View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_1 (Length: 648)
Name: NF15183_low_1
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Original strand, 31175488 - 31176101
Alignment:
| Q |
18 |
taatgtcattgccccttcaatatttagagtgatcataataccattgtctctttgatatttgaagtgaccatagtaccatcgtcccttcgacttcagagtg |
117 |
Q |
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| T |
31175488 |
taatgtcattgccccttcaatatttagagtggtcataataccattgtctctttgatatttgaagtgaccatagtaccatcgtcccttcgacttcagagtg |
31175587 |
T |
|
| Q |
118 |
gtttttgtactatagtcccttcagtttcagagtggtattaacactatatttggtatttgttgggtggcttatgcaatatttgagggtgtaaattctagaa |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175588 |
gtttttgtactatagtgccttcagtttcagagtggtatcaacactatatttggtatttgttgggtggcttatgcaatatttgagggtgtaaattctagaa |
31175687 |
T |
|
| Q |
218 |
tggatcttaagaatgaatttaattattcgtcgattaaaaataataagtttaatatcaatgttcttaacagaagtagtctcactttactgccagtggcact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175688 |
tggatcttaagaatgaatttaattattcgtcgattaaaaataataagtttaatatcaatgttcttaacagaagtagtctcactttactgccagtggcact |
31175787 |
T |
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| Q |
318 |
tcagttgtctgtatgagtctctcatttatagtgtcggtttagttggtatttgtgtttcaatatcgtttccaatccttagccttatgtacctgtgtcactc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31175788 |
tcagttgtctgtatgagtctctcatttatagtgtcggtttagttggtatttgtgtttcaatatcgtttccaatccttagccttatgtacctgtgtcactc |
31175887 |
T |
|
| Q |
418 |
attcagttatgagtattcgtttgtaactatggtgtggtttccctttttccttggaggtaacttctatcattaaatacgtgtttatgtgttgtatattttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||| |
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| T |
31175888 |
attcagttatgagtattcgtttgtaactatggtgtggtttccctttttccttggaggtaacttctatcattaaatatgtgtt--tgcattgtata-tttt |
31175984 |
T |
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| Q |
518 |
tatatgcctaacttctatgcatattggcttacttgattgtctgcatgttcagttatttatttgttcgtctgttctactcaacttattgtttagtggaagt |
617 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
31175985 |
tatatgcctaacttctatgcatattggcttacttaattgtctgcatgttcagttatttatttgttcgtctgttctactcaacttattgtttagtggatgt |
31176084 |
T |
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| Q |
618 |
tgacatctatctgtgtt |
634 |
Q |
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|||||||||| |||||| |
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| T |
31176085 |
tgacatctatttgtgtt |
31176101 |
T |
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