View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15183_low_18 (Length: 278)

Name: NF15183_low_18
Description: NF15183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15183_low_18
NF15183_low_18
[»] chr4 (1 HSPs)
chr4 (1-278)||(24228804-24229086)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 24228804 - 24229086
Alignment:
Q  1 aaactgtaccatgattcctagttaatatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttgaagtcaatgtaca----ta 96  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    ||    
T  24228804 aaactgtaccatgattcctagtta-tatagtttagccgtccaaagcattgaatttgaagctgacttggtagttatagtttggagtcaatgtacatacata 24228902  T
Q  97 catgcaaatggaaacaaagaatagtacatatggtttgaagcaagctggtagatgaacacaactcagttttaccaacctgttacaggacacaacaaagtag 196  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  24228903 catgcaaatggaaacaaagaatagtacatatggtttgaagctagctggtagattaacacaactcagttgtaccaacctgttacatgacacaacaaagtag 24229002  T
Q  197 ccatgaatgttttccacgtggaaccactaccattaagcgatctagctgttggagctac--tagtcatacaaagttgacgcagct 278  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||||||||| ||||||    
T  24229003 ccatgaatgttttccacgtggaaccactaccattaagctatctagctggaggagctactatagtcatacaaagttgatgcagct 24229086  T

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