View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15183_low_12 (Length: 369)
Name: NF15183_low_12
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 355
Target Start/End: Complemental strand, 40119389 - 40119039
Alignment:
| Q |
10 |
aatatacctgcaaaatggagagggcaccaatgtatccacgcacatcgctatttgagtaaccccatcccttgagttctgctataccaacgaatttctcttg |
109 |
Q |
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| T |
40119389 |
aatatacctgcaaaatggagagggcaccaatgtatccacgcacatcactatttgagtaaccccatcccttgagttctgctataccaacgaatttctcttg |
40119290 |
T |
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| Q |
110 |
tccagctggcatgctgatacatcaaatgatatgatatatgttactaattaatattctaaccgatttatcagttttattgtactggaataaggaattaatt |
209 |
Q |
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| T |
40119289 |
tccagctggcatgctgatacatcaaatgatatgatatatgttactaattaatattctaaccgatttaacagttttattgtactggaataaggaattaatt |
40119190 |
T |
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| Q |
210 |
accttgcacatagtttatcaaaaatataaactacaaaacctg--tatcacaaacaaaattgttaat---tagtggaaacaaataatcatatctagtctag |
304 |
Q |
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| T |
40119189 |
accttgcacatagtttatcaagaatataaactacaaaacctgtatatcacaaacaaaattgttaatgagtagtggaaacaaataatcatatctagtctag |
40119090 |
T |
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| Q |
305 |
cttatcacaaaccatacatacgtttgaattcatctagaccatctttctttt |
355 |
Q |
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| T |
40119089 |
cttatcacaaaccatacatacgtttgaattcatctagaccatctttctttt |
40119039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 40124046 - 40123790
Alignment:
| Q |
11 |
atatacctgcaaaatggagagggcaccaatgtatccacgcacatcgctatttgagtaaccccatcccttgagttctgctataccaacgaatttctcttgt |
110 |
Q |
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| T |
40124046 |
atatacctgcaaaatggagagagcaccaatgtatccacgcaaatcactatttgagtaaccccatcccttgagttctgctataccaacaaatttttcttcc |
40123947 |
T |
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| Q |
111 |
ccagctggcatgctgatacatcaaatgatatgatatatgttactaattaatattctaaccgatt------tatcagttttattgtactggaataaggaat |
204 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
40123946 |
ccagggggcatgctgatacatcaaatga-------tatgttactaatcaatattctaaccgatttcacagttttagttttattgtactggaataaggaat |
40123854 |
T |
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| Q |
205 |
taattaccttgcacatagtttatcaaaaatataaactacaaaacctgtatcacaaacaaaattg |
268 |
Q |
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| T |
40123853 |
taattaccttgcacatagtttatcaagaatataaactgcaaaccctgtatcacaaagaaaattg |
40123790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 40123447 - 40123412
Alignment:
| Q |
320 |
acatacgtttgaattcatctagaccatctttctttt |
355 |
Q |
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| T |
40123447 |
acatacgtttgaattcatctagaccatctttctttt |
40123412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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