View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_high_19 (Length: 264)
Name: NF15183_high_19
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9677498 - 9677252
Alignment:
| Q |
1 |
cgattataaggccactctcgcttctgttgatttcataaacaaggtatgtttgtgtccctcttttcattgctatccatgctgtgcttttattttgtgttaa |
100 |
Q |
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| T |
9677498 |
cgattataaggccactctcgcttctgttgatttcataaacaaggtatgtttgtgtcgctcttttcattgctatccatgctgtgcttttattttgtgttaa |
9677399 |
T |
|
| Q |
101 |
ttgattaattaatggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttctatttgaagcttttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9677398 |
ttgattaattaatggatctctaccttcacaaacaattagtttattttatttcataacctaatttagagcaaattttattttctatttgaagcttttgtgt |
9677299 |
T |
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| Q |
201 |
tgttcgtcactaataaatcgtaagcatttagttgagagtcggttctc |
247 |
Q |
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| T |
9677298 |
tgttcgtcactaataaatagtaagcatttagttgagagtcggttctc |
9677252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 50328072 - 50328104
Alignment:
| Q |
140 |
tttattttatttcataacctaatttagagcaaa |
172 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50328072 |
tttattttatttcataacctaatttagagcaaa |
50328104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 50328189 - 50328218
Alignment:
| Q |
143 |
attttatttcataacctaatttagagcaaa |
172 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
50328189 |
attttatttcataacctaatttagagcaaa |
50328218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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