View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_high_17 (Length: 279)
Name: NF15183_high_17
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 7e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 15738103 - 15737896
Alignment:
| Q |
52 |
ttggatgttatacatttaatttaatgttacaatacttcacgagaatcaataaactaatctcttgtaatcacttggtatgacacaacactaatcttctact |
151 |
Q |
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| T |
15738103 |
ttggatgttatacatttaatttaatgttacaatacttcacgagaatcaataaactaatctcttgtagtcacttg-tatgacac-----tagttttctact |
15738010 |
T |
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| Q |
152 |
tcaattcttctgcaagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaatataaagttcaagacatttag |
251 |
Q |
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| T |
15738009 |
tcaattcttctgcaagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaagataaagttcaagacatttag |
15737910 |
T |
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| Q |
252 |
tatagccaaaaatg |
265 |
Q |
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||| |||||||||| |
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| T |
15737909 |
tattgccaaaaatg |
15737896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 44 - 265
Target Start/End: Complemental strand, 15730509 - 15730293
Alignment:
| Q |
44 |
aaatacaattggatgttatacatttaatttaatgttacaatacttcacgagaatcaataaactaatctcttgtaatcacttggtatgacacaacactaat |
143 |
Q |
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| T |
15730509 |
aaatacatttggatgttatacatttaat-----gttacaatactacccaagaaccaataaactaatctcttggaatcacttggtatgacacaacacttgt |
15730415 |
T |
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| Q |
144 |
cttctacttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaatataaagttcaag |
243 |
Q |
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| T |
15730414 |
cttctccttcaattcttctgcaagcacttttatggaatctgaaatttcagctctatatacataatacttcgtaacaatacaaaagaagataaagttcaag |
15730315 |
T |
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| Q |
244 |
acatttagtatagccaaaaatg |
265 |
Q |
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| T |
15730314 |
acatttagtatagccaaaaatg |
15730293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 15766960 - 15766859
Alignment:
| Q |
164 |
caagcacttttatggaatctgaaatttcagctctatatacataatactttgtaacaatacaaaagaatataaagttcaagacatttagtatagccaaaaa |
263 |
Q |
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|||| ||||||| |||| |||||| |||||||||| ||||| |||||| ||||| |||||| | |||||| | ||||||||||||||||||||| |
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| T |
15766960 |
caagaacttttagagaatttgaaatgtcagctctatgcacatagaactttgaaacaaccacaaagaagacaaagtttatgacatttagtatagccaaaaa |
15766861 |
T |
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| Q |
264 |
tg |
265 |
Q |
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|| |
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| T |
15766860 |
tg |
15766859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 15756030 - 15755990
Alignment:
| Q |
225 |
aaagaatataaagttcaagacatttagtatagccaaaaatg |
265 |
Q |
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|||||| | ||||||||||||||||||||| |||||||||| |
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| T |
15756030 |
aaagaagacaaagttcaagacatttagtatggccaaaaatg |
15755990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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