View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15183_high_15 (Length: 344)
Name: NF15183_high_15
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 22607572 - 22607875
Alignment:
| Q |
19 |
atctaggttcaaaatataatattnnnnnnngaaaagtactaatacaaatcaatacgcaatcctcttctttaagatacattaagattttccttcacttctc |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22607572 |
atctaggttcaaaatataatattaataaaagaaaagtactaatacaaatcaatacgcaatcctcttctttaagatacattaagattttccttcacttctc |
22607671 |
T |
|
| Q |
119 |
ataaatcttctgattcttctctcttggttttgctgctttggttaagacagaaacaagaacctctcttacattatgtgtgttatgttttagtacacaaaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22607672 |
ataaatcttctgattcttctctcttggttttgctgctttggtaaagacagaaacaagaacctctcttacattatgtgtgttatgttttagtacacaaaca |
22607771 |
T |
|
| Q |
219 |
ttcttaacacacattatcaatagttatgcaaagtttcaaaacagctcaatcaaactctcaactctattgccaccaacccttcttgcttaggtatgtttgt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22607772 |
ttcttaacacacattatcaatagttatgcaaagcttcaaaacagctcaatcaaactctcaactctattgccaccaacccttcttgcttaggtatgtttgt |
22607871 |
T |
|
| Q |
319 |
gtag |
322 |
Q |
| |
|
|||| |
|
|
| T |
22607872 |
gtag |
22607875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University