View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_high_10 (Length: 378)
Name: NF15183_high_10
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 37131226 - 37130862
Alignment:
| Q |
1 |
aacaagattaagaatagagaataaccgtttggagaagttgctatcagaagtaacagcaatcttgctcttttcccttgaaacagtaacagcatcaccaaga |
100 |
Q |
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| T |
37131226 |
aacaagactaagaatagagaataaccgtttggagaagttgctatcagaagtaacagcaatcttgctcttttcccttgaaacagtaacagcatcaccaaga |
37131127 |
T |
|
| Q |
101 |
gcaccgggtttaccaccaaccttaattctctcttgaaggaacttttcgagagaagcgatgtccatgatcttgtcttcaacgggcttggcacagtcaatgg |
200 |
Q |
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| T |
37131126 |
gcaccgggtttaccaccaaccttaattctctcttgaaggaacttttcgagagaagcgatgtccatgatcttgtcttcaacgggcttggcacagtcaatgg |
37131027 |
T |
|
| Q |
201 |
tgaatgttatcactcccttcttctttccctttgaaccagctgcacctactcgacccattttgtcttctatgaatgaatctctgaaaacaaaatcgagatt |
300 |
Q |
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| T |
37131026 |
tgaatgttataactcccttcttctttccctttgaaccagctgcatctactcgacccattttgtcttctatgaatgaatctctgaaaacaaaatcgagatt |
37130927 |
T |
|
| Q |
301 |
caatttcagttttggtggttcaagaaattatgtttaattgaaatgaaaggggaaaagagagaagt |
365 |
Q |
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| T |
37130926 |
caatttcagttttggtggttcaagaaattatgattaattgaaatgaaaggggaaaagaaagaagt |
37130862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 46406686 - 46406468
Alignment:
| Q |
24 |
accgtttggagaagttgctatcagaagtaacagcaatcttgctcttttcccttgaaacagtaacagcatcaccaagagcaccgggtttaccaccaacctt |
123 |
Q |
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|||| ||||| ||||| || ||||| ||||||| ||||||||||| || | | ||| | |||| |||||| |||||||| | ||| ||||| ||||| |
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| T |
46406686 |
accgcttggaaaagttactgtcagaggtaacagtgatcttgctcttctcacgggtaacggagacagaatcaccgagagcaccagcttttccaccgacctt |
46406587 |
T |
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| Q |
124 |
aattctctcttgaaggaacttttcgagagaagcgatgtccatgatcttgtcttcaacgggcttggcacagtcaatggtgaatgttatcactcccttcttc |
223 |
Q |
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|| ||||||||||| ||||| || |||||||| |||||||||||||||||||| || ||||| ||||||||||||||||| ||| | ||||||||| |
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| T |
46406586 |
gatcctctcttgaagaaacttctcaagagaagcaatgtccatgatcttgtcttccactggcttagcacagtcaatggtgaaggtt---gcacccttcttc |
46406490 |
T |
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| Q |
224 |
tttccctttgaaccagctgcac |
245 |
Q |
| |
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|||||||| | ||||||||||| |
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| T |
46406489 |
tttcccttggcaccagctgcac |
46406468 |
T |
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