View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_low_13 (Length: 353)

Name: NF15183_low_13
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_low_13
NF15183_low_13
[»] chr7 (13 HSPs)
chr7 (13-163)||(13886367-13886517)
chr7 (13-167)||(13882865-13883017)
chr7 (3-166)||(4300312-4300475)
chr7 (9-167)||(1220609-1220767)
chr7 (1-167)||(859324-859490)
chr7 (1-167)||(1217328-1217494)
chr7 (3-166)||(4303213-4303368)
chr7 (239-335)||(48870134-48870230)
chr7 (128-166)||(1883296-1883334)
chr7 (127-159)||(4888947-4888979)
chr7 (135-167)||(29175578-29175610)
chr7 (128-166)||(1874345-1874382)
chr7 (128-164)||(30217616-30217652)
[»] chr3 (12 HSPs)
chr3 (1-167)||(43306840-43307006)
chr3 (1-167)||(53012783-53012947)
chr3 (1-164)||(3069043-3069206)
chr3 (1-167)||(43304128-43304292)
chr3 (1-167)||(3063905-3064073)
chr3 (10-130)||(45168470-45168590)
chr3 (1-60)||(41218666-41218725)
chr3 (3-61)||(25857652-25857710)
chr3 (3-65)||(39913399-39913461)
chr3 (128-167)||(365846-365885)
chr3 (128-161)||(2472952-2472985)
chr3 (87-123)||(19795067-19795103)
[»] chr2 (13 HSPs)
chr2 (1-167)||(15129173-15129339)
chr2 (13-167)||(22011187-22011341)
chr2 (3-166)||(27952489-27952658)
chr2 (3-166)||(27956325-27956494)
chr2 (3-167)||(33655381-33655545)
chr2 (13-166)||(31636091-31636246)
chr2 (1-166)||(2155724-2155888)
chr2 (10-142)||(31633884-31634016)
chr2 (1-130)||(2165715-2165844)
chr2 (9-159)||(22264199-22264349)
chr2 (50-167)||(35682009-35682125)
chr2 (9-110)||(8781323-8781427)
chr2 (127-167)||(1517985-1518026)
[»] chr1 (11 HSPs)
chr1 (3-167)||(50857615-50857778)
chr1 (1-167)||(13444156-13444319)
chr1 (1-163)||(13441767-13441919)
chr1 (30-130)||(8931016-8931116)
chr1 (239-335)||(2904956-2905052)
chr1 (46-110)||(42071534-42071598)
chr1 (239-335)||(2888859-2888955)
chr1 (239-335)||(2893447-2893543)
chr1 (128-164)||(31915346-31915382)
chr1 (128-166)||(43681254-43681292)
chr1 (128-163)||(31913198-31913233)
[»] chr8 (12 HSPs)
chr8 (3-167)||(42891835-42892005)
chr8 (3-167)||(22512218-22512382)
chr8 (13-147)||(6845112-6845246)
chr8 (1-154)||(23573351-23573504)
chr8 (1-154)||(23570355-23570505)
chr8 (7-130)||(22922025-22922148)
chr8 (3-167)||(37189622-37189785)
chr8 (38-124)||(18468514-18468600)
chr8 (3-147)||(42890182-42890316)
chr8 (8-76)||(22926822-22926890)
chr8 (9-160)||(18180858-18181014)
chr8 (127-167)||(24730826-24730866)
[»] chr4 (7 HSPs)
chr4 (1-167)||(22691062-22691232)
chr4 (1-167)||(24667436-24667608)
chr4 (10-154)||(6659507-6659651)
chr4 (1-160)||(22716424-22716579)
chr4 (1-160)||(22988638-22988793)
chr4 (71-159)||(19935271-19935358)
chr4 (13-159)||(13085271-13085417)
[»] chr5 (6 HSPs)
chr5 (3-154)||(40778957-40779108)
chr5 (3-164)||(21849142-21849302)
chr5 (71-164)||(21845128-21845221)
chr5 (71-164)||(21857123-21857216)
chr5 (61-166)||(19501178-19501282)
chr5 (4-111)||(19677301-19677409)
[»] chr6 (15 HSPs)
chr6 (1-130)||(3535827-3535956)
chr6 (1-130)||(3542038-3542167)
chr6 (3-154)||(30051972-30052121)
chr6 (3-154)||(30049685-30049834)
chr6 (14-166)||(29340988-29341125)
chr6 (46-166)||(11194422-11194541)
chr6 (86-152)||(18203253-18203319)
chr6 (50-167)||(18726888-18727003)
chr6 (46-163)||(11190259-11190375)
chr6 (9-64)||(3565596-3565651)
chr6 (120-167)||(27822370-27822417)
chr6 (3-61)||(2939862-2939919)
chr6 (4-115)||(19232133-19232243)
chr6 (128-164)||(8050125-8050161)
chr6 (46-110)||(26570975-26571039)
[»] scaffold0110 (3 HSPs)
scaffold0110 (3-130)||(46875-47002)
scaffold0110 (10-96)||(45440-45526)
scaffold0110 (86-130)||(45870-45914)


Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 13886367 - 13886517
Alignment:
Q  13 ctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaat 112  Q
    |||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13886367 ctcttaggatacataagttcagcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaat 13886466  T
Q  113 tactaagatttgactaaataataaatactactaaattactaataaaaccct 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13886467 tactaagatttgactaaataataaatactactaaattactaataaaaccct 13886517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 13882865 - 13883017
Alignment:
Q  13 ctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaat 112  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  13882865 ctcttaggatacataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataat--agagttctagaaaat 13882962  T
Q  113 tactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882963 tactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 13883017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 4300475 - 4300312
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||| ||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300475 aaaagtgtgtctcttaggctacataagttctccttatataccgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 4300376  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    | ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  4300375 tttagaaaattactatgttttggctaaataataaatactactaaattactaataaaaccctcct 4300312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 1220609 - 1220767
Alignment:
Q  9 gtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctaga 108  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |||||||||    
T  1220609 gtgcctcttaggctacataagttctgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaagttctaga 1220708  T
Q  109 aaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  1220709 aaattactaagatttggctaaataataaatactactaaattactaataaaatcctcctg 1220767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 859324 - 859490
