View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15182_low_96 (Length: 243)

Name: NF15182_low_96
Description: NF15182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15182_low_96
NF15182_low_96
[»] chr2 (2 HSPs)
chr2 (105-226)||(3108775-3108893)
chr2 (10-93)||(3108618-3108701)
[»] chr7 (1 HSPs)
chr7 (27-73)||(32279307-32279353)
[»] chr5 (1 HSPs)
chr5 (28-73)||(27554936-27554981)
[»] chr3 (2 HSPs)
chr3 (32-69)||(42466974-42467011)
chr3 (27-84)||(50700046-50700103)
[»] chr4 (1 HSPs)
chr4 (35-75)||(53406500-53406540)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 3108775 - 3108893
Alignment:
Q  105 gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttgtgccttcaatttttgtgtatgtaggttttcaggggaaaagagtatgacga 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||   ||    
T  3108775 gaggaaataaatgtaaatttgtaagtgctttggagtcctaaaatcttttatgtcttcaatttttgtgtatgtaggttttcaggggaaaagagtat---ga 3108871  T
Q  205 taacatggagtttggtcggatg 226  Q
    |||||||||||||| |||||||    
T  3108872 taacatggagtttgatcggatg 3108893  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 3108618 - 3108701
Alignment:
Q  10 ataattctcttaaatagctctctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatgcattaataa 93  Q
    |||| |||||||||||| ||| | | ||||||||||||||||||| |||  ||| ||||| |||||||||||||||||||||||    
T  3108618 ataactctcttaaatagttcttttgactaaataatatattttaatcatttattcgtcattctcttttctaaaatgcattaataa 3108701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 32279353 - 32279307
Alignment:
Q  27 ctctctcgtctaaataatatattttaattattcgttcatcattttct 73  Q
    ||||||| | |||||||| |||||||||||||| |||||||||||||    
T  32279353 ctctctcatttaaataatttattttaattattcattcatcattttct 32279307  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 27554981 - 27554936
Alignment:
Q  28 tctctcgtctaaataatatattttaattattcgttcatcattttct 73  Q
    |||||| |||||||||| |||||||||||||  |||||||||||||    
T  27554981 tctctcatctaaataatctattttaattatttattcatcattttct 27554936  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 42467011 - 42466974
Alignment:
Q  32 tcgtctaaataatatattttaattattcgttcatcatt 69  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  42467011 tcgtctaaataatttattttaattattcattcatcatt 42466974  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 50700046 - 50700103
Alignment:
Q  27 ctctctcgtctaaataatatattttaattattcgttcatcattttcttttctaaaatg 84  Q
    |||||||||||||||||| ||||||||| |||  ||||||||| |||  |||||||||    
T  50700046 ctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatg 50700103  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 53406540 - 53406500
Alignment:
Q  35 tctaaataatatattttaattattcgttcatcattttcttt 75  Q
    |||||||||| |||||||||||||  |||||||||||||||    
T  53406540 tctaaataatttattttaattatttattcatcattttcttt 53406500  T

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