View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15183_low_14 (Length: 349)
Name: NF15183_low_14
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15183_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 65 - 333
Target Start/End: Complemental strand, 10874173 - 10873905
Alignment:
| Q |
65 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874173 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10874074 |
T |
|
| Q |
165 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10874073 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10873974 |
T |
|
| Q |
265 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873973 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
10873905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 65 - 333
Target Start/End: Complemental strand, 10879244 - 10878976
Alignment:
| Q |
65 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10879244 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10879145 |
T |
|
| Q |
165 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879144 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10879045 |
T |
|
| Q |
265 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10879044 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
10878976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 65 - 333
Target Start/End: Complemental strand, 10884315 - 10884047
Alignment:
| Q |
65 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10884315 |
aaatcagagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgt |
10884216 |
T |
|
| Q |
165 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10884215 |
tgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctct |
10884116 |
T |
|
| Q |
265 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10884115 |
gagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
10884047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 72 - 333
Target Start/End: Original strand, 10866139 - 10866400
Alignment:
| Q |
72 |
agaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgttgttttc |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10866139 |
agaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatactgtacttaacaaatgttgttttc |
10866238 |
T |
|
| Q |
172 |
tttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866239 |
tttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcctcacaatctctgagattc |
10866338 |
T |
|
| Q |
272 |
tcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10866339 |
tcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
10866400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 333
Target Start/End: Complemental strand, 10888252 - 10887974
Alignment:
| Q |
70 |
agagaaatgggcgttcagcagaaaataagcaaaaatgagaagaagaaccaaaagaagcaggaggattcacagtcaatac---------------tgtact |
154 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||| || |||| | |
|
|
| T |
10888252 |
agagagatggacgttcagcagaaaataagcaaaaatgagaagaagaaccaaaggcagcagcaggattcacagtcacaacaaccttcttcttcactgtatt |
10888153 |
T |
|
| Q |
155 |
taacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacgtcct |
254 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10888152 |
taacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctccacatcct |
10888053 |
T |
|
| Q |
255 |
cacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
|||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
|
|
| T |
10888052 |
cacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactgccttc |
10887974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 39675791 - 39675973
Alignment:
| Q |
151 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg |
250 |
Q |
| |
|
||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
39675791 |
tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg |
39675890 |
T |
|
| Q |
251 |
tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||||||| |||| | || ||||||||| ||||||| ||| |||||||| |
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|
| T |
39675891 |
tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttc |
39675973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 151 - 333
Target Start/End: Original strand, 10045784 - 10045966
Alignment:
| Q |
151 |
tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg |
250 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||||||||||||| || |||||||| ||||||||||||| |||||||||||||| |||||||| || | |
|
|
| T |
10045784 |
tacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacacctcttcatg |
10045883 |
T |
|
| Q |
251 |
tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttc |
333 |
Q |
| |
|
| |||||||||||||||||| || | ||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||| |
|
|
| T |
10045884 |
ttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttc |
10045966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 10874227 - 10874194
Alignment:
| Q |
11 |
catcatcaatcatcccctaaactgaactgaactc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10874227 |
catcatcaatcatcccctaaactgaactgaactc |
10874194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 10879298 - 10879265
Alignment:
| Q |
11 |
catcatcaatcatcccctaaactgaactgaactc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10879298 |
catcatcaatcatcccctaaactgaactgaactc |
10879265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 10884369 - 10884336
Alignment:
| Q |
11 |
catcatcaatcatcccctaaactgaactgaactc |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10884369 |
catcatcaatcatcccctaaactgaactgaactc |
10884336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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