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||| | |||||||||||||||| || ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |    
T  859324 ataaaagtgtgcattttaggctacataagttatgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaa 859423  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  859424 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaatcctcctg 859490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1217328 - 1217494
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||| | |||||||||||||||| || ||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||| |    
T  1217328 ataaaagtgtgcattttaggctacataagttatgtttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaacgaaataataatagaaa 1217427  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1217428 gttctagaaaattactaagatttggctaaataataaatactactgaattactaataaaaccctcctg 1217494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 4303368 - 4303213
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  4303368 aaaagtgtgcctcttaggctacataagtcctgtttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacataataataa-agagagt 4303270  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    ||||||||||||        || |||||||||||||||||||||||||||||||||||||||||    
T  4303269 tctagaaaatta-------atggctaaataataaatactactaaattactaataaaaccctcct 4303213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 239 - 335
Target Start/End: Original strand, 48870134 - 48870230
Alignment:
Q  239 ttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattgcttctt 335  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48870134 ttttctagttggcttttcattttgatcagaatttcttgtcacagctgaatctattacatttccactatcaaaattaggcacatcatgattgcttctt 48870230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 1883334 - 1883296
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctcct 166  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  1883334 aaataataaatactactaagttactaataaaaccctcct 1883296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 4888947 - 4888979
Alignment:
Q  127 taaataataaatactactaaattactaataaaa 159  Q
    |||||||||||||||||||||||||||||||||    
T  4888947 taaataataaatactactaaattactaataaaa 4888979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 29175610 - 29175578
Alignment:
Q  135 aaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||||||||||||    
T  29175610 aaatactactaaattactaataaaaccctcctg 29175578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 1874382 - 1874345
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctcct 166  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  1874382 aaataataaatactactaaattactaa-aaaaccctcct 1874345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 30217652 - 30217616
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctc 164  Q
    ||||||||||||||||||||||| | |||||||||||    
T  30217652 aaataataaatactactaaattagttataaaaccctc 30217616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 43306840 - 43307006
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||      
T  43306840 ataaaagtgtgcctcttaggctacataagttctgcttatatagtgaaagaaataacaaaaccgtgggccaaaataaaataaaacgaaataataatagaat 43306939  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  43306940 gttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcctg 43307006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 53012947 - 53012783
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||  |||    
T  53012947 ataaaagtgtgcctcttaggctacattagttatgcttatatagtgaaagaaataacaaacccgtgggctaaaataaaataaaacataataataat--aga 53012850  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53012849 gttctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctg 53012783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 3069043 - 3069206
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||    
T  3069043 ataaaagtgtgcatcttaggctacataagttatgcttatatagtgaaagaaataacaaactcgtgtgccaaaataaaataaaacgtaataataatagtga 3069142  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctc 164  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3069143 gttctagagaattacaaagatttggctaaataataaatactactaaattactaataaaaccctc 3069206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 43304128 - 43304292
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |    
T  43304128 ataaaagtgt--ctcttaggctacataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgaaatactaatagaaa 43304225  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    ||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  43304226 gttatagaaaattactaagatttggctaaataataaatgctactaaattactaataaaaccctcctg 43304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3063905 - 3064073
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgta--ataataataga 98  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||      
T  3063905 ataaaagtgtacctcttaggctacataagttatgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaatataataataac 3064004  T
Q  99 gagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  3064005 gagttctagagaattactaagatttggctaaataataaatactactaaattactaacaaaaccctcctg 3064073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 130
Target Start/End: Original strand, 45168470 - 45168590
Alignment:
Q  10 tgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaa 109  Q
    |||||||||| || ||||| ||||||||||||| ||||||||||||||||| ||||| |  ||||||||||||||| ||||||||||||  ||| |||||    
