttgtgtaagcttataaggtaatttcttgtaactcttttgtaacactttcatcat 49091728  T
Q  229 agtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttat 327  Q
    |||| || |||||| |  ||||||  | ||| | |||||||| ||| |   |||||||| |||||| |||||| |||   ||||| | ||| ||||||||    
T  49091727 agtggattggagagttgctctctt--ccccagattaggtcatattggactaaactgggtcaacaatcttggtgcgtttgttcctttctttcattgcttat 49091630  T
Q  328 ctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt-----ttgttgttgctt-gagactactttattcattgattactac 421  Q
    ||||| |||||||||||||  | || |||||||  | ||||| ||||||||||||     |||||||||||| ||||| |||||||  ||||||||| ||    
T  49091629 ctttg-tgctttgattatgcttgtggtgttgctctacacttaaatctaggtctgtttttgttgttgttgcttggagac-actttatctattgattaccac 49091532  T
Q  422 ttcctttaatctacacatct 441  Q
    |||||||  || ||||||||    
T  49091531 ttcctttgctccacacatct 49091512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 4796520 - 4796852
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||| ||| |||||||||||| |||||||||| || ||  ||||||  |||    
T  4796520 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttctttttgtgttttctcttaggattcattgagaatgtaggtgacacaaa 4796619  T
Q  150 taatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
      |||| || |||| ||   |||||||| ||| |||  ||| | ||||||||||||||   |||||| || | | ||||||||| ||  ||| |||  |     
T  4796620 --atgggtataaatgaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacaatttcatcatagtggatttgagggctgctt 4796717  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgt 347  Q
    |||  || ||| | |||||||||||| | |||||||||| |||||| ||||||||||   ||||| |  || |||||||||||| ||||||||||||||     
T  4796718 tct--cccccagattaggtcattttggaccgaactgggttaacaatcttggtgtgtttgttcctttctctcattgcttatctttattgctttgattatgc 4796815  T
Q  348 gtctgatgttgcttcatacttagatctaggtctgttt 384  Q
     | || |||||||  | |||||||| |||||||||||    
T  4796816 ttgtggtgttgctctacacttagatttaggtctgttt 4796852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 45685601 - 45685727
Alignment:
Q  54 aaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaataat 153  Q
    ||||||||| | |||| ||||||||| | || ||| |||||||| ||| ||||  ||||||||||| |||||||||| || |  | |||||||||| |||    
T  45685601 aaacacctttgatagtcagatctcatcaaagaaaggataaaaaaactttctttcttgttttctcttaggattcattgcgactttgagtgacttaaaaaat 45685700  T
Q  154 ggatagaaattagaatttgttctttgt 180  Q
    ||||||||||||   ||||||||||||    
T  45685701 ggatagaaattaaggtttgttctttgt 45685727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 384
Target Start/End: Original strand, 33332302 - 33332635
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaaa 149  Q
    ||||||||| ||||||||||||||| |||  |  ||||| || ||||| ||||| || |||||||||||| ||| |||||| ||||| | |||| |  ||    
T  33332302 ttgtaaacatcttgggtagtgagatttcaccattggaaggatcaaaaagcttccctttgtgttttctcttaggaatcattgagagtgtgcgtga-tacaa 33332400  T
Q  150 taatggatagaaattagaatttgttc-tttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
     ||||  ||||||||||   |||||| ||||| |||  ||| | ||||||||||||||   |||||| || | | ||| ||||| || |||| ||  | |    
T  33332401 aaatgagtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcttagtggattggagggc--tgc 33332498  T
Q  249 tctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgt 347  Q
    ||| ||| ||| | |||||||| ||  |||||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||| ||||||||||     
T  33332499 tctctcccccagattaggtcatattagatcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgatttgattatgc 33332598  T
Q  348 gtctgatgttgcttcatacttagatctaggtctgttt 384  Q
     | || |||||||  | |||||||| ||||| |||||    
T  33332599 ttatggtgttgctctacacttagatttaggtttgttt 33332635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 250
Target Start/End: Complemental strand, 761416 - 761219
Alignment:
Q  52 gtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctt---tggattcattgtgagtgcgggtgacttaa 148  Q
    |||| ||| ||| |||||||||||||||||||||||| || |||||  ||| |||||||||  |||||    |||| ||||||||||     |||||| |    
T  761416 gtaagcactttgagtagtgagatctcattagaggaaggatcaaaaagtttcatttagtgttacctcttaggaggatgcattgtgagt----atgacttga 761321  T
