View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_high_20 (Length: 256)

Name: NF15183_high_20
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_high_20
NF15183_high_20
[»] chr4 (10 HSPs)
chr4 (133-239)||(19524367-19524473)
chr4 (13-105)||(14149960-14150052)
chr4 (15-105)||(48525418-48525508)
chr4 (18-105)||(41277313-41277399)
chr4 (58-105)||(5817380-5817427)
chr4 (59-105)||(25783909-25783955)
chr4 (18-105)||(9118515-9118602)
chr4 (32-105)||(17044112-17044184)
chr4 (32-105)||(39631010-39631082)
chr4 (32-105)||(45995895-45995967)
[»] chr6 (4 HSPs)
chr6 (14-105)||(16718088-16718179)
chr6 (22-105)||(12748311-12748394)
chr6 (59-105)||(9521812-9521858)
chr6 (32-105)||(14313987-14314058)
[»] chr5 (7 HSPs)
chr5 (14-105)||(12248364-12248455)
chr5 (14-105)||(43100208-43100299)
chr5 (14-105)||(8076346-8076437)
chr5 (14-105)||(33687738-33687829)
chr5 (32-105)||(11247302-11247374)
chr5 (32-105)||(13988357-13988429)
chr5 (42-102)||(35906103-35906163)
[»] chr1 (10 HSPs)
chr1 (14-104)||(48489540-48489630)
chr1 (15-105)||(47571563-47571653)
chr1 (14-104)||(29731279-29731369)
chr1 (15-105)||(15066020-15066110)
chr1 (27-105)||(19989341-19989418)
chr1 (32-105)||(44797467-44797539)
chr1 (42-105)||(526909-526972)
chr1 (42-105)||(13276474-13276537)
chr1 (32-105)||(1995062-1995134)
chr1 (57-105)||(39858471-39858519)
[»] chr7 (10 HSPs)
chr7 (14-103)||(37536317-37536406)
chr7 (15-105)||(28713769-28713859)
chr7 (15-105)||(38349459-38349549)
chr7 (146-239)||(41279912-41280005)
chr7 (146-239)||(41286968-41287061)
chr7 (16-105)||(13768462-13768552)
chr7 (42-105)||(31741152-31741215)
chr7 (15-105)||(43359064-43359154)
chr7 (32-105)||(30922710-30922782)
chr7 (32-105)||(46576242-46576314)
[»] chr8 (7 HSPs)
chr8 (14-106)||(11904944-11905036)
chr8 (14-105)||(35200647-35200738)
chr8 (14-95)||(10592067-10592148)
chr8 (18-105)||(41075596-41075682)
chr8 (42-105)||(28898104-28898167)
chr8 (18-105)||(31774822-31774908)
chr8 (32-105)||(14342187-14342259)
[»] chr3 (7 HSPs)
chr3 (15-105)||(36674519-36674609)
chr3 (58-105)||(46135660-46135707)
chr3 (42-105)||(23004874-23004937)
chr3 (32-105)||(38247908-38247979)
chr3 (32-105)||(48034808-48034880)
chr3 (32-105)||(50989313-50989385)
chr3 (32-105)||(51092445-51092517)
[»] chr2 (5 HSPs)
chr2 (15-105)||(40216501-40216591)
chr2 (32-105)||(4434592-4434664)
chr2 (32-105)||(13696965-13697037)
chr2 (32-105)||(17823689-17823761)
chr2 (42-102)||(24475714-24475774)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 19524367 - 19524473
Alignment:
Q  133 cagagaacaatatcagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19524367 cagagaacaatatcagacaaaatgagctatctaagggatgcaataattatgacaatactacaatcatataattacaaatgaatattgttaattatataaa 19524466  T
Q  233 atgttga 239  Q
    |||||||    
T  19524467 atgttga 19524473  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 14150052 - 14149960
Alignment:
Q  13 tcaagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  14150052 tcaagaaactcatcttttgtgtctctcaaacactttcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 14149960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 48525418 - 48525508
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  48525418 aagaaacttatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 48525508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 41277313 - 41277399
Alignment:
Q  18 aaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||| ||||||||||||||| ||| | |||||||| ||||||||||||||||||| ||||||||| |||  | ||||||||||||    
T  41277313 aaactcaccttttgtgtctctcacacagtctcacatgatagtggtacaatgtgtgtat-gagaaaatggtgtctacgaaacattatcc 41277399  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 5817427 - 5817380
Alignment:
Q  58 gtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  5817427 gtggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcc 5817380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 25783955 - 25783909
Alignment:
Q  59 tggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||| ||||||||||| |||| |||||||||||||||||||||    
T  25783955 tggtacaacgtgtgtatagaaaaaaagatgttcatgaaacattatcc 25783909  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 9118602 - 9118515
Alignment:
Q  18 aaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||| |||  |||||||||  |||| ||||||||| |||||||| ||| ||||| ||| ||| | ||||||||||| |||||||    
T  9118602 aaactcatatttattgtctctcacgcactctcacatgaatgtggtacattgtatgtatggaggaaagggtgttcatgaaatattatcc 9118515  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 17044112 - 17044184
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  17044112 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17044184  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 39631082 - 39631010
