View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_high_18 (Length: 278)

Name: NF15183_high_18
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_high_18
NF15183_high_18
[»] chr4 (1 HSPs)
chr4 (1-278)||(24228804-24229086)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 24228804 - 24229086
Alignment:
Q  1 aaactgtaccatgattcctagttaatatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttgaagtcaatgtaca----ta 96  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    ||    
T  24228804 aaactgtaccatgattcctagtta-tatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttggagtcaatgtacatacata 24228902  T
Q  97 catgcaaatggaaacaaagaatagtacatatggtttgaagcaagctggtagatgaacacaactcagttttaccaacctgttacaggacacaacaaagtag 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  24228903 catgcaaatggaaacaaagaatagtacatatggtttgaagctagctggtagattaacacaactcagttgtaccaacctgttacatgacacaacaaagtag 24229002  T
Q  197 ccatgaatgttttccacgtggaaccactaccattaagcgatctagctgttggagctac--tagtcatacaaagttgacgcagct 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||||||||| ||||||    
T  24229003 ccatgaatgttttccacgtggaaccactaccattaagctatctagctggaggagctactatagtcatacaaagttgatgcagct 24229086  T

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