View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_high_22 (Length: 250)
Name: NF15183_high_22
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 38608848 - 38609080
Alignment:
| Q |
11 |
tcatcacatgcaacctaactagaacatacagtgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
110 |
Q |
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| T |
38608848 |
tcatcacatgcaacctaactagaacatacattgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
38608947 |
T |
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| Q |
111 |
ggnnnnnnngaacaacgtagcatatccatagagagc--------taatcaacaagacccttatttgccaatgcataccaaaatgtcaccaaaacacgagt |
202 |
Q |
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| T |
38608948 |
ggaaaaaaagaacaacgtagcatatccatacagagctaatcaaataatcaacaaaacccttatttgccaatacataccaaaatgtcaccaaagcacgagt |
38609047 |
T |
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| Q |
203 |
atcatttgcaa-aagtataacaaaccatattgt |
234 |
Q |
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|||||| |||| ||||| |||||||||||||| |
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| T |
38609048 |
atcattggcaatcagtatcacaaaccatattgt |
38609080 |
T |
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