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| |||||| | ||||||||||||||| ||| || ||||  |||| |||||||||||||||    
T  39631082 tgtctctcacacactctcacat-agagtggtacaatgtgtatatggaaaaaagtatgtacatgaaacattatcc 39631010  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 45995967 - 45995895
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  45995967 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaaatgtgtacatgaaacattatcc 45995895  T

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Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 16718088 - 16718179
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  16718088 caagaaactcatcttttgtgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 16718179  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 12748311 - 12748394
Alignment:
Q  22 tcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| | |||| ||||||||||||||    
T  12748311 tcatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtataaagaaaagggtgtttatgaaacattatcc 12748394  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 9521858 - 9521812
Alignment:
Q  59 tggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||| ||||||| ||||| |||||||||||||||    
T  9521858 tggtacaatgtgtgtatggagaaaaggatgtacatgaaacattatcc 9521812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 14314058 - 14313987
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| |||||| ||||||||||||||||||||| || ||| || ||| |||||||||||||||    
T  14314058 tgtctctcacacactctcacat-aaagtggtacaatgtgtgtatggaaaaagtg-tgtacatgaaacattatcc 14313987  T

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Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 12248364 - 12248455
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  12248364 caagaaactcatcttttgtgtctctcaaacactatcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 12248455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 43100299 - 43100208
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  43100299 caagaaattcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatcc 43100208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 8076346 - 8076437
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||| | ||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  8076346 caagaaatttatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtatgtatagagaaaagggtgttcatgaaacattatcc 8076437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 33687738 - 33687829
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||||| ||| ||||||||||| |  ||||||||||||||||||    
T  33687738 caagaaactcatcttttgtgtctctcaaacactctcagataaaagtggtacaatatgtatatagagaaaagggagttcatgaaacattatcc 33687829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 11247302 - 11247374
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  11247302 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 11247374  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 13988357 - 13988429
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  13988357 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13988429  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 35906103 - 35906163
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacatta 102  Q
    ||||| |||||||| |||||||||  || ||||| ||||||| | ||||||||||||||||    
T  35906103 acactctcacatgagagtggtacatagtatgtatggagaaaagggtgttcatgaaacatta 35906163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 48489540 - 48489630
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatc 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  48489540 caagaaactcatcttttgtgtctctcaaacactatcacatggaagtggtacaatgtatgtatagagaaaatggtgttcatgaaacattatc 48489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 47571653 - 47571563
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  47571653 aagaaactcatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 47571563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 29731279 - 29731369
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatc 104  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||    
T  29731279 caagaaattcatcttttgtgtctctcaaacactctcacatggaagtgatacaatgtgtgtatagagaaaagggtgttcatgaaacattatc 29731369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 15066110 - 15066020
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||| |||  ||||||||| ||||| |||||||| ||||||||| ||| ||||| || ||||   |||||||||||||||||||    
T  15066110 aagaaactcatatttattgtctctcacacactctcacatgagagtggtacattgtatgtatggaaaaaagagtgttcatgaaacattatcc 15066020  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 19989341 - 19989418
Alignment:
Q  27 ttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||| |||||||   |||  ||||||||||||||    
T  19989341 ttttgtgtctctcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcc 19989418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 44797539 - 44797467