T  45168470 tgcctcttagtctgcataacttctgcttatatagtgaaagaaataacaaactcgtggactgaaataaaataaaacgaaataataatagaaggttttagaa 45168569  T
Q  110 aattactaagatttgactaaa 130  Q
    ||||||||| ||||| |||||    
T  45168570 aattactaaaatttgcctaaa 45168590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41218725 - 41218666
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaac 60  Q
    ||||||||||| |||||||||| ||||||||||||||| ||| | |||||||||||||||    
T  41218725 ataaaagtgtgtctcttaggctccataagttctgcttaaatactaaaagaaataacaaac 41218666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 25857710 - 25857652
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacc 61  Q
    ||||||||| ||||||||||||||||||| |||||| ||| | ||||||||||||||||    
T  25857710 aaaagtgtgtctcttaggctacataagttatgcttaaatactaaaagaaataacaaacc 25857652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 39913399 - 39913461
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtg 65  Q
    |||| ||||||||||||||| ||||||||||| ||| ||| | ||||||||||||||||||||    
T  39913399 aaaaatgtgcctcttaggctgcataagttctgtttaaatactaaaagaaataacaaacccgtg 39913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 365846 - 365885
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  365846 aaataataaatactactaaattactaataaaatcctcctg 365885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 161
Target Start/End: Original strand, 2472952 - 2472985
Alignment:
Q  128 aaataataaatactactaaattactaataaaacc 161  Q
    ||||||||||||||||||||||||||||||||||    
T  2472952 aaataataaatactactaaattactaataaaacc 2472985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 19795103 - 19795067
Alignment:
Q  87 aataataatagagagttctagaaaattactaagattt 123  Q
    |||||||||||| ||||||||||||||||||||||||    
T  19795103 aataataatagaaagttctagaaaattactaagattt 19795067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 15129339 - 15129173
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||  |    
T  15129339 ataaaagtgtgcctcttaggctacataagttctgcttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacgaaataataataggaa 15129240  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||    
T  15129239 gttctagaaaattactaagatttggttaaataataaatactactaaattattaataaaaccctcctg 15129173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 22011341 - 22011187
Alignment:
Q  13 ctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaat 112  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  22011341 ctcttaggctacataagttttgcttatatagtgaaagaaataacagacccgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaaat 22011242  T
Q  113 tactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||| |||||||||||||||||||||||||   ||||||||||||||    
T  22011241 tactaagatttggctaaataataaatactactaaattaaagataaaaccctcctg 22011187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 27952489 - 27952658
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaag------aaataacaaacccgtgggccaaaataaaataaaacgtaataataata 96  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||      |||||||||||||||||||||||||||||||||||| ||||||||||    
T  27952489 aaaagtgtgcctcttaggctacataagttctgcttatatagtgatagtgatagaaataacaaacccgtgggccaaaataaaataaaacgaaataataata 27952588  T
Q  97 gagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    || |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  27952589 gaaagttctagaaaattactaagatttggataaataataaatactactaaattattaataaaaccctcct 27952658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 27956325 - 27956494
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaag------aaataacaaacccgtgggccaaaataaaataaaacgtaataataata 96  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||      ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27956325 aaaagtgtgcctcttaggctacataagttctgcttatatagtgatagtgatagaaataacaaacccgtgggctaaaataaaataaaacgaaataataata 27956424  T
Q  97 gagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    || |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  27956425 gaaagttctagaaaattactaagatttggataaataataaatactactaaattactaataaaaccctcct 27956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 33655545 - 33655381
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||||||||||||||| ||  ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||||| |||    
T  33655545 aaaagtgtgcctcttaggctaaattggttctccttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacaaaataataatagaaagt 33655446  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  33655445 tctagaaaattactaagatttggctaaataatagatactactaaattaccaataaaaccctcctg 33655381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 31636246 - 31636091
Alignment:
Q  13 ctcttaggctacataagttctgcttatataa--tgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaa 110  Q
    ||||| ||||||||||||||| ||||||||   |||||||||||||||||  ||||||||||||||||||||||| |||||||||||| |||||||||||    
T  31636246 ctcttcggctacataagttctacttatatatagtgaaagaaataacaaacatgtgggccaaaataaaataaaacgaaataataatagaaagttctagaaa 31636147  T
Q  111 attactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31636146 attactaagatttggctaaataataaatactactaaattactaataaaaccctcct 31636091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2155888 - 2155724
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||| |    
T  2155888 ataaaagtgtgtctcttaggctgcataagttctgcttatatagtgaaagaaataacaaacacgtgggccaaaataaaacaaaacaaaataataatagaaa 2155789  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    |||||||||||| ||||||||||||||||| |  ||||||||  ||||||||||  ||||||||||    