Q  149 ataatggatagaaattagaatttgttctttgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagctattc 248  Q
    | ||||| ||||||||||  ||| ||||||||||||   |  | | |||| ||||||| ||||||| |||||| |  ||||||| |||||||||||| ||    
T  761320 aaaatgggtagaaattagtgttttttctttgtgagcttttgagctcatttattgtaacctatttgtgtcattccttacatagtggatcggagagctagtc 761221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 428
Target Start/End: Original strand, 9190071 - 9190241
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||  | ||| |||||||||||| |||||||| |||||  | || |||||||     
T  9190071 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgctttgtttatgcttgtggtgttgctc 9190170  T
Q  362 catacttagatctaggtctgt----ttgttgttgctt-gagactactttattcattgattactacttccttt 428  Q
     | |||||||||||||| |||    |||||||||||| ||||| ||||||  |||||||||| |||||||||    
T  9190171 tacacttagatctaggtttgttttgttgttgttgcttggagac-actttacacattgattaccacttccttt 9190241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 46516140 - 46516237
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcattg 130  Q
    ||||| |||||||| |||| ||||||||||||||||||||||| |||  |  ||||| || ||||| |||| ||| ||||||||||||  |||||||||    
T  46516140 tcttgagttgggaaacatt-gtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttcattttgtgttttctcttaagattcattg 46516237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 391
Target Start/End: Original strand, 46516373 - 46516502
Alignment:
Q  263 taggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatgtgtctgatgttgctt 361  Q
    |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| ||| |||||| | ||||||||||||||  | || ||||||||    
T  46516373 taggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatctctattgctttgattatgcttttggtgttgctt 46516472  T
Q  362 catacttagatctaggtctgtttgttgttg 391  Q
     | |||||||| || |||||||| ||||||    
T  46516473 tacacttagatttaagtctgttttttgttg 46516502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 480
Target Start/End: Complemental strand, 27984460 - 27984294
Alignment:
Q  323 cttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgtttgttgtt------gcttgagactactttattcattgat- 415  Q
    |||||||||||| |||| | ||||| | || | |||||||| |||||||| || || |||||||||||      |||| ||||||||||||||||||||     
T  27984460 cttatctttgtttctttaaatatgtttgtgttattgcttcacacttagatataagtttgtttgttgttatcgttgcttaagactactttattcattgatt 27984361  T
Q  416 -tactacttcctttaatctacacatctaagttctattggtatta-ttattagtttgaattcacaaca 480  Q
     ||||| |||||||  || | |||| |||||| ||||| | | | ||||| ||||||||||||||||    
T  27984360 atactaattcctttgctccaaacatataagttttattgatgtgatttatttgtttgaattcacaaca 27984294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 390
Target Start/End: Original strand, 23575488 - 23575564
Alignment:
Q  316 cttcttgcttatctttgttgctttgattatgtg--tctgatgttgcttcatacttagatctaggtctgtttgttgtt 390  Q
    |||||| |||||||| ||||||||| || | ||  ||||| | ||||||| |||||||||||||| |||||||||||    
T  23575488 cttctttcttatcttagttgctttggttttatgcctctgacgatgcttcacacttagatctaggtttgtttgttgtt 23575564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 27984686 - 27984633
Alignment:
Q  93 aaaaatcttcctttagtgttttctctttggattcattgtgagtgcgggtgactt 146  Q
    ||||| |||| |||||| ||||||||  |||||||||||||||| |||||||||    
T  27984686 aaaaaccttcatttagtattttctctaaggattcattgtgagtgtgggtgactt 27984633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 320 - 428
Target Start/End: Original strand, 9185284 - 9185396
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt----ttgttgttgctt-gagactactttattcattga 414  Q
    |||||||||||| |||||||| |||||  | || |||| ||  | ||||||||||||||||||    |||||||||||| ||||| ||||||  ||||||    
T  9185284 ttgcttatctttattgctttgtttatgcttgtggtgtttctctacacttagatctaggtctgttttgttgttgttgcttggagac-actttacacattga 9185382  T
Q  415 ttactacttccttt 428  Q
    |||| |||||||||    
T  9185383 ttaccacttccttt 9185396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 384
Target Start/End: Complemental strand, 5930 - 5595
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat---tgtgagtgcgggtgactt 146  Q
    ||||||||||||||||||||||||| |||  |  ||||| || ||||| |||||||| |||||||||||| ||||||||   || ||||| |||||||      
T  5930 ttgtaaacaccttgggtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttctcttaggattcatcattgagagtgtgggtgacac 5831  T
Q  147 aaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatcatagtgaatcggagagcta 245  Q
    |||  |||  |||||||||    |||||||| ||| |||  ||| | |||||||||||| |   |||||| || | | ||||||||| || | || |||     
T  5830 aaa--atgagtagaaattaagtcttgttcttgtgtaagcttataagctaatttcttgtatctcttttgtaacactttcatcatagtggattgaagggctg 5733  T
Q  246 ttctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgatta 344  Q
     |||||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||||||| ||||||||||||    
T  5732 ctctct--cccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 5635  T
Q  345 tgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||  | || |||| ||  | ||||||||||||||||||||    
T  5634 tgcttgtggtgtttctctacacttagatctaggtctgttt 5595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 384
Target Start/End: Complemental strand, 2756 - 2404
Alignment:
Q  32 tcttgtgttgggaaccatttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaatcttcctttagtgttttctctttggattcat--- 128  Q
    ||||| |||||||| |||| |||||||||||| |||||||||| |||  |  ||||| || ||||| |||||||| ||||||| |||| ||||||||       
T  2756 tcttgggttgggaaacatt-gtaaacaccttgcgtagtgagatttcaccattggaaggatcaaaaagcttccttttgtgttttatcttaggattcatcat 2658  T
Q  129 tgtgagtgcgggtgacttaaataatggatagaaattagaatttgttctt-tgtgagcgaatatgttaatttcttgtaacatatttgtatcattcttatca 227  Q
    || ||||| |||||||  |||  |||| ||||||||||   |||||||| ||| |||  ||| | ||||||||| |||    |||||| || | | ||||    
T  2657 tgagagtgtgggtgacacaaa--atgggtagaaattagttcttgttcttgtgtaagcttataagctaatttcttataattcttttgtaacactttcatca 2560  T
Q  228 tagtgaatcggagagctattctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgctta 326  Q
    ||||| || |||| |||  | |||  || ||| | |||||||| ||| | |||||||||| |||||| ||||||||||   ||||| | ||| |||||||    
T  2559 tagtggattggagggctgctgtct--cccccagattaggtcatattggagcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgctta 2462  T
Q  327 tctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgttt 384  Q
    ||||| ||||||||||||||  | || ||||| |  | ||||||||||||||||||||    
T  2461 tctttattgctttgattatgcttgtggtgttgttctacacttagatctaggtctgttt 2404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 320 - 441
Target Start/End: Complemental strand, 85659 - 85535
Alignment:
Q  320 ttgcttatctttgttgctttgattatgtgtctgatgttgcttcatacttagatctaggtctgt----ttgttgttgctt-gagactactttattcattga 414  Q
    |||||||||||||| |||||| |||||  | ||||||||||  | ||||||||||||||||||    |||||||||||| ||||| ||||||  ||||||    
T  85659 ttgcttatctttgt-gctttggttatgcttgtgatgttgctctacacttagatctaggtctgttttattgttgttgcttggagac-actttacacattga 85562  T
Q  415 ttactacttcctttaatctacacatct 441  Q
    |||| |||||||||  |||||||||||    
T  85561 ttaccacttcctttgctctacacatct 85535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 391
Target Start/End: Complemental strand, 10778 - 10634
Alignment:
Q  248 ctctttcctccaaagtaggtcattttgcatcgaactgggtaaacaatgttggtgtgttgtctccttcccttc-ttgcttatctttgttgctttgattatg 346  Q
    |||| ||| ||||| |||||||| ||| | |||||||||| || ||| ||||||||||   ||||  | ||| |||||||||||| ||||||||||||||    
T  10778 ctctctcccccaaattaggtcatattggaccgaactgggtcaataatcttggtgtgtttgttcctctctttcattgcttatctttattgctttgattatg 10679  T
Q  347 tgtctgatgttgcttcatacttagatctaggtctgtttgttgttg 391  Q
      | || |||||||  | |||||||| ||||||||||| ||||||    
T  10678 cttgtggtgttgctctacacttagatttaggtctgttttttgttg 10634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 23777 - 23643
Alignment:
Q  50 ttgtaaacaccttgggtagtgagatctcattagaggaagaataaaaaat-cttcctttagtgttttctctttggattcattgtgagtgcgggtgacttaa 148  Q
    |||||| |||||||||||||||||| |||  |   |||| ||||||||  | || ||| |||||||||||| |||||||||||||||| |  |||| | |    
T  23777 ttgtaatcaccttgggtagtgagatgtcaccattagaaggataaaaaaggcatcattttgtgttttctcttaggattcattgtgagtgtgtctgacatga 23678  T
Q  149 ataatggatagaaattagaatttgttctttgtgagc 184  Q
    | ||||| |||||||||||  ||||| |||||||||    
T  23677 a-aatgggtagaaattagatcttgttttttgtgagc 23643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University