View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_high_9 (Length: 416)
Name: NF15183_high_9
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 22595511 - 22595262
Alignment:
| Q |
1 |
gagtgaaaaagtgtaggtatagtaa----atgtgagttagaactcttaaaccggatggatgaaaaattagacgttgagtataaagtgagatgacttatac |
96 |
Q |
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| T |
22595511 |
gagtgaaaaagtgtaggtatagtaagtaaatgtgagttagaactcttaaaccggatggatgaaaaattagactttgagtataaagtgagatgacttatac |
22595412 |
T |
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| Q |
97 |
accaaatatatgtttggtttgaattattttcatcgactccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgttgtttctgcgttaa |
196 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22595411 |
accaaatatatgttcggtttgaattattttcatcgattccacatgactaaggtcttttgatgtcaaaatgcgaagtgattgattgttgtttctgagttaa |
22595312 |
T |
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| Q |
197 |
tatagttatttgccgtgattttacaaatgtgtatccaagcacatacgtct |
246 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
22595311 |
tatagttatttgccgtgattttgcaaacgtgtatccaagcacatacgtct |
22595262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 244 - 400
Target Start/End: Complemental strand, 22595088 - 22594935
Alignment:
| Q |
244 |
tctcgttgcaaaacattatgaaagaaatctttatggctgattaacttataaaagtgcttttaaaaatataaatttcactttcatatatttagttgctttt |
343 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22595088 |
tctcgttgcaaaacattatgaaagaaatcttcatggctgattgacttataaaagtgcttttaaaaatataaa-ttcactttcatatatttagttgctttt |
22594990 |
T |
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| Q |
344 |
agtannnnnnnnncttcttgttttttgaaattgattttaactttaaggattatattt |
400 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22594989 |
agtatttttttt--ttcttgttttttgaaattgattttaactttaaggattatattt |
22594935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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