T  2155788 gttctagaaaatcactaagatttgactaaa-ataaaatactataaaattactaaggaaaccctcct 2155724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 31634016 - 31633884
Alignment:
Q  10 tgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaa 109  Q
    |||||||| |||| |||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||| | |||||||||||| ||||||||||    
T  31634016 tgcctcttcggctgcataagttctacttatatagtgaaagaaataacaaactcgtgggccgaaataaaataaaatgaaataataatagaaagttctagaa 31633917  T
Q  110 aattactaagatttgactaaataataaatacta 142  Q
    ||||||||||||||| |||||||||||||||||    
T  31633916 aattactaagatttggctaaataataaatacta 31633884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 2165844 - 2165715
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||| |||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||||||| | |    
T  2165844 ataaaaatgtgtctcttaggctgcataagttctccttatatagtgaaagaaataacaaactcgtgggccaaaataaaacaaaacaaaataataatacaaa 2165745  T
Q  101 gttctagaaaattactaagatttgactaaa 130  Q
    |||||| ||||| |||||||||||||||||    
T  2165744 gttctaaaaaatcactaagatttgactaaa 2165715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 22264349 - 22264199
Alignment:
Q  9 gtgcctcttaggctacataa-gttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctag 107  Q
    |||||||||||||| ||||| ||| |||||| |||  ||||||||||||||||||||| ||| |||||||| |||||  |||||||||||| ||||||||    
T  22264349 gtgcctcttaggctgcataatgttatgcttaaatagcgaaagaaataacaaacccgtgagccgaaataaaacaaaacaaaataataatagaaagttctag 22264250  T
Q  108 aaaattactaagatttgactaaataataaatactactaaattactaataaaa 159  Q
    ||||||||||||||||| ||||| |  |||||||||||||||||||| ||||    
T  22264249 aaaattactaagatttggctaaa-ataaaatactactaaattactaagaaaa 22264199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 35682125 - 35682009
Alignment:
Q  50 aaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaatt 149  Q
    |||||||||||| ||||| | |||||||| |||||| ||||| |||||| ||||||||||||||||||||||||| ||||| |  ||||||||  |||||    
T  35682125 aaataacaaacctgtgggtccaaataaaacaaaacgaaataacaatagaaagttctagaaaattactaagatttggctaaa-ataaaatactataaaatt 35682027  T
Q  150 actaataaaaccctcctg 167  Q
    ||||| ||||||||||||    
T  35682026 actaagaaaaccctcctg 35682009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8781427 - 8781323
Alignment:
Q  9 gtgcctcttaggctacataa-gttctgcttatata--atgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttct 105  Q
    |||||||||||||| ||||| |||||| ||| |||  |  ||| ||| |||||||  ||||||| |||||||| |||||| |||||||||||| ||||||    
T  8781427 gtgcctcttaggctgcataacgttctgtttaaatagcaaaaaaaaaaaaacaaacatgtgggccgaaataaaacaaaacgaaataataatagaaagttct 8781328  T
Q  106 agaaa 110  Q
    |||||    
T  8781327 agaaa 8781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 1518026 - 1517985
Alignment:
Q  127 taaataataaa-tactactaaattactaataaaaccctcctg 167  Q
    ||||||||||| ||||||||||||||||| ||||||||||||    
T  1518026 taaataataaaatactactaaattactaagaaaaccctcctg 1517985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 50857615 - 50857778
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||| |||    
T  50857615 aaaagtgtgcctcttaggctgcataagttctgcttatatagtgaaagtaataacaaacccgtgggccaaa-taaaacaaaacgaaataataatagaaagt 50857713  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50857714 tctagaaaattactaagatttggctaaataataaatactactaaattactaataaaaccctcctg 50857778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 13444156 - 13444319
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||   |||||||||||  ||||||||||||||||||||| |||||||||||| |    
T  13444156 ataaaaatgtgcctcttaggctacataagttctgcttatatagtgaaa---ataacaaacccacgggccaaaataaaataaaacgaaataataatagaaa 13444252  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
     |||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  13444253 attcttgaaaattactaaaatttggctaaataataaatactactaaattactaataaaatcctcctg 13444319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 13441767 - 13441919
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||  ||| ||||||||||||||||| ||||||||          
T  13441767 ataaaagtgtgcctcttaggctatataagttcagcttatatagtgaaagaaataacaaaccctcgggtcaaaataaaataaaacgaaataataa------ 13441860  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccct 163  Q
        ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||    
T  13441861 ----tagaaaattactatgatttggctaaataataaatactactaaattactaacaaaaccct 13441919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 8931116 - 8931016
Alignment:
Q  30 ttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaa 129  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||  |||||||||||| ||||||||||||| ||||||||||||||||    
T  8931116 ttctgcttatatagtgaaagaaataacaaactcgtgggccaaaataaaacaaaacaaaataataatagaaagttctagaaaatcactaagatttgactaa 8931017  T
Q  130 a 130  Q
    |    
T  8931016 a 8931016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 2905052 - 2904956
Alignment:
Q  239 ttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattgcttctt 335  Q
    |||||||| ||||||||||| ||||||  |||||| ||||  ||||||||| ||||||||||||| |||| |||||||| ||||| |||||||||||    
T  2905052 ttttctagatggcttttcattttgatcgaaatttcctgtccgagctgaatcgattccatttccacaatcagaattaggcgcatcacgattgcttctt 2904956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 42071534 - 42071598
Alignment:
Q  46 aaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaa 110  Q