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||| ||||   ||| |||||||||||||||    
T  44797539 tgtctctcacacactctcacatgaa-gtggtacaatgtgtgtatagaaaaaagtgtgtacatgaaacattatcc 44797467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 526972 - 526909
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||| ||||||| ||||||||||  |||||||| ||||||| | |||||||||||||||||||    
T  526972 acactctcacatggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 526909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 13276537 - 13276474
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||| |||||||  |||||||||  |||||||| ||||||| | |||||||||||||||||||    
T  13276537 acactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 13276474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 1995062 - 1995134
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  1995062 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 1995134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 39858471 - 39858519
Alignment:
Q  57 agtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||  |||||||| ||||||| | |||||||||||||||||||    
T  39858471 agtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatcc 39858519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 37536406 - 37536317
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattat 103  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37536406 caagaaactcatcttttgtatctctcaaacactctcacatgaaagtggtacaatgtgtgtatagagaaaatggtgttcatgaaacattat 37536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 28713769 - 28713859
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||    
T  28713769 aagaaactcatcttttgtgtctctcaaacactctcacatgaaagtggtacaatatgtgtatagagaaaagggtgttcatgaaacattatcc 28713859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 38349549 - 38349459
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  38349549 aagaaactcatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 38349459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 41279912 - 41280005
Alignment:
Q  146 cagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaaatgttga 239  Q
    ||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  41279912 cagacaaaatgaggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttga 41280005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 41286968 - 41287061
Alignment:
Q  146 cagacaaaatgagctatctaagggatgcaataagtatgacaatactacaatcatataattacaaatgaatattgttaattatataaaatgttga 239  Q
    ||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  41286968 cagacaaaatgaggtgtctaagggatacaataattatgacaatattacaatcatataattacaaatgaatactgttaattatattaaatgttga 41287061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 13768462 - 13768552
Alignment:
Q  16 agaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatg-aaacattatcc 105  Q
    ||||| ||||||||  ||||||||||||||| ||| ||| ||||| |||||| |||||||||| |||| | |||||||| |||||||||||    
T  13768462 agaaattcatctttcatgtctctcaaacactctcatatggaagtgatacaatatgtgtatagaaaaaagggtgttcatgaaaacattatcc 13768552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 31741152 - 31741215
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||| |||||||  |||||||||  ||||||||||| |||| |||||||||||||||||||||    
T  31741152 acactctcacatgggagtggtacatagtgtgtatagaaaaaaggatgttcatgaaacattatcc 31741215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 43359064 - 43359154
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||| |||| |||| | ||||||| ||||| ||||||||  ||| |||| ||||||||| ||||||||| |||  ||||||||||||||    
T  43359064 aagaaattcattttttttatctctcacacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcc 43359154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 30922782 - 30922710
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||  |||| |||||||||||||||    
T  30922782 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtatgtacatgaaacattatcc 30922710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 46576314 - 46576242
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  46576314 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 46576242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 11904944 - 11905036
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatccg 106  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  11904944 caagaaactcatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatgaaacattatccg 11905036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 35200647 - 35200738
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||    
T  35200647 caagaaactcatcttttgtgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagagaaaagggtgttcatcaaacattatcc 35200738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 10592067 - 10592148
Alignment:
Q  14 caagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatga 95  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||| | |||||||||    
T  10592067 caagaaactcatcttttgtgtctctcaaacactctcatatgaaagtggtacaatgtgtgtataaaaaaaagggtgttcatga 10592148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 41075682 - 41075596
Alignment:
Q  18 aaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||  |||||||||| ||| ||||| |||||||| ||||||||||||||||||| ||||||||| |||  | ||||||||||||    
T  41075682 aaactcacattttgtgtctttcacacactctcacatgatagtggtacaatgtgtgtat-gagaaaatggtgtctacgaaacattatcc 41075596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 28898104 - 28898167
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||| ||| |||| |||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  28898104 acactctcatatgagagtggtacatagtgtgtatggagaaaatggtgttcatgaaacattatcc 28898167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 31774822 - 31774908
Alignment:
Q  18 aaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||  |||||||||| ||| ||||| |||||||| ||||||||||||||||||| ||||||||  |||  | ||||||||||||    
T  31774822 aaactcacattttgtgtctttcacacactctcacatgatagtggtacaatgtgtgtat-gagaaaatagtgtctacgaaacattatcc 31774908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 14342259 - 14342187
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  14342259 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 14342187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 36674609 - 36674519
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  36674609 aagaaactcatcttttatgtctctcaaacactctcatatggaagtggtacaatgtgtgtatagagaaaaggatgttcatgaaacataatcc 36674519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 46135660 - 46135707
Alignment:
Q  58 gtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  46135660 gtggtacaatgtgtgtatggagaaaatgatgttcatgaaacattatcc 46135707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 23004874 - 23004937
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||| ||||||| ||||||| ||  |||||||| ||||||| | |||||||||||||||||||    
T  23004874 acactctcacatggaagtggtgcatagtgtgtatggagaaaagggtgttcatgaaacattatcc 23004937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 38247908 - 38247979
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| |||||| | ||||||||||||||||||| || ||| || ||| |||||||||||||||    
T  38247908 tgtctctcacacactctcacat-agagtggtacaatgtgtgtatggaaaaagtg-tgtacatgaaacattatcc 38247979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 48034880 - 48034808
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||| || ||||   ||| ||| |||||||||||    
T  48034880 tgtctctcacacactctcacatgaa-gtggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 50989313 - 50989385
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||||| |||||| |||||||||||| | ||||   ||| |||||||||||||||    
T  50989313 tgtctctcacacactctcacatgaa-gtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 50989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 51092445 - 51092517
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||||| |||||| |||||||||||| | ||||   ||| |||||||||||||||    
T  51092445 tgtctctcacacactctcacatgaa-gtggtataatgtgtgtataaaaaaaaatgtgtacatgaaacattatcc 51092517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 40216501 - 40216591
Alignment:
Q  15 aagaaactcatcttttgtgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  40216501 aagaaactcatcttttatgtctctcaaacactctcacatggaagtggtacaatgtgtgtatagaggaaagggtgttcatgaaacattatcc 40216591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 4434664 - 4434592
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||| | ||||||||  |||||||||||||||||| || |||||  |||||||||||||||||||    
T  4434664 tgtctctcacacattctcacatgag-gtggtacaatgtgtgtatggaaaaaatagtgttcatgaaacattatcc 4434592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 13697037 - 13696965
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  13697037 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 13696965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 17823689 - 17823761
Alignment:
Q  32 tgtctctcaaacactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacattatcc 105  Q
    ||||||||| ||||| ||||||| | |||||||||||||||||| || ||||   ||| |||||||||||||||    
T  17823689 tgtctctcacacactctcacatgga-gtggtacaatgtgtgtatggaaaaaagtgtgtacatgaaacattatcc 17823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 24475774 - 24475714
Alignment:
Q  42 acactatcacatgaaagtggtacaatgtgtgtatagagaaaatgatgttcatgaaacatta 102  Q
    ||||| |||| || ||||||||||  |||||||| ||||||| | ||||||||||||||||    
T  24475774 acactctcacgtggaagtggtacatagtgtgtatggagaaaagggtgttcatgaaacatta 24475714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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