    ||||||||||||||||  |||||| ||||||||||||||| |||||||||||| |||||||||||    
T  42071534 aaagaaataacaaacctttgggccgaaataaaataaaacgaaataataatagaaagttctagaaa 42071598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 2888955 - 2888859
Alignment:
Q  239 ttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattgcttctt 335  Q
    |||||||| ||||||||||  ||||||||||||||  ||| |||| |||||| | ||||||||||||||| |||||||  | || ||||||||||||    
T  2888955 ttttctagatggcttttcaatttgatcagaatttccagtcccagccgaatctttcccatttccactatcagaattaggtgcgtcgtgattgcttctt 2888859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 2893543 - 2893447
Alignment:
Q  239 ttttctagttggcttttcatcttgatcagaatttcttgtcacagctgaatctattccatttccactatcaaaattaggcacatcatgattgcttctt 335  Q
    |||||||| || | |||||| || ||||||||||| |||| | || |||||| | ||||||||||||||| |||| ||| | |||||||||||||||    
T  2893543 ttttctagatgccctttcatttttatcagaatttcctgtccccgccgaatctttcccatttccactatcagaattgggcgcgtcatgattgcttctt 2893447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 31915382 - 31915346
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctc 164  Q
    |||||||||||||||||||||||||||||||||||||    
T  31915382 aaataataaatactactaaattactaataaaaccctc 31915346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 43681292 - 43681254
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctcct 166  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  43681292 aaataataaatactactaaattactaataaaaccatcct 43681254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 31913233 - 31913198
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccct 163  Q
    ||||| ||||||||||||||||||||||||||||||    
T  31913233 aaatactaaatactactaaattactaataaaaccct 31913198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 42891835 - 42892005
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaag------aaataacaaacccgtgggccaaaataaaataaaacgtaataataata 96  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||      ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  42891835 aaaagtgtgcctcttaggctacataagttctgcttatatagtgatagtgatagaaataacaaacccgtgggctaaaataaaataaaacgaaataataata 42891934  T
Q  97 gagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    || |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  42891935 gaaagttctagaaaattactaagatttggttaaataataaatactactaaattactaataaaaccctcctg 42892005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 22512218 - 22512382
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||| |||||||| ||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||| | |||    
T  22512218 aaaagtgtgactcttaggttacataagtgctgcttatatagtgaaagaaataataaacctgtgggccgaaataaaatgaaacgaaataataatataaagt 22512317  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||    
T  22512318 tctagaaaattactaagatttagctaaataataaatactactaaattactaataaaactctcctg 22512382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 6845246 - 6845112
Alignment:
Q  13 ctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaat 112  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  6845246 ctcttaggatacataagttctgcttatatagtgaaagaaataacaaactcgtaggccaaaataaaatcaaacgtaataataatagagagttttagaaaat 6845147  T
Q  113 tactaagatttgactaaataataaatactactaaa 147  Q
    |||||||||||||||||||||||||||||| ||||    
T  6845146 tactaagatttgactaaataataaatactaataaa 6845112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23573504 - 23573351
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||| ||| ||| ||||||||||||||| ||||| |||||| |    
T  23573504 ataaaagtgtgcctcttaggctacataagttccgcttatatagcgaaagaaataacaaacctgtgagccgaaataaaataaaacgaaataaaaatagaaa 23573405  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaa 154  Q
    ||||||||||||||||||||||||  ||||||||||||||||  ||||||||||    
T  23573404 gttctagaaaattactaagatttggttaaataataaatactataaaattactaa 23573351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23570505 - 23570355
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||   |||||||| ||||||||| |||||||||||||||||  ||||| | ||||||||||||||| ||||| |||||| |    
T  23570505 ataaaagtgtgcctcttaggc---ataagttccgcttatatagtgaaagaaataacaaacatgtgggtcgaaataaaataaaacgaaataaaaatagaaa 23570409  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaa 154  Q
    ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||    
T  23570408 gttctagaaaattactaagatttgattaaataataaatactataaaattactaa 23570355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 130
Target Start/End: Original strand, 22922025 - 22922148
Alignment:
Q  7 gtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttcta 106  Q
    ||||| |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||    
T  22922025 gtgtgtctcttaggctgcataagttctgcatatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaagttcta 22922124  T
Q  107 gaaaattactaagatttgactaaa 130  Q
    |||||| |||||||||||||||||    
T  22922125 gaaaatcactaagatttgactaaa 22922148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 37189785 - 37189622
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    |||||||| |||||| ||||||||| |||||| |||||||  |||||||||||||||| || | ||||||||||||||||||  |||||||||| | |||    
T  37189785 aaaagtgtacctcttgggctacatatgttctgtttatatagcgaaagaaataacaaactcgggagccaaaataaaataaaacaaaataataatataaagt 37189686  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||| ||| ||||||||||||| ||||| |  |||||||||||||||||||| ||||| ||||||    
T  37189685 tctaaaaagttactaagatttggctaaa-ataaaatactactaaattactaagaaaactctcctg 37189622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 18468600 - 18468514
Alignment:
Q  38 atataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttg 124  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  18468600 atatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacgaaataataatagaaagttctagaaaattactaagatttg 18468514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 3 - 147
Target Start/End: Complemental strand, 42890316 - 42890182
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||          ||||||||||| |||    
T  42890316 aaaagtgtgcctcttaggctacataagttttgcttatgtagtgaaagaaataacaaacccgtgggccaaaataaa----------ataataatagaaagt 42890227  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaa 147  Q
    ||||||||||||||   ||||| |||||||||| |||||| ||||    
T  42890226 tctagaaaattacttccatttggctaaataatagatactaataaa 42890182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 22926822 - 22926890
Alignment:
Q  8 tgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataa 76  Q
    |||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22926822 tgtgtctcttaggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataa 22926890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 18180858 - 18181014
Alignment:
Q  9 gtgcctcttaggctacataa-gttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaac-----gtaataataatagagagt 102  Q
    |||||||||||||||||||| |||||| ||| ||||  |||||||||||||||  ||||||| ||||||||||||||     | ||||| |||||| | |    
T  18180858 gtgcctcttaggctacataatgttctgtttaaataacaaaagaaataacaaacatgtgggccgaaataaaataaaacaaaacgaaataagaatagaaatt 18180957  T
Q  103 tctagaaaattactaagatttgact-aaataataaatactactaaattactaataaaac 160  Q
    |||| ||||||| |||||||||| | ||||||  ||||||||||||||||||| |||||    
T  18180958 tctaaaaaattattaagatttgagttaaataa--aatactactaaattactaagaaaac 18181014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 24730866 - 24730826
Alignment:
Q  127 taaataataaatactactaaattactaataaaaccctcctg 167  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  24730866 taaatcataaatactactaaattactaataaaaccctcctg 24730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 22691232 - 22691062
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataa----caaacccgtgggccaaaataaaataaaacgtaataataata 96  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    |||||| ||||||  ||||||||||||||| ||||||||||    
T  22691232 ataaaagtgtgcctcttaggctacataagttctgcttatatagtgaaagaaataaataacaaaccagtgggctgaaataaaataaaacgaaataataata 22691133  T
Q  97 gagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
     | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  22691132 caaagttctagaaaattactaagatttggctaaataataaatactactaaattattaataaaaccctcctg 22691062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 24667608 - 24667436
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | |||||||||||| |    
T  24667608 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtggaccgaaataaaataaaatgaaataataatagaaa 24667509  T
Q  101 g------ttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |      | ||| |||||||||| |||||| ||||||||||| ||||||||||||| ||||||| ||||||||    
T  24667508 gatgaattactaaaaaattactacgatttggctaaataataactactactaaattaataataaagccctcctg 24667436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 6659507 - 6659651
Alignment:
Q  10 tgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaa 109  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||  | |||||| ||||||||||||||  |||||||||||| ||||||||||    
T  6659507 tgcctcttaggctacataagttctgcttatatagtgaaagaaataacaaattcatgggccgaaataaaataaaacaaaataataatagaaagttctagaa 6659606  T
Q  110 aattactaagatttgactaaataataaatactactaaattactaa 154  Q
    ||||||||||||||| ||||||||||||||||   ||||||||||    
T  6659607 aattactaagatttggctaaataataaatactgtaaaattactaa 6659651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 22716579 - 22716424
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    ||||||||||||||||||| |||||||||||||| |||| |||   ||||||||||||| ||||||||  ||||||||||||| | |||||||||||| |    
T  22716579 ataaaagtgtgcctcttag-ctacataagttctggttatgtaa---aagaaataacaaatccgtgggctgaaataaaataaaaagaaataataatagaaa 22716484  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaac 160  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  22716483 gttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaac 22716424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 22988638 - 22988793
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    ||||||||||||||||||| |||||||||||||| |||| |||   ||||||||||||| | ||||||  ||||||||||||| | |||||||||||| |    
T  22988638 ataaaagtgtgcctcttag-ctacataagttctggttatgtaa---aagaaataacaaatctgtgggctgaaataaaataaaaagaaataataatagaaa 22988733  T
Q  101 gttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaac 160  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  22988734 gttctagaaaattattaagatttggctaaataataaatactattaaattactaataaaac 22988793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 19935358 - 19935271
Alignment:
Q  71 aaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaa 159  Q
    |||||||| |||||| |||||||||||| ||||||  ||||| | ||||||||||||||| |  |||||||||||||||||||| ||||    
T  19935358 aaataaaacaaaacgaaataataatagaaagttctgaaaaatgattaagatttgactaaa-ataaaatactactaaattactaagaaaa 19935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 13085271 - 13085417
Alignment:
Q  13 ctcttaggctacataa-gttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaa 111  Q
    |||||||||| ||||| |||||| ||| |||   ||| ||||||||||   ||| ||| |||||||| |||||| |||||||||||| |||||||||| |    
T  13085271 ctcttaggctgcataatgttctgtttaaatagcaaaataaataacaaatttgtgagccgaaataaaacaaaacgaaataataatagaaagttctagaata 13085370  T
Q  112 ttactaagatttgactaaataataaatactactaaattactaataaaa 159  Q
    |||||||||| || ||||| |  ||||||||  |||||||||| ||||    
T  13085371 ttactaagatgtggctaaa-ataaaatactataaaattactaaaaaaa 13085417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 40778957 - 40779108
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||||| |||    
T  40778957 aaaagtgtgcctcttagactacataagttctgcttatatagtgaaagaaataataaacacgtgggccgaaataaaataaaacgaaataataatagaaagt 40779056  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaa 154  Q
    |||||||||||||||||||||| ||||||||||||||||   ||||||||||    
T  40779057 tctagaaaattactaagatttggctaaataataaatactgtaaaattactaa 40779108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 164
Target Start/End: Original strand, 21849142 - 21849302
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    |||||||| ||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||| |||||| |||    
T  21849142 aaaagtgtacct-ttaggctacataagtttcgcttatatagtgaaagaaataacaaacccgtgggccgaaataaaataaaacaaaataaaaatagaaagt 21849240  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctc 164  Q
    ||||||||||||||||||||||  ||||||||||||||||  |||||||||| |||||||||    
T  21849241 tctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21849302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 21845128 - 21845221
Alignment:
Q  71 aaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctc 164  Q
    ||||||||||||||  ||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| |||||||||    
T  21845128 aaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21845221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 21857123 - 21857216
Alignment:
Q  71 aaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaaccctc 164  Q
    ||||||||||||||  ||||| |||||| |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| |||||||||    
T  21857123 aaataaaataaaacaaaataaaaatagaaagttctagaaaattactaagatttggttaaataataaatactataaaattactaagaaaaccctc 21857216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 19501178 - 19501282
Alignment:
Q  61 ccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattactaataaaac 160  Q
    ||||||||| |||||||| |||||  |||||||||||| |||| ||||||||||||||||||||  |||| |  ||||||||  ||||||||||  ||||    
T  19501178 ccgtgggccgaaataaaacaaaacaaaataataatagaaagttttagaaaattactaagatttgggtaaa-ataaaatactataaaattactaaagaaac 19501276  T
Q  161 cctcct 166  Q
    ||||||    
T  19501277 cctcct 19501282  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 19677301 - 19677409
Alignment:
Q  4 aaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccg--tgggccaaaataaaataaaacgtaataataatagagag 101  Q
    ||||||||||||||||| | ||||||||||| ||| ||| | ||||||||||| ||||||  |||||| ||| | || |||||| || || |||||| ||    
T  19677301 aaagtgtgcctcttaggatgcataagttctgtttaaatactaaaagaaataacgaacccgtatgggccgaaaaataacaaaacgaaacaa-aatagaaag 19677399  T
Q  102 ttctagaaaa 111  Q
    ||||||||||    
T  19677400 ttctagaaaa 19677409  T

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Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 3535956 - 3535827
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |    
T  3535956 ataaaagtgtgcctcttaggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaa 3535857  T
Q  101 gttctagaaaattactaagatttgactaaa 130  Q
    |||||||||||| | |||||||||||||||    
T  3535856 gttctagaaaatcattaagatttgactaaa 3535827  T

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Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 3542167 - 3542038
Alignment:
Q  1 ataaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagaga 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |    
T  3542167 ataaaagtgtgcctcttaggctgcataagttctgcttatatagtgaaagaaataacaaacccgtgggccaaaataaaacaaaacaaaataataatagaaa 3542068  T
Q  101 gttctagaaaattactaagatttgactaaa 130  Q
    |||||||||||| | |||||||||||||||    
T  3542067 gttctagaaaatcattaagatttgactaaa 3542038  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 30052121 - 30051972
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||| |||||| ||| |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||    
T  30052121 aaaagtgtgtctcttaagctgcataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagt 30052022  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaa 154  Q
    |||||||||| ||||| ||||| ||||  || ||||||||  ||||||||||    
T  30052021 tctagaaaatcactaaaatttggctaa--aaaaaatactataaaattactaa 30051972  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 30049834 - 30049685
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||| |||||| |||  ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||    
T  30049834 aaaagtgtgtctcttaagctgaataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagt 30049735  T
Q  103 tctagaaaattactaagatttgactaaataataaatactactaaattactaa 154  Q
    |||||||||| ||||| ||||| ||||  || ||||||||  ||||||||||    
T  30049734 tctagaaaatcactaaaatttggctaa--aaaaaatactataaaattactaa 30049685  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 29340988 - 29341125
Alignment:
Q  14 tcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaatt 113  Q
    ||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||| |||||               |||||||| |||| |||||||||    
T  29340988 tcttaggctgcataagttctgcttatatagtgattgaaataacaaacccgtgggccgaaata---------------ataatagaaagttttagaaaatt 29341072  T
Q  114 actaagatttgactaaataataaatactactaaattactaataaaaccctcct 166  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  29341073 actaagatttggctaaaaaataaatactactaaattactaataaaaccctcct 29341125  T

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Target: chr6; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 11194541 - 11194422
Alignment:
Q  46 aaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactacta 145  Q
    |||||||||| |||||||| |||| |||||||| |||||  ||||||| |||| ||||||||||||||||||||||||| ||||| |  |||||||||||    
T  11194541 aaagaaataataaacccgtaggccgaaataaaacaaaacaaaataatactagaaagttctagaaaattactaagatttggctaaa-ataaaatactacta 11194443  T
Q  146 aattactaataaaaccctcct 166  Q
    ||||||||| ||||| |||||    
T  11194442 aattactaagaaaactctcct 11194422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 18203319 - 18203253
Alignment:
Q  86 taataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaattact 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  18203319 taataataatagagagttctagaaaattactaagatttgactaaataataaatactataaaattact 18203253  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 18727003 - 18726888
Alignment:
Q  50 aaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactactaaatt 149  Q
    |||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||| ||||||||||| ||||| |  ||| ||||  |||||    
T  18727003 aaataacaaacccgtgggccgaaataaaa-aaaacgaaataataatagaaagttctagaaaatgactaagatttggctaaa-ataaaaaactataaaatt 18726906  T
Q  150 actaataaaaccctcctg 167  Q
    ||||| ||||||||||||    
T  18726905 actaaaaaaaccctcctg 18726888  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 11190375 - 11190259
Alignment:
Q  46 aaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaaattactaagatttgactaaataataaatactacta 145  Q
    ||||||||||||||| ||| | || |||||||| |||||   ||||||||||| ||||||||||||||||| || |||||||||| |  |||||||| ||    
T  11190375 aaagaaataacaaactcgtagaccgaaataaaacaaaacaatataataatagaaagttctagaaaattacttaggtttgactaaa-ataaaatactatta 11190277  T
Q  146 aattactaataaaaccct 163  Q
    ||||| ||| ||||||||    
T  11190276 aattattaagaaaaccct 11190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 3565651 - 3565596
Alignment:
Q  9 gtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgt 64  Q
    ||||||||| |||||||||||||||| ||| ||| | || ||||||||||||||||    
T  3565651 gtgcctctttggctacataagttctgtttaaatactaaatgaaataacaaacccgt 3565596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 27822370 - 27822417
Alignment:
Q  120 atttgactaaataataaatactactaaattactaataaaaccctcctg 167  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||||    
T  27822370 atttgactaaaataaaaatactattaaattactaataaaaccctcctg 27822417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 2939862 - 2939919
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacc 61  Q
    |||||||| ||||||||||| ||||||||||||||| ||| | |||||||||| |||||    
T  2939862 aaaagtgt-cctcttaggctgcataagttctgcttaaatactaaaagaaataataaacc 2939919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 19232243 - 19232133
Alignment:
Q  4 aaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgt--gggccaaaataaaataaaacgtaataataatagagag 101  Q
    |||||||| ||| |||||| |||||||||| |||| ||| | |||||||| ||||||||||  ||||||||| | ||||||| | || || |||||| ||    
T  19232243 aaagtgtgtctcgtaggctgcataagttct-cttaaatactaaaagaaattacaaacccgtatgggccaaaa-ataataaaatgaaacaa-aatagaaag 19232147  T
Q  102 ttctagaaaattac 115  Q
    ||||||||||||||    
T  19232146 ttctagaaaattac 19232133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 8050125 - 8050161
Alignment:
Q  128 aaataataaatactactaaattactaataaaaccctc 164  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  8050125 aaataataaatactactaaattactaagaaaaacctc 8050161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 26571039 - 26570975
Alignment:
Q  46 aaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagttctagaaa 110  Q
    ||||||||||||||| |||||||| |||||||| |||||| || ||||  | | |||||||||||    
T  26571039 aaagaaataacaaactcgtgggccgaaataaaacaaaacgaaaaaatatgataaagttctagaaa 26570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 46875 - 47002
Alignment:
Q  3 aaaagtgtgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataatagagagt 102  Q
    ||||||||| |||||| |||  ||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |||||  |||||||||||| |||    
T  46875 aaaagtgtgtctcttaagctggataagttttgcttatatagtgaaagaaataacaaacccgtaggccaaaataaaacaaaacaaaataataatagaaagt 46974  T
Q  103 tctagaaaattactaagatttgactaaa 130  Q
    |||||||||| ||||| |||||||||||    
T  46975 tctagaaaatcactaaaatttgactaaa 47002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 45440 - 45526
Alignment:
Q  10 tgcctcttaggctacataagttctgcttatataatgaaagaaataacaaacccgtgggccaaaataaaataaaacgtaataataata 96  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||| |||||| |||||||||||||||||||||  ||||||||||    
T  45440 tgcctcttaggctgcataagttctccttatatagtgaaagaaataataaacccctgggccaaaataaaataaaacaaaataataata 45526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 45870 - 45914
Alignment:
Q  86 taataataatagagagttctagaaaattactaagatttgactaaa 130  Q
    ||||||||||||| ||||||||||||| ||||| ||||| |||||    
T  45870 taataataatagaaagttctagaaaatcactaaaatttggctaaa 